Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33711 Davidia involucrata HOM05D000001 ORTHO05D010262 4.5e-58 227.6 109 100.0
Actinidia06065 Actinidia chinensis HOM05D000001 ORTHO05D010262 1.2e-31 139.8 126 55.6
Cfa007502 Carpinus fangiana HOM05D000001 ORTHO05D010262 1.4e-30 136.3 122 57.4
QL02p080111 Quercus lobata HOM05D000001 ORTHO05D010262 8.8e-30 133.7 126 57.1
CiPaw.03G030800 Carya illinoinensis HOM05D000001 ORTHO05D010262 1.2e-29 133.3 126 54.8
QL02p080219 Quercus lobata HOM05D000001 ORTHO05D010262 3.4e-29 131.7 126 56.3
Haze_14591 Corylus avellana HOM05D000001 ORTHO05D010262 8.3e-28 127.1 111 58.6
TWI34G0847 Tripterygium wilfordii HOM05D000001 ORTHO05D010262 1.2e-26 123.2 130 49.2
Prupe.3G272900 Prunus persica HOM05D000001 ORTHO05D010262 2.7e-26 122.1 130 53.1
Aqoxy3G00806 Aquilegia oxysepala HOM05D000001 ORTHO05D010262 1.3e-25 119.8 123 48.0
GSVIVG01032594001 Vitis vinifera HOM05D001961 ORTHO05D010262 1.1e-24 116.7 118 51.7
RcHm_v2.0_Chr2g0169281 Rosa chinensis HOM05D000001 ORTHO05D010262 9.5e-24 113.6 119 49.6
CAN.G206.105 Capsicum annuum HOM05D000001 ORTHO05D010262 1.6e-23 112.8 123 47.2
MBI04_g20671_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010262 1.6e-23 112.8 121 51.2
Sopen02g032360 Solanum pennellii HOM05D000001 ORTHO05D010262 1.0e-22 110.2 126 45.2
Solyc02g087610.1 Solanum lycopersicum HOM05D000001 ORTHO05D010262 1.4e-22 109.8 124 46.0
Cc07_g02900 Coffea canephora HOM05D000001 ORTHO05D010262 4.0e-22 108.2 122 47.5
Nn5g27109 Nelumbo nucifera HOM05D000001 ORTHO05D010262 4.0e-22 108.2 124 47.6
PSO478G2588 Papaver somniferum HOM05D000001 ORTHO05D010262 1.7e-20 102.8 125 44.0
Cpa.g.sc14.51 Carica papaya HOM05D000001 ORTHO05D010262 2.8e-20 102.1 129 46.5
FvH4_6g49400 Fragaria vesca HOM05D000001 ORTHO05D010262 6.3e-20 100.9 117 47.9
FAN14G1110 Fragaria x ananassa HOM05D000001 ORTHO05D010262 4.1e-19 98.2 117 47.0
PSO161G0066 Papaver somniferum HOM05D000001 ORTHO05D010262 4.1e-19 98.2 125 43.2
FAN01G0460 Fragaria x ananassa HOM05D000001 ORTHO05D010262 1.2e-18 96.7 117 47.0
RcHm_v2.0_Chr1g0349531 Rosa chinensis HOM05D000001 ORTHO05D010262 1.2e-18 96.7 110 48.2
CANSAT64G1466 Cannabis sativa HOM05D000001 ORTHO05D010262 1.6e-18 96.3 119 47.9
Sc10g0003880 Simmondsia chinensis HOM05D000001 ORTHO05D010262 1.6e-18 96.3 119 43.7
Nitab4.5_0002265g0220 Nicotiana tabacum HOM05D000001 ORTHO05D010262 1.7e-17 92.8 111 47.7
PGSC0003DMG402001308 Solanum tuberosum HOM05D000001 ORTHO05D010262 1.1e-16 90.1 109 45.9
FAN03G3023 Fragaria x ananassa HOM05D000001 ORTHO05D010262 2.3e-14 82.4 110 43.6
FAN03G2959 Fragaria x ananassa HOM05D000001 ORTHO05D010262 1.5e-13 79.7 115 42.6
FAN02G2942 Fragaria x ananassa HOM05D000001 ORTHO05D010262 4.4e-13 78.2 54 68.5
