Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 0.0e+00 1299.3 676 100.0
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 0.0e+00 1095.5 670 84.8
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 0.0e+00 1080.9 662 83.8
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 0.0e+00 1078.9 658 84.2
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 1.2e-310 1069.3 676 82.1
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 6.2e-299 1030.4 670 80.3
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.5e-297 1025.8 658 81.6
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 3.2e-295 1018.1 657 79.1
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 7.1e-295 1016.9 678 78.8
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 4.3e-292 1007.7 657 79.0
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.1e-290 1003.0 654 78.4
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 5.3e-290 1000.7 657 78.8
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 6.9e-290 1000.3 659 78.3
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 1.2e-289 999.6 664 78.8
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 4.4e-289 997.7 657 78.8
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.9e-288 995.0 659 77.7
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.2e-286 989.6 657 78.8
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 6.0e-286 987.3 670 76.9
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.6e-283 979.2 665 75.8
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 3.6e-283 978.0 662 75.8
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 1.1e-282 976.5 657 77.0
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 3.1e-282 974.9 662 75.8
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 5.3e-282 974.2 675 74.7
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.3e-280 969.5 664 75.0
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 2.9e-280 968.4 666 76.4
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 5.4e-279 964.1 665 74.6
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 5.4e-279 964.1 662 74.9
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 7.1e-279 963.8 665 75.0
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 2.7e-278 961.8 658 74.3
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 3.5e-278 961.4 660 75.3
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 4.6e-278 961.1 663 74.4
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 1.0e-277 959.9 658 75.1
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.8e-277 959.1 659 75.6
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.8e-277 959.1 656 75.5
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 3.9e-277 958.0 665 75.0
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 8.7e-277 956.8 667 74.1
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.1e-276 956.4 661 76.1
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 4.3e-276 954.5 673 74.3
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.3e-275 953.0 665 74.1
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 3.7e-275 951.4 657 76.3
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 6.2e-275 950.7 654 74.3
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 6.2e-275 950.7 649 75.5
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 1.1e-274 949.9 661 74.9
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 6.9e-274 947.2 667 73.0
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.5e-273 946.0 657 74.0
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.2e-272 942.2 654 74.6
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.1e-270 935.6 663 73.6
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 7.9e-270 933.7 653 73.7
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 3.9e-269 931.4 667 71.4
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 8.7e-269 930.2 664 72.3
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.5e-268 929.5 654 72.9
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 3.3e-268 928.3 665 72.6
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 3.3e-268 928.3 667 70.9
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 3.3e-268 928.3 655 73.9
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 5.6e-268 927.5 653 73.7
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 8.2e-267 923.7 654 73.4
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.2e-265 919.8 694 70.5
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 1.5e-265 919.5 655 72.7
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.0e-264 916.8 667 70.0
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 3.2e-263 911.8 668 70.1
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 9.3e-263 910.2 657 71.8
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 6.0e-262 907.5 661 73.1
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 2.3e-261 905.6 661 70.8
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 8.7e-261 903.7 657 73.7
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 3.3e-260 901.7 662 70.7
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.3e-259 899.8 657 71.4
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.4e-258 896.3 693 69.1
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.4e-258 896.3 693 68.8
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.5e-256 887.5 659 70.4
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.2e-255 884.8 649 71.2
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 9.4e-255 883.6 739 66.3
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.1e-254 882.5 649 71.5
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 4.6e-254 881.3 692 69.8
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 4.6e-254 881.3 644 72.2
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 1.4e-253 879.8 618 74.6
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 2.3e-253 879.0 596 76.5
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.4e-250 869.8 681 69.6
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 4.5e-249 864.8 613 74.4
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 2.9e-248 862.1 658 67.6
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 3.8e-248 861.7 604 73.8
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 3.8e-248 861.7 660 68.3
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 8.8e-245 850.5 603 73.5
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 6.5e-240 834.3 869 55.9
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 8.8e-237 823.9 592 72.8
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 6.5e-224 781.2 654 65.1
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.1e-222 776.2 490 83.1
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.2e-220 770.4 662 62.7
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 2.4e-218 762.7 848 53.4
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 7.0e-218 761.1 684 59.6
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.0e-213 747.3 690 60.7
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 8.6e-208 727.6 476 79.4
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 3.4e-204 715.7 660 59.2
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 4.0e-197 692.2 508 70.3
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 9.8e-196 687.6 574 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.3e-184 650.6 665 53.5
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.2e-177 627.5 493 68.6
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.3e-168 597.4 605 57.5
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.8e-165 587.0 569 56.2
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 6.5e-155 552.0 440 67.7
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.4e-149 533.5 437 64.3
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 8.0e-113 412.1 346 63.3
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.4e-112 411.4 464 50.0
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.5e-82 311.6 205 79.0
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.2e-81 308.5 449 43.2
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 6.8e-80 302.8 201 76.1
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 2.0e-79 301.2 232 63.4
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 4.9e-78 296.6 413 44.3
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 7.1e-69 266.2 181 74.6
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 4.6e-68 263.5 250 62.0
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 4.3e-66 256.9 285 54.0
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.6e-65 255.0 386 41.2
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.4e-61 241.9 177 68.4
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 8.7e-51 206.1 149 73.2
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 8.7e-43 179.5 404 33.7
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 4.9e-38 163.7 168 54.8
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.6e-36 158.7 92 84.8
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 2.1e-36 158.3 106 76.4
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 4.6e-36 157.1 147 57.1
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 4.6e-36 157.1 146 58.9
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.3e-33 149.1 94 76.6
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 1.2e-31 142.5 93 76.3
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 3.8e-30 137.5 89 74.2
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.1e-29 136.0 117 59.8
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 4.2e-29 134.0 79 79.7
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 7.2e-29 133.3 101 63.4
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.8e-27 128.6 174 43.7
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 2.5e-26 124.8 83 77.1
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 1.2e-23 115.9 479 29.2
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 2.0e-23 115.2 192 38.0
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.7e-22 112.1 84 71.4
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 5.0e-22 110.5 96 65.6
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 9.4e-21 106.3 90 65.6
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.0e-19 102.8 175 37.7
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 3.9e-19 100.9 65 75.4
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 5.1e-19 100.5 67 77.6
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 8.2e-17 93.2 50 88.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 8.2e-17 93.2 50 88.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 2.6e-15 88.2 61 73.8
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 7.7e-15 86.7 89 56.2
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.0e-14 86.3 50 80.0
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.7e-14 85.5 67 62.7
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 9.4e-13 79.7 58 65.5
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 4.4e-10 70.9 72 58.3
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 4.8e-09 67.4 49 67.3
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 5.3e-08 63.9 62 45.2


User provided reference genes

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