Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32660 Davidia involucrata HOM05D005494 ORTHO05D006689 8.5e-119 430.3 203 100.0
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 3.4e-19 99.4 64 75.0
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 1.8e-15 87.0 44 90.9
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 1.8e-15 87.0 44 90.9
Dinv24005 Davidia involucrata HOM05D000240 ORTHO05D027588 1.7e-13 80.5 46 82.6
Dinv23473 Davidia involucrata HOM05D000240 ORTHO05D001153 3.1e-12 76.3 54 72.2
Dinv30354 Davidia involucrata HOM05D003641 ORTHO05D027588 4.5e-11 72.4 38 89.5
Dinv13115 Davidia involucrata HOM05D005494 ORTHO05D006689 7.7e-11 71.6 97 46.4
Hma1.2p1_0572F.1_g181100 Hydrangea macrophylla HOM05D005494 ORTHO05D006689 1.3e-10 70.9 85 48.2
CSS0010415 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 2.9e-10 69.7 33 87.9
CSS0047784 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 2.9e-10 69.7 33 87.9
Dinv07986 Davidia involucrata HOM05D005494 ORTHO05D006689 2.9e-10 69.7 33 87.9
Actinidia04945 Actinidia chinensis HOM05D005494 ORTHO05D006689 3.8e-10 69.3 33 84.8
Rhsim08G0163400 Rhododendron simsii HOM05D005494 ORTHO05D006689 5.0e-10 68.9 34 88.2
Cc04_g16070 Coffea canephora HOM05D005494 ORTHO05D006689 6.5e-10 68.6 43 74.4
Hma1.2p1_0066F.1_g035890 Hydrangea macrophylla HOM05D000240 ORTHO05D001153 8.5e-10 68.2 53 66.0
Lsat_1_v5_gn_5_17360 Lactuca sativa HOM05D005494 ORTHO05D006689 8.5e-10 68.2 50 62.0
Lj5C118G23 Lonicera japonica HOM05D005494 ORTHO05D006689 1.4e-09 67.4 33 84.8
Lj9C381G11 Lonicera japonica HOM05D000240 ORTHO05D001153 1.9e-09 67.0 54 64.8
vmacro19338 Vaccinium macrocarpon HOM05D005494 ORTHO05D006689 1.9e-09 67.0 33 87.9
Dinv42014 Davidia involucrata HOM05D000240 ORTHO05D001153 2.5e-09 66.6 54 64.8
Lj5C191G7 Lonicera japonica HOM05D000240 ORTHO05D001153 3.2e-09 66.2 54 63.0
Oeu039559.2 Olea europaea HOM05D005494 ORTHO05D006689 3.2e-09 66.2 34 82.4
Solyc03g113610.4 Solanum lycopersicum HOM05D005494 ORTHO05D006689 5.5e-09 65.5 74 50.0
Sopen03g032650 Solanum pennellii HOM05D005494 ORTHO05D006689 5.5e-09 65.5 74 50.0
MSTRG.9655 Avicennia marina HOM05D005494 ORTHO05D006689 7.2e-09 65.1 33 84.8
Dinv22120 Davidia involucrata HOM05D000240 ORTHO05D183166 7.2e-09 65.1 82 48.8
Migut.D01889 Erythranthe guttata HOM05D005494 ORTHO05D006689 7.2e-09 65.1 33 84.8
Migut.N01938 Erythranthe guttata HOM05D005494 ORTHO05D006689 7.2e-09 65.1 33 84.8
Peaxi162Scf00017g02118 Petunia axillaris HOM05D005494 ORTHO05D006689 1.2e-08 64.3 92 38.0
PGSC0003DMG400024571 Solanum tuberosum HOM05D005494 ORTHO05D006689 1.2e-08 64.3 74 48.6
SGA_v2.0_scaffold7G04099 Striga asiatica HOM05D005494 ORTHO05D006689 1.2e-08 64.3 93 41.9
CANSAT80G2452 Cannabis sativa HOM05D005494 ORTHO05D006689 1.6e-08 63.9 95 43.2
CAN.G999.3 Capsicum annuum HOM05D005494 ORTHO05D006689 1.6e-08 63.9 77 46.8