RhsimUnG0054300 Rhododendron simsii HOM05D000001 ORTHO05D010262 1.7e-12 76.3 103 40.8
Rhsim10G0031500 Rhododendron simsii HOM05D000001 ORTHO05D010262 2.9e-12 75.5 103 40.8
HPP92_023557 Vanilla planifolia HOM05D000001 ORTHO05D010262 4.9e-12 74.7 116 41.4
A06p40420 Brassica napus HOM05D000001 ORTHO05D010262 1.1e-11 73.6 122 33.6
BraA06t26960Z Brassica rapa HOM05D000001 ORTHO05D010262 1.1e-11 73.6 122 33.6
Aa31LG2G4540 Aethionema arabicum HOM05D000001 ORTHO05D010262 4.1e-11 71.6 122 36.9
Nn7g36149 Nelumbo nucifera HOM05D000001 ORTHO05D000003 4.1e-11 71.6 126 34.9
TAR633G2774 Trochodendron aralioides HOM05D000001 ORTHO05D000003 4.1e-11 71.6 124 35.5
Thhalv10005682m.g Eutrema salsugineum HOM05D000001 ORTHO05D010262 1.6e-10 69.7 123 36.6
ATR0618G430 Amborella trichopoda HOM05D000001 ORTHO05D006025 2.0e-10 69.3 114 36.8
BcaC06g33631 Brassica carinata HOM05D000001 ORTHO05D010262 2.0e-10 69.3 123 35.0
C07p37620 Brassica napus HOM05D006735 ORTHO05D010262 2.0e-10 69.3 123 35.0
BolC7t44278H Brassica oleracea HOM05D000001 ORTHO05D010262 2.0e-10 69.3 123 35.0
Carub.0005s0718 Capsella rubella HOM05D000001 ORTHO05D010262 3.5e-10 68.6 121 36.4
Atru.chr7.1190 Acer truncatum HOM05D000001 ORTHO05D000003 7.8e-10 67.4 108 38.9
CARHR286660 Cardamine hirsuta HOM05D000001 ORTHO05D010262 7.8e-10 67.4 120 35.0
SHI25623 Sapria himalayana HOM05D000001 ORTHO05D010262 1.0e-09 67.0 102 39.2
Duzib264G0315 Durio zibethinus HOM05D000001 ORTHO05D010262 1.3e-09 66.6 116 31.0
THA.LOC104823927 Tarenaya hassleriana HOM05D000001 ORTHO05D010262 1.7e-09 66.2 118 34.7
Sp2g17310 Schrenkiella parvula HOM05D000001 ORTHO05D010262 3.0e-09 65.5 124 36.3
TAR374G0024 Trochodendron aralioides HOM05D000001 ORTHO05D010262 3.0e-09 65.5 115 37.4
AT3G28640 Arabidopsis thaliana HOM05D000001 ORTHO05D010262 5.0e-09 64.7 118 34.7
Gohir.A09G020300 Gossypium hirsutum HOM05D000001 ORTHO05D010262 5.0e-09 64.7 118 32.2
AT3G28660 Arabidopsis thaliana HOM05D000001 ORTHO05D010262 6.6e-09 64.3 118 34.7
Cpa.g.sc75.59 Carica papaya HOM05D000001 ORTHO05D000003 6.6e-09 64.3 115 33.0
Gorai.006G023300 Gossypium raimondii HOM05D000001 ORTHO05D010262 1.1e-08 63.5 115 32.2
Aqoxy5G03393 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.5e-08 62.4 112 34.8
Hma1.2p1_0027F.1_g017140 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.5e-08 62.4 120 32.5
Solyc02g094125.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.5e-08 62.4 113 34.5
Thecc.04G073300 Theobroma cacao HOM05D000001 ORTHO05D010262 2.5e-08 62.4 119 32.8
VMungo1215G1551 Vigna mungo HOM05D000001 ORTHO05D000003 3.3e-08 62.0 111 35.1
CAN.G377.19 Capsicum annuum HOM05D000001 ORTHO05D000003 4.3e-08 61.6 108 33.3
