Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 3.3e-184 648.3 333 100.0
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 8.4e-156 553.9 334 86.2
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 1.9e-152 542.7 328 85.1
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 5.6e-152 541.2 334 84.4
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 8.4e-148 527.3 331 82.5
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 2.4e-147 525.8 335 82.1
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 2.4e-147 525.8 333 82.6
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 2.1e-146 522.7 327 84.1
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 2.1e-146 522.7 339 82.6
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 4.6e-146 521.5 337 82.2
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 2.3e-145 519.2 338 82.0
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 2.5e-144 515.8 334 81.7
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 6.2e-143 511.1 336 78.6
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 1.4e-142 510.0 332 77.7
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 2.4e-142 509.2 338 79.6
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 9.0e-142 507.3 298 85.9
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 1.2e-141 506.9 338 77.5
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 1.5e-141 506.5 310 84.5
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 3.4e-141 505.4 332 79.5
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 4.5e-141 505.0 327 79.8
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 5.8e-141 504.6 330 79.1
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.3e-140 503.4 326 79.1
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 3.8e-140 501.9 336 78.6
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 4.9e-140 501.5 324 79.9
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 4.9e-140 501.5 328 78.0
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 6.4e-140 501.1 308 83.1
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.4e-140 501.1 324 79.6
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 8.4e-140 500.7 344 77.6
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.9e-139 499.6 342 77.5
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.9e-139 499.6 340 77.9
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 4.2e-139 498.4 288 84.7
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 7.1e-139 497.7 328 77.4
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 7.1e-139 497.7 328 77.4
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 9.3e-139 497.3 323 78.6
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 1.2e-138 496.9 321 78.5
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 1.2e-138 496.9 336 77.1
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 1.6e-138 496.5 323 79.6
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 2.1e-138 496.1 343 77.6
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 4.6e-138 495.0 298 81.9
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 6.0e-138 494.6 297 84.5
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 1.0e-137 493.8 299 82.6
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.0e-137 493.8 292 83.6
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 1.0e-137 493.8 332 76.5
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 1.8e-137 493.0 332 76.8
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 1.8e-137 493.0 311 81.0
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 3.0e-137 492.3 292 83.2
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 3.0e-137 492.3 326 79.1
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 6.7e-137 491.1 299 81.9
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 8.7e-137 490.7 339 77.0
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.9e-136 489.6 320 77.5
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 2.5e-136 489.2 321 77.3
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.3e-136 488.4 344 75.6
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 9.6e-136 487.3 320 77.2
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.3e-135 486.9 340 75.0
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.3e-135 486.9 334 75.7
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 2.1e-135 486.1 319 77.4
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.1e-135 486.1 319 77.4
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.1e-135 486.1 338 76.3
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.7e-135 485.3 340 74.7
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 6.2e-135 484.6 319 77.1
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 6.2e-135 484.6 331 76.4
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 8.1e-135 484.2 313 78.3
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.1e-134 483.8 291 82.5
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 1.1e-134 483.8 291 82.5
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 2.4e-134 482.6 292 81.5
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 2.4e-134 482.6 292 82.2
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 3.1e-134 482.3 319 77.1
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 3.1e-134 482.3 319 77.1
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 4.0e-134 481.9 301 80.1
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 5.3e-134 481.5 339 73.5
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 5.3e-134 481.5 303 80.2
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 5.3e-134 481.5 326 75.5
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 6.9e-134 481.1 326 75.2
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 9.0e-134 480.7 330 73.6
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 9.0e-134 480.7 313 78.0
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 9.0e-134 480.7 341 74.5
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.2e-133 480.3 313 78.3
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 2.6e-133 479.2 291 81.4
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 3.4e-133 478.8 291 81.1
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 4.5e-133 478.4 289 82.4
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 5.8e-133 478.0 325 76.9
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 2.2e-132 476.1 327 74.3
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 8.4e-132 474.2 274 85.8
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 3.2e-131 472.2 269 85.5
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 5.6e-128 461.5 283 79.5
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.4e-126 456.8 343 72.3
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 6.9e-126 454.5 281 78.3
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 8.4e-124 447.6 326 71.2
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 7.1e-123 444.5 326 70.9
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 1.2e-122 443.7 289 76.5
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.7e-121 438.0 262 84.4
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 1.1e-120 437.2 286 74.5
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 1.1e-118 430.6 396 60.4
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.1e-112 410.6 334 67.7
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 9.1e-110 401.0 211 95.3
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.3e-108 397.1 260 79.2
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.8e-105 386.7 250 76.0
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 9.7e-104 380.9 237 80.2
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 7.0e-102 374.8 245 79.6
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.0e-101 373.2 244 80.7
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.0e-101 373.2 235 79.1
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 4.5e-101 372.1 235 77.4
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.1e-96 357.5 249 75.1
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 2.8e-95 352.8 268 64.2
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.8e-95 352.1 245 75.1
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 1.8e-94 350.1 262 63.4
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.7e-92 343.6 253 72.3
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 3.2e-91 339.3 202 78.7
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 3.6e-90 335.9 212 78.8
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.7e-85 319.7 309 59.9
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 1.0e-76 291.2 263 53.6
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 5.5e-75 285.4 159 86.2
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 6.8e-73 278.5 212 67.9
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 4.1e-62 242.7 210 61.0
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.8e-57 227.3 159 75.5
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 2.3e-52 210.3 317 42.6
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 1.9e-51 207.2 324 42.9
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 1.4e-49 201.1 120 80.0
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 6.8e-49 198.7 186 57.5
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 1.7e-47 194.1 118 82.2
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.9e-46 190.7 116 80.2
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.0e-44 184.9 128 71.9
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 1.3e-44 184.5 223 47.1
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 5.1e-36 156.0 329 36.5
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.6e-35 152.5 234 41.5
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.9e-33 145.6 74 94.6
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 3.0e-28 130.2 78 80.8
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 4.3e-27 126.3 76 80.3
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 2.1e-26 124.0 76 76.3
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 8.1e-26 122.1 285 30.2
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 1.8e-25 120.9 87 70.1
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 3.5e-21 106.7 346 24.6
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.1e-20 102.8 106 50.9
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 1.1e-14 85.1 81 58.0
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 1.4e-14 84.7 70 64.3
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 2.3e-12 77.4 173 34.7
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 5.7e-11 72.8 42 83.3
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 1.7e-07 61.2 46 63.0
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 2.9e-07 60.5 74 47.3
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 3.8e-07 60.1 59 55.9
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 5.0e-07 59.7 50 64.0


User provided reference genes

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