EL10Ac5g10874 Beta vulgaris HOM05D005494 ORTHO05D006689 2.1e-08 63.5 34 73.5
QL10p014050 Quercus lobata HOM05D005494 ORTHO05D006689 2.1e-08 63.5 93 41.9
Dinv09117 Davidia involucrata HOM05D000240 ORTHO05D000032 2.7e-08 63.2 57 61.4
Dinv24687 Davidia involucrata HOM05D000240 ORTHO05D185531 2.7e-08 63.2 54 61.1
Nitab4.5_0000642g0180 Nicotiana tabacum HOM05D005494 ORTHO05D006689 2.7e-08 63.2 92 38.0
RcHm_v2.0_Chr7g0180051 Rosa chinensis HOM05D005494 ORTHO05D006689 2.7e-08 63.2 99 35.4
AUR62022932 Chenopodium quinoa HOM05D005494 ORTHO05D006689 3.6e-08 62.8 33 75.8
Nitab4.5_0009486g0030 Nicotiana tabacum HOM05D005494 ORTHO05D006689 3.6e-08 62.8 32 84.4
Oeu038310.1 Olea europaea HOM05D005494 ORTHO05D006689 3.6e-08 62.8 33 81.8
TAR629G2056 Trochodendron aralioides HOM05D005494 ORTHO05D006689 3.6e-08 62.8 93 37.6
GSVIVG01008098001 Vitis vinifera HOM05D005494 ORTHO05D006689 3.6e-08 62.8 33 78.8
GSVIVG01008101001 Vitis vinifera HOM05D005494 ORTHO05D006689 3.6e-08 62.8 33 78.8
Haze_07413 Corylus avellana HOM05D005494 ORTHO05D006689 4.7e-08 62.4 95 40.0
Eucgr.B00382 Eucalyptus grandis HOM05D005494 ORTHO05D006689 4.7e-08 62.4 33 78.8
Manes.11G088000 Manihot esculenta HOM05D000240 ORTHO05D001153 4.7e-08 62.4 55 61.8
TAR622G0530 Trochodendron aralioides HOM05D005494 ORTHO05D006689 4.7e-08 62.4 87 37.9
Cc02_g17060 Coffea canephora HOM05D000240 ORTHO05D001153 6.1e-08 62.0 54 59.3
Nitab4.5_0011132g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 6.1e-08 62.0 54 55.6
MD14G1189700 Malus domestica HOM05D005494 ORTHO05D006689 7.9e-08 61.6 34 76.5
Nn3g17064 Nelumbo nucifera HOM05D005494 ORTHO05D006689 7.9e-08 61.6 33 75.8
Nitab4.5_0002723g0070 Nicotiana tabacum HOM05D000240 ORTHO05D001153 7.9e-08 61.6 54 55.6
AUR62012293 Chenopodium quinoa HOM05D005494 ORTHO05D006689 1.0e-07 61.2 33 72.7
ECA247G2071 Erigeron canadensis HOM05D005494 ORTHO05D006689 1.0e-07 61.2 68 45.6
FvH4_5g16020 Fragaria vesca HOM05D005494 ORTHO05D006689 1.0e-07 61.2 34 76.5
FAN04G1682 Fragaria x ananassa HOM05D005494 ORTHO05D006689 1.0e-07 61.2 34 76.5
FAN18G0952 Fragaria x ananassa HOM05D005494 ORTHO05D006689 1.0e-07 61.2 34 76.5
Atru.chr3.1308 Acer truncatum HOM05D005494 ORTHO05D006689 1.4e-07 60.8 36 77.8
Nitab4.5_0000589g0030 Nicotiana tabacum HOM05D000240 ORTHO05D001153 1.4e-07 60.8 54 57.4
Nitab4.5_0003006g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 1.4e-07 60.8 54 57.4
Solyc10g054080.3 Solanum lycopersicum HOM05D000240 ORTHO05D001153 1.4e-07 60.8 54 59.3
Sopen10g023930 Solanum pennellii HOM05D000240 ORTHO05D001153 1.4e-07 60.8 54 59.3
TWI09G1329 Tripterygium wilfordii HOM05D005494 ORTHO05D006689 1.4e-07 60.8 87 40.2
DCAR_026093 Daucus carota HOM05D005494 ORTHO05D006689 1.8e-07 60.5 32 78.1
Dinv10477 Davidia involucrata HOM05D000240 ORTHO05D181147 1.8e-07 60.5 65 50.8