Nitab4.5_0002050g0130 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.3e-08 61.6 108 38.9
Sopen02g038750 Solanum pennellii HOM05D000001 ORTHO05D000003 4.3e-08 61.6 113 34.5
PGSC0003DMG400020256 Solanum tuberosum HOM05D000001 ORTHO05D000003 4.3e-08 61.6 113 35.4
EL10Ac6g15360 Beta vulgaris HOM05D000001 ORTHO05D000003 5.6e-08 61.2 111 33.3
Ciclev10010823m.g Citrus clementina HOM05D000001 ORTHO05D000003 5.6e-08 61.2 114 30.7
Gohir.D07G038600 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.6e-08 61.2 108 31.5
Gorai.001G040600 Gossypium raimondii HOM05D000001 ORTHO05D000003 5.6e-08 61.2 108 31.5
Nn3g17385 Nelumbo nucifera HOM05D000001 ORTHO05D000003 5.6e-08 61.2 110 30.9
Peaxi162Scf00420g00057 Petunia axillaris HOM05D000001 ORTHO05D006025 5.6e-08 61.2 112 33.9
PGSC0003DMG400046433 Solanum tuberosum HOM05D000001 ORTHO05D000003 5.6e-08 61.2 107 33.6
PGSC0003DMG402018966 Solanum tuberosum HOM05D000001 ORTHO05D000003 5.6e-08 61.2 107 33.6
PSO782G2579 Papaver somniferum HOM05D000001 ORTHO05D000003 7.3e-08 60.8 126 30.2
Aqoxy1G00200 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 9.5e-08 60.5 127 31.5
CAN.G473.97 Capsicum annuum HOM05D000001 ORTHO05D000003 9.5e-08 60.5 106 37.7
Lsat_1_v5_gn_2_87181 Lactuca sativa HOM05D000001 ORTHO05D000003 9.5e-08 60.5 112 33.9
Thecc.09G122700 Theobroma cacao HOM05D000001 ORTHO05D000003 9.5e-08 60.5 112 31.2
HanXRQChr14g0438841 Helianthus annuus HOM05D000001 ORTHO05D000003 1.2e-07 60.1 123 30.9
COL.COLO4_27920 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.6e-07 59.7 115 30.4
Glyma.01G139700 Glycine max HOM05D000001 ORTHO05D000003 1.6e-07 59.7 120 33.3
Gohir.D09G019900 Gossypium hirsutum HOM05D000001 ORTHO05D010262 1.6e-07 59.7 115 32.2
Phvul.002G081200 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.6e-07 59.7 111 35.1
BcaC06g30903 Brassica carinata HOM05D000001 ORTHO05D010262 2.1e-07 59.3 120 31.7
Cfa009751 Carpinus fangiana HOM05D000001 ORTHO05D000003 2.1e-07 59.3 124 29.0
COL.COLO4_05756 Corchorus olitorius HOM05D000001 ORTHO05D000003 2.1e-07 59.3 108 32.4
Haze_23116 Corylus avellana HOM05D000001 ORTHO05D000003 2.1e-07 59.3 124 29.0
Duzib251G0047 Durio zibethinus HOM05D000001 ORTHO05D000003 2.1e-07 59.3 110 33.6
Nn3g16478 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.1e-07 59.3 108 33.3
PSO017G3070 Papaver somniferum HOM05D000001 ORTHO05D000003 2.1e-07 59.3 126 29.4
Ah.09g225780 Amaranthus hybridus HOM05D000001 ORTHO05D000003 2.8e-07 58.9 108 32.4
ATR1156G080 Amborella trichopoda HOM05D000001 ORTHO05D000003 2.8e-07 58.9 106 34.9
Haze_23113 Corylus avellana HOM05D000001 ORTHO05D000003 2.8e-07 58.9 124 29.0
AUR62017821 Chenopodium quinoa HOM05D000001 ORTHO05D009485 3.6e-07 58.5 112 32.1
