Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.4e-96 356.3 188 100.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 5.3e-75 284.6 175 88.0
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 9.2e-59 230.7 173 75.1
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.5e-56 223.4 186 68.3
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.0e-54 217.2 184 65.8
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 5.2e-54 214.9 172 69.2
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 4.4e-53 211.8 173 69.4
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.7e-52 209.9 180 66.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.7e-52 209.9 173 69.4
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.7e-52 209.9 173 68.2
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.7e-52 209.9 174 72.4
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 2.2e-52 209.5 184 67.4
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 4.9e-52 208.4 182 67.0
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 6.4e-52 208.0 172 66.3
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 9.2e-51 204.1 184 65.2
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.6e-50 203.4 173 67.1
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.7e-50 202.6 183 62.8
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 3.5e-50 202.2 184 62.0
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 7.8e-50 201.1 183 61.2
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.9e-49 198.7 173 67.6
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 6.6e-49 198.0 168 67.9
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 6.6e-49 198.0 170 68.8
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 8.6e-49 197.6 170 68.2
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 8.6e-49 197.6 179 64.8
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.5e-48 196.8 168 66.7
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 4.3e-48 195.3 173 66.5
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 4.3e-48 195.3 185 63.8
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 5.6e-48 194.9 178 61.8
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.1e-47 193.0 173 67.1
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.6e-47 192.2 182 62.6
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 6.2e-47 191.4 180 63.3
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 6.2e-47 191.4 173 65.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.4e-46 190.3 181 66.3
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 3.1e-46 189.1 180 61.1
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 4.0e-46 188.7 173 63.0
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.5e-45 186.8 172 64.5
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.5e-45 186.8 185 61.1
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 2.6e-45 186.0 184 60.9
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.6e-45 186.0 174 63.8
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.4e-45 185.7 180 61.7
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.3e-44 183.7 181 61.3
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.9e-44 182.6 174 64.4
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 4.9e-44 181.8 169 60.9
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.1e-43 180.6 184 59.2
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.4e-43 180.3 175 59.4
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 2.4e-43 179.5 173 57.8
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 3.2e-43 179.1 180 61.1
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 3.2e-43 179.1 172 60.5
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.2e-43 179.1 172 59.3
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 4.1e-43 178.7 179 60.9
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.1e-43 178.7 172 59.9
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 4.1e-43 178.7 171 59.6
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.8e-42 174.5 172 58.1
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.0e-41 174.1 174 61.5
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.0e-41 174.1 173 57.2
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 2.3e-41 172.9 177 58.8
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.0e-41 171.8 174 60.9
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.1e-40 170.6 174 60.9
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.5e-40 170.2 184 56.0
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.3e-40 168.7 181 56.4
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 7.3e-40 167.9 180 58.9
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.5e-40 167.5 181 55.8
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.6e-39 166.8 171 60.2
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 2.1e-39 166.4 169 59.8
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.1e-39 166.4 174 60.3
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.6e-39 165.6 181 55.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 4.7e-39 165.2 180 56.1
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 4.7e-39 165.2 172 57.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.8e-38 163.3 172 57.6
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 2.3e-38 162.9 169 59.8
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 3.1e-38 162.5 177 56.5
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 5.2e-38 161.8 169 60.9
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 8.9e-38 161.0 181 55.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 8.9e-38 161.0 170 57.1
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.0e-37 159.8 172 57.0
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.3e-36 157.1 187 55.6
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.9e-36 156.0 127 66.9
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 3.7e-36 155.6 125 70.4
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 4.9e-36 155.2 172 58.1
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 6.4e-36 154.8 151 65.6
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 6.4e-36 154.8 190 55.8
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.4e-35 153.7 171 59.6
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.9e-35 153.3 171 57.3
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.2e-35 152.5 171 59.6
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 4.1e-35 152.1 184 52.7
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 7.1e-35 151.4 186 54.3
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 7.1e-35 151.4 171 57.3
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 9.2e-35 151.0 187 53.5
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 4.6e-34 148.7 184 52.7
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 7.8e-34 147.9 175 57.1
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.3e-33 146.4 175 56.0
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.0e-33 146.0 175 57.7
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 6.6e-33 144.8 177 56.5
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 6.6e-33 144.8 174 56.3
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.2e-31 140.6 186 55.4
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.1e-31 139.8 127 61.4
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 2.1e-31 139.8 178 54.5
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 6.2e-31 138.3 166 52.4
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.1e-30 137.5 177 51.4
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.1e-30 137.5 177 51.4
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.8e-30 136.7 180 49.4
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 2.4e-30 136.3 173 53.2
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 5.2e-30 135.2 175 52.6
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 5.2e-30 135.2 175 52.6
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 6.8e-30 134.8 180 53.9
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 8.9e-30 134.4 180 53.3
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 8.9e-30 134.4 180 53.3
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 8.9e-30 134.4 180 53.3
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.2e-29 134.0 175 52.0
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 9.9e-29 131.0 127 63.0
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 9.9e-29 131.0 189 49.7
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.3e-28 130.6 169 55.0
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.9e-28 129.4 180 52.8
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.1e-26 123.2 179 49.2
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 3.5e-26 122.5 179 50.8
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 3.5e-26 122.5 179 50.8
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 3.5e-26 122.5 179 50.8
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.3e-25 120.6 185 42.7
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.7e-25 120.2 182 49.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 5.1e-25 118.6 171 52.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 7.3e-24 114.8 180 47.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 6.2e-23 111.7 172 46.5
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 4.0e-22 109.0 175 49.7
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 9.0e-22 107.8 176 48.9
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.5e-21 107.1 174 48.3
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 7.6e-21 104.8 181 47.0
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 7.6e-21 104.8 181 47.0
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 8.4e-20 101.3 136 53.7
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 4.2e-19 99.0 175 47.4
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 5.4e-19 98.6 188 44.1
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.6e-18 97.1 173 43.4
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 7.8e-18 94.7 136 44.9
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 7.8e-18 94.7 126 50.8
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.1e-16 90.9 127 47.2
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 2.8e-15 86.3 127 44.9
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 3.1e-14 82.8 174 40.8
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 9.9e-13 77.8 173 38.2
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 5.4e-11 72.0 119 50.4
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 8.1e-07 58.2 133 38.3


User provided reference genes

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