PSO591G0251 Papaver somniferum HOM05D005494 ORTHO05D006689 1.8e-07 60.5 33 72.7
PSO832G2211 Papaver somniferum HOM05D005494 ORTHO05D006689 1.8e-07 60.5 33 72.7
Hund09389 Selenicereus undatus HOM05D005494 ORTHO05D006689 1.8e-07 60.5 33 72.7
SGA_v2.0_scaffold114G31872 Striga asiatica HOM05D005494 ORTHO05D006689 1.8e-07 60.5 42 64.3
unitig_8.g3614 Utricularia gibba HOM05D005494 ORTHO05D006689 1.8e-07 60.5 35 71.4
Cfa019036 Carpinus fangiana HOM05D005494 ORTHO05D006689 2.3e-07 60.1 95 36.8
Nn6g32210 Nelumbo nucifera HOM05D000240 ORTHO05D001153 2.3e-07 60.1 61 52.5
Solyc01g110190.4 Solanum lycopersicum HOM05D000240 ORTHO05D001153 2.3e-07 60.1 54 55.6
Sopen01g052350 Solanum pennellii HOM05D000240 ORTHO05D001153 2.3e-07 60.1 54 55.6
MELO3C002226.2 Cucumis melo HOM05D005494 ORTHO05D006689 3.0e-07 59.7 33 75.8
Prupe.5G182300 Prunus persica HOM05D005494 ORTHO05D006689 3.0e-07 59.7 33 75.8
Aqoxy3G03184 Aquilegia oxysepala HOM05D005494 ORTHO05D006689 3.9e-07 59.3 33 72.7
AUR62008313 Chenopodium quinoa HOM05D005494 ORTHO05D006689 3.9e-07 59.3 32 75.0
AUR62021784 Chenopodium quinoa HOM05D005494 ORTHO05D006689 3.9e-07 59.3 32 75.0
Duzib084G0032 Durio zibethinus HOM05D005494 ORTHO05D006689 3.9e-07 59.3 33 78.8
FAN13G0712 Fragaria x ananassa HOM05D005494 ORTHO05D006689 3.9e-07 59.3 34 73.5
Hma1.2p1_0851F.1_g228305 Hydrangea macrophylla HOM05D000240 ORTHO05D001153 3.9e-07 59.3 54 55.6
Sed0009281 Sechium edule HOM05D005494 ORTHO05D006689 5.1e-07 58.9 33 78.8
arahy.Tifrunner.gnm1.ann1.QI1X69 Arachis hypogaea HOM05D005494 ORTHO05D006689 6.7e-07 58.5 49 55.1
arahy.Tifrunner.gnm1.ann1.Y2W2NU Arachis hypogaea HOM05D005494 ORTHO05D006689 6.7e-07 58.5 49 55.1
CAN.G1.58 Capsicum annuum HOM05D000240 ORTHO05D001153 6.7e-07 58.5 54 57.4
CiPaw.11G034500 Carya illinoinensis HOM05D005494 ORTHO05D006689 6.7e-07 58.5 32 78.1
Ciclev10020622m.g Citrus clementina HOM05D005494 ORTHO05D006689 6.7e-07 58.5 33 78.8
Actinidia27860 Actinidia chinensis HOM05D000240 ORTHO05D001153 8.8e-07 58.2 55 58.2
Potri.012G073500 Populus trichocarpa HOM05D005494 ORTHO05D006689 8.8e-07 58.2 33 75.8
QL11p045641 Quercus lobata HOM05D000240 ORTHO05D001153 8.8e-07 58.2 57 59.6
SEGI_00948 Sequoiadendron giganteum HOM05D005494 ORTHO05D006689 8.8e-07 58.2 33 72.7
Solyc11g044880.3 Solanum lycopersicum HOM05D000240 ORTHO05D001153 8.8e-07 58.2 97 37.1
Sopen11g020380 Solanum pennellii HOM05D000240 ORTHO05D001153 8.8e-07 58.2 97 37.1
ClCG01G014230 Citrullus lanatus HOM05D005494 ORTHO05D006689 1.1e-06 57.8 33 72.7
Glyma.05G004700 Glycine max HOM05D005494 ORTHO05D006689 1.1e-06 57.8 86 38.4
Phvul.004G010600 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 1.1e-06 57.8 50 54.0
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 1.5e-06 57.4 35 65.7
CsaV3_1G008090 Cucumis sativus L. HOM05D005494 ORTHO05D006689 1.5e-06 57.4 33 72.7