ATR0618G447 Amborella trichopoda HOM05D000001 ORTHO05D012439 4.7e-07 58.2 114 31.6
Cc10_g10860 Coffea canephora HOM05D000001 ORTHO05D000003 4.7e-07 58.2 116 35.3
Nn8g39384 Nelumbo nucifera HOM05D000001 ORTHO05D000003 4.7e-07 58.2 112 33.0
Lj2g0022728 Lotus japonicus HOM05D000001 ORTHO05D000003 6.2e-07 57.8 111 34.2
Rhsim08G0043100 Rhododendron simsii HOM05D000001 ORTHO05D009485 6.2e-07 57.8 108 32.4
GSVIVG01025295001 Vitis vinifera HOM05D000001 ORTHO05D000003 6.2e-07 57.8 126 28.6
CSS0032876 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009485 8.0e-07 57.4 106 34.0
CSS0033469 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009485 8.0e-07 57.4 106 34.0
ClCG03G013360 Citrullus lanatus HOM05D000001 ORTHO05D000003 8.0e-07 57.4 124 29.0
ClCG09G022200 Citrullus lanatus HOM05D000001 ORTHO05D000003 8.0e-07 57.4 62 48.4
Cc06_g08820 Coffea canephora HOM05D000001 ORTHO05D000003 8.0e-07 57.4 108 34.3
DCAR_017834 Daucus carota HOM05D000001 ORTHO05D000003 8.0e-07 57.4 108 29.6
AUR62003510 Chenopodium quinoa HOM05D000001 ORTHO05D009485 1.1e-06 57.0 112 31.2
MD03G1178400 Malus domestica HOM05D000001 ORTHO05D000003 1.1e-06 57.0 127 29.9
CiPaw.14G120800 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.4e-06 56.6 124 28.2
Prupe.4G244500 Prunus persica HOM05D000001 ORTHO05D000003 1.4e-06 56.6 127 30.7
Carub.0001s0742 Capsella rubella HOM05D000001 ORTHO05D000003 1.8e-06 56.2 116 33.6
MELO3C015205.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.8e-06 56.2 124 28.2
MBI07_g31011_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.8e-06 56.2 108 32.4
MBI18_g28225_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.8e-06 56.2 109 30.3
QL02p071520 Quercus lobata HOM05D000001 ORTHO05D000003 1.8e-06 56.2 106 33.0
TAR622G0551 Trochodendron aralioides HOM05D000001 ORTHO05D009485 1.8e-06 56.2 108 32.4
Atru.chr3.2610 Acer truncatum HOM05D000001 ORTHO05D000003 2.3e-06 55.8 127 29.1
Atru.chr6.2564 Acer truncatum HOM05D000001 ORTHO05D000003 2.3e-06 55.8 128 28.9
MSTRG.24784 Avicennia marina HOM05D000001 ORTHO05D000003 2.3e-06 55.8 108 33.3
Hma1.2p1_0018F.1_g012940 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.3e-06 55.8 111 31.5
Lsat_1_v5_gn_7_42460 Lactuca sativa HOM05D000001 ORTHO05D000003 2.3e-06 55.8 109 30.3
Lalb_Chr12g0208151 Lupinus albus HOM05D000001 ORTHO05D000003 2.3e-06 55.8 120 32.5
Manes.15G160400 Manihot esculenta HOM05D000001 ORTHO05D006025 2.3e-06 55.8 109 30.3
Nn1g04945 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.3e-06 55.8 132 30.3
RcHm_v2.0_Chr2g0089161 Rosa chinensis HOM05D000001 ORTHO05D000003 2.3e-06 55.8 111 28.8
TAR623G1306 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.3e-06 55.8 116 34.5
