Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 8.3e-69 263.5 123 100.0
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.6e-11 73.2 46 78.3
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 2.7e-11 72.4 47 80.9
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 4.7e-11 71.6 45 80.0
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 3.0e-10 68.9 46 73.9
Dinv35020 Davidia involucrata HOM05D005035 ORTHO05D006141 3.9e-10 68.6 113 45.1
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 3.9e-10 68.6 47 72.3
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 6.7e-10 67.8 46 73.9
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 8.8e-10 67.4 46 71.7
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 8.8e-10 67.4 45 73.3
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.1e-09 67.0 46 71.7
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.5e-09 66.6 47 72.3
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 1.5e-09 66.6 44 72.7
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 2.0e-09 66.2 44 70.5
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 2.6e-09 65.9 42 73.8
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 4.4e-09 65.1 46 69.6
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 4.4e-09 65.1 46 69.6
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 4.4e-09 65.1 44 70.5
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 5.7e-09 64.7 44 68.2
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 5.7e-09 64.7 46 65.2
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 7.4e-09 64.3 44 68.2
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.4e-09 64.3 46 69.6
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.4e-09 64.3 46 69.6
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 9.7e-09 63.9 62 59.7
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 9.7e-09 63.9 60 60.0
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.3e-08 63.5 47 66.0
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.7e-08 63.2 44 68.2
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.7e-08 63.2 44 68.2
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.7e-08 63.2 46 69.6
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.7e-08 63.2 44 68.2
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.7e-08 63.2 46 69.6
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 1.7e-08 63.2 46 65.2
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 1.7e-08 63.2 46 65.2
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.7e-08 63.2 45 68.9
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 2.2e-08 62.8 46 69.6
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 2.2e-08 62.8 41 73.2
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.2e-08 62.8 44 68.2
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.8e-08 62.4 44 70.5
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.8e-08 62.4 44 68.2
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.7e-08 62.0 36 80.6
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.7e-08 62.0 36 80.6
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 3.7e-08 62.0 36 80.6
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 3.7e-08 62.0 36 80.6
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 3.7e-08 62.0 57 56.1
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 4.8e-08 61.6 50 68.0
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 4.8e-08 61.6 58 58.6
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 4.8e-08 61.6 51 64.7
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 4.8e-08 61.6 41 73.2
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 6.3e-08 61.2 48 64.6
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 6.3e-08 61.2 51 64.7
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 8.2e-08 60.8 41 70.7
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 8.2e-08 60.8 46 65.2
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 8.2e-08 60.8 46 71.7
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 8.2e-08 60.8 46 65.2
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 8.2e-08 60.8 40 75.0
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 1.1e-07 60.5 43 72.1
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.1e-07 60.5 46 65.2
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-07 60.5 46 65.2
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-07 60.5 46 65.2
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-07 60.5 46 65.2
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-07 60.5 46 65.2
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.1e-07 60.5 46 67.4
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.4e-07 60.1 41 73.2
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.4e-07 60.1 41 73.2
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.4e-07 60.1 48 62.5
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 1.8e-07 59.7 46 65.2
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 1.8e-07 59.7 41 70.7
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.8e-07 59.7 46 63.0
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.8e-07 59.7 50 66.0
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.4e-07 59.3 41 70.7
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.4e-07 59.3 42 71.4
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 2.4e-07 59.3 46 65.2
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.1e-07 58.9 48 64.6
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.1e-07 58.9 48 64.6
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 3.1e-07 58.9 45 62.2
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.1e-07 58.9 53 62.3
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 4.1e-07 58.5 49 65.3
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 4.1e-07 58.5 49 65.3
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 4.1e-07 58.5 49 65.3
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 4.1e-07 58.5 59 54.2
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 5.3e-07 58.2 49 63.3
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 5.3e-07 58.2 46 65.2
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 5.3e-07 58.2 46 65.2
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 5.3e-07 58.2 46 67.4
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 5.3e-07 58.2 46 67.4
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 7.0e-07 57.8 46 60.9
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 9.1e-07 57.4 44 61.4
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 9.1e-07 57.4 42 71.4
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 9.1e-07 57.4 33 81.8
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 9.1e-07 57.4 43 65.1
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 9.1e-07 57.4 44 63.6
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 9.1e-07 57.4 44 68.2
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.2e-06 57.0 58 56.9
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 1.2e-06 57.0 46 63.0
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 1.2e-06 57.0 46 60.9
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.2e-06 57.0 45 64.4
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.2e-06 57.0 45 64.4
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 1.5e-06 56.6 48 58.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.5e-06 56.6 42 66.7
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.0e-06 56.2 47 59.6
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.6e-06 55.8 33 78.8
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 2.6e-06 55.8 49 65.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 2.6e-06 55.8 45 66.7
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.6e-06 55.8 33 75.8
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 2.6e-06 55.8 41 63.4
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 2.6e-06 55.8 41 65.9
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 2.6e-06 55.8 44 59.1
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.4e-06 55.5 62 53.2
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 3.4e-06 55.5 40 60.0
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 5.9e-06 54.7 32 81.2
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 5.9e-06 54.7 32 78.1


User provided reference genes

Program Settings