Gohir.A12G174400 Gossypium hirsutum HOM05D005494 ORTHO05D006689 1.5e-06 57.4 33 78.8
Gohir.D12G177100 Gossypium hirsutum HOM05D005494 ORTHO05D006689 1.5e-06 57.4 33 78.8
Gorai.008G189500 Gossypium raimondii HOM05D005494 ORTHO05D006689 1.5e-06 57.4 33 78.8
VMungo0464G1007 Vigna mungo HOM05D005494 ORTHO05D006689 1.5e-06 57.4 50 52.0
Duzib052G0374 Durio zibethinus HOM05D000240 ORTHO05D001153 2.0e-06 57.0 59 54.2
Phvul.009G004100 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 2.0e-06 57.0 55 56.4
Psat7g041440 Pisum sativum HOM05D005494 ORTHO05D006689 2.0e-06 57.0 33 72.7
VMungo1309G1100 Vigna mungo HOM05D000240 ORTHO05D001153 2.0e-06 57.0 55 58.2
COL.COLO4_07634 Corchorus olitorius HOM05D005494 ORTHO05D006689 2.6e-06 56.6 33 78.8
MD14G1057100 Malus domestica HOM05D005494 ORTHO05D006689 2.6e-06 56.6 33 69.7
TAR628G1129 Trochodendron aralioides HOM05D000240 ORTHO05D001153 2.6e-06 56.6 63 50.8
Gohir.A04G123800 Gossypium hirsutum HOM05D000240 ORTHO05D001153 3.3e-06 56.2 59 54.2
Gohir.D04G165900 Gossypium hirsutum HOM05D000240 ORTHO05D001153 3.3e-06 56.2 59 54.2
Gorai.012G154300 Gossypium raimondii HOM05D000240 ORTHO05D001153 3.3e-06 56.2 59 54.2
Lsat_1_v5_gn_1_11340 Lactuca sativa HOM05D005494 ORTHO05D006689 3.3e-06 56.2 69 43.5
Cpa.g.sc150.41 Carica papaya HOM05D000240 ORTHO05D001153 4.4e-06 55.8 56 58.9
Lalb_Chr07g0182431 Lupinus albus HOM05D005494 ORTHO05D006689 4.4e-06 55.8 42 59.5
Lalb_Chr08g0236101 Lupinus albus HOM05D005494 ORTHO05D006689 4.4e-06 55.8 30 76.7
Glyma.04G177200 Glycine max HOM05D005494 ORTHO05D006689 5.7e-06 55.5 33 69.7
Gohir.D13G029200 Gossypium hirsutum HOM05D000240 ORTHO05D001153 5.7e-06 55.5 59 52.5
Gorai.013G033200 Gossypium raimondii HOM05D000240 ORTHO05D001153 5.7e-06 55.5 59 52.5
QL06p038666 Quercus lobata HOM05D000045 ORTHO05D009425 5.7e-06 55.5 34 64.7
Duzib132G0039 Durio zibethinus HOM05D000240 ORTHO05D001153 7.4e-06 55.1 59 52.5
Duzib248G1652 Durio zibethinus HOM05D000240 ORTHO05D001153 7.4e-06 55.1 59 52.5
Thhalv10000203m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 7.4e-06 55.1 30 83.3
HanXRQChr02g0045331 Helianthus annuus HOM05D005494 ORTHO05D006689 7.4e-06 55.1 32 68.8
Nn5g29194 Nelumbo nucifera HOM05D000240 ORTHO05D001153 7.4e-06 55.1 56 57.1
Sabra12G0052300 Salix brachista HOM05D005494 ORTHO05D006689 7.4e-06 55.1 33 72.7
Thecc.10G120900 Theobroma cacao HOM05D005494 ORTHO05D006689 7.4e-06 55.1 86 36.0
TPR.G17080 Trifolium pratense HOM05D005494 ORTHO05D006689 7.4e-06 55.1 88 35.2
CAN.G170.85 Capsicum annuum HOM05D000240 ORTHO05D001153 9.7e-06 54.7 54 51.9
THA.LOC104814121 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 9.7e-06 54.7 56 50.0
GSVIVG01024203001 Vitis vinifera HOM05D000240 ORTHO05D001153 9.7e-06 54.7 55 58.2


User provided reference genes

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