CARHR007890 Cardamine hirsuta HOM05D000001 ORTHO05D000003 3.1e-06 55.5 112 33.9
Cfa018923 Carpinus fangiana HOM05D000001 ORTHO05D006025 3.1e-06 55.5 114 29.8
Lsat_1_v5_gn_8_48141 Lactuca sativa HOM05D000001 ORTHO05D000003 3.1e-06 55.5 113 33.6
Lj4g0010533 Lotus japonicus HOM05D000001 ORTHO05D000003 3.1e-06 55.5 109 33.9
Manes.01G029700 Manihot esculenta HOM05D000001 ORTHO05D000003 3.1e-06 55.5 116 29.3
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 3.1e-06 55.5 120 30.8
Nitab4.5_0011569g0010 Nicotiana tabacum HOM05D000001 ORTHO05D006025 3.1e-06 55.5 106 35.8
QL10p017329 Quercus lobata HOM05D000001 ORTHO05D006025 3.1e-06 55.5 114 29.8
THA.LOC104826538 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 3.1e-06 55.5 113 31.0
EL10Ac4g10291 Beta vulgaris HOM05D000001 ORTHO05D000003 4.0e-06 55.1 120 32.5
Ciclev10025166m.g Citrus clementina HOM05D000001 ORTHO05D000003 4.0e-06 55.1 112 34.8
MD15G1176200 Malus domestica HOM05D000001 ORTHO05D000003 4.0e-06 55.1 108 29.6
Solyc12g006575.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.0e-06 55.1 107 29.9
TAR636G1012 Trochodendron aralioides HOM05D000001 ORTHO05D000003 4.0e-06 55.1 111 30.6
Lj3g0004149 Lotus japonicus HOM05D000001 ORTHO05D000003 5.2e-06 54.7 120 31.7
Lalb_Chr10g0098631 Lupinus albus HOM05D000001 ORTHO05D000003 5.2e-06 54.7 111 31.5
Oeu058054.1 Olea europaea HOM05D000001 ORTHO05D000003 5.2e-06 54.7 109 33.0
Sc09g0000620 Simmondsia chinensis HOM05D000001 ORTHO05D000003 5.2e-06 54.7 121 30.6
Haze_07307 Corylus avellana HOM05D000001 ORTHO05D006025 6.8e-06 54.3 114 28.9
Migut.L01212 Erythranthe guttata HOM05D000001 ORTHO05D000003 6.8e-06 54.3 111 29.7
MBI19_g03251_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 6.8e-06 54.3 113 30.1
Sed0003087 Sechium edule HOM05D000001 ORTHO05D000003 6.8e-06 54.3 120 25.8
TAR375G0611 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.8e-06 54.3 106 31.1
TAR383G0416 Trochodendron aralioides HOM05D000001 ORTHO05D010830 6.8e-06 54.3 118 29.7
CsaV3_1G042690 Cucumis sativus L. HOM05D000001 ORTHO05D000003 8.9e-06 53.9 124 28.2
Dinv42713 Davidia involucrata HOM05D000001 ORTHO05D010830 8.9e-06 53.9 117 31.6
Dinv43388 Davidia involucrata HOM05D000001 ORTHO05D010830 8.9e-06 53.9 117 31.6
Duzib168G1974 Durio zibethinus HOM05D000001 ORTHO05D000003 8.9e-06 53.9 108 31.5
Migut.N00112 Erythranthe guttata HOM05D000001 ORTHO05D000003 8.9e-06 53.9 108 32.4
Prupe.6G302800 Prunus persica HOM05D000001 ORTHO05D000003 8.9e-06 53.9 113 34.5
vmacro04189 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 8.9e-06 53.9 110 31.8


User provided reference genes

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