Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 4847.0 2436 100.0
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 3568.1 2437 73.0
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 3461.8 2480 71.1
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 3359.3 2448 69.8
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 3317.3 2449 68.4
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 3287.7 2373 70.0
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 3280.3 2425 69.1
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 3265.7 2474 67.5
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 3256.5 2413 68.2
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 3222.2 2458 66.9
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 3183.3 2445 66.2
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3150.1 2441 66.1
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 3142.4 2444 65.4
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 3120.9 2443 64.5
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 3118.9 2443 64.3
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3095.8 2444 64.3
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3092.0 2446 64.1
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 3089.3 2442 63.4
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3088.5 2476 62.8
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3085.8 2476 62.7
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3080.0 2476 62.6
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 3075.4 2443 63.9
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 3065.8 2393 64.9
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3062.3 2476 62.4
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3062.3 2445 64.5
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3055.8 2448 64.3
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3050.4 2442 63.2
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 3050.0 2446 63.9
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3046.9 2445 64.4
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 3045.4 2442 63.2
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3014.9 2454 62.5
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 3008.4 2443 62.0
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2974.5 2469 63.5
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2962.9 2439 61.7
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2956.4 2434 61.4
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2903.2 2443 61.2
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2886.7 2474 59.8
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2883.2 2443 60.3
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2880.1 2474 59.7
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2877.8 2396 61.9
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2869.0 2434 60.4
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2864.3 2443 60.8
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2861.6 2442 59.8
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2861.6 2438 60.0
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2858.6 2433 59.7
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2853.9 2076 70.9
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2852.8 2076 71.0
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2850.8 2444 60.0
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2846.6 2445 60.0
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2843.1 2109 68.8
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2843.1 2441 59.7
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2840.8 2441 59.6
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2834.3 2439 59.2
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2828.1 2452 59.2
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2817.7 2453 59.1
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2808.1 2490 58.2
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2798.8 2449 59.2
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2791.9 2445 60.0
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2782.3 2442 58.4
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2745.7 2462 57.8
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2745.3 2446 58.3
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2732.6 2436 58.5
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2728.7 2452 57.3
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2721.0 2436 57.6
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2696.4 2447 57.7
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2678.3 2437 56.6
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2662.1 2441 56.2
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2651.3 2448 56.4
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2650.2 2448 56.2
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2646.3 2450 56.8
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2639.0 2442 56.3
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2635.5 2444 56.2
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2624.7 2451 55.5
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2614.3 2441 56.7
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2612.0 2450 55.3
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2601.6 2439 56.0
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2601.6 2449 55.3
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2598.9 2448 54.7
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2582.0 2476 54.6
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2582.0 2446 54.8
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2576.6 2445 55.2
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2572.0 2449 54.6
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2561.9 2436 55.0
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2552.7 2472 53.9
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2546.2 2441 54.8
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2543.8 2405 55.1
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2539.6 2440 55.8
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2434.1 2273 56.2
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 2227.2 2440 49.8
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2209.9 2417 49.0
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2185.6 1846 60.0
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1941.0 2508 44.1
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1925.6 2436 44.5
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1902.5 1463 65.3
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1892.1 1463 65.1
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1835.1 1527 61.4
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1768.1 1660 56.1
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1742.6 1391 63.8
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1687.2 1461 59.8
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1585.5 1384 59.3
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1498.8 1429 56.0
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1498.0 1100 67.8
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1399.0 1560 48.0
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1323.9 1169 58.8
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1249.6 1046 61.3
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1166.4 1017 60.0
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1104.4 1042 54.5
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.9e-302 1043.9 1406 42.6
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 3.6e-288 996.5 2574 28.8
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 9.4e-281 971.8 909 54.9
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.6e-262 910.6 2116 31.6
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 9.8e-254 882.1 2162 30.4
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 6.2e-248 862.8 853 52.8
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.4e-244 851.7 772 54.0
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 6.8e-239 832.8 1496 35.8
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 2.7e-227 794.3 809 52.4
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.5e-217 761.9 581 65.2
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.9e-212 745.0 2583 26.4
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 2.1e-179 635.2 819 42.5
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 3.6e-171 607.8 458 66.6
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 3.6e-163 581.3 474 66.2
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 4.7e-155 554.3 476 62.8
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.6e-123 449.5 321 67.9
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 3.5e-118 431.8 341 66.6
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 3.9e-109 401.7 267 73.0
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 9.9e-105 387.1 381 53.3
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.0e-101 377.1 329 54.7
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 9.6e-84 317.4 430 41.6
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.4e-82 313.5 338 49.4
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.6e-75 290.0 225 63.1
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 9.0e-74 284.3 481 37.2
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.1e-68 267.3 390 42.3
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 5.3e-66 258.5 445 38.2
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 2.2e-56 226.5 277 47.7
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 8.5e-56 224.6 150 72.7
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.5e-55 221.9 274 48.9
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.4e-52 212.2 187 59.4
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 8.2e-51 208.0 241 48.5
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 7.7e-49 201.4 193 58.0
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 2.2e-48 199.9 122 79.5
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 2.7e-46 193.0 146 67.1
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 1.3e-43 184.1 321 37.4
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 4.8e-43 182.2 798 23.6
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 8.3e-43 181.4 123 70.7
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 3.5e-41 176.0 137 68.6
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.4e-37 164.1 110 73.6
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.8e-35 156.4 289 35.3
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 1.8e-34 153.7 100 76.0
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 3.8e-32 146.0 330 34.2
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.8e-30 139.8 147 47.6
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.0e-25 123.6 203 40.4
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 3.5e-25 122.9 321 28.0
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 1.3e-24 120.9 154 42.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 8.6e-24 118.2 82 70.7
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.9e-23 117.1 140 42.1
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 3.6e-22 112.8 162 44.4
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 2.4e-18 100.1 119 43.7
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.2e-17 97.8 118 43.2
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 3.6e-14 86.3 100 46.0
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 8.9e-13 81.6 106 40.6
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 3.4e-12 79.7 132 36.4
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.5e-12 78.6 127 37.8
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 7.5e-12 78.6 77 50.6
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.0e-09 68.9 65 49.2
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 1.0e-08 68.2 64 46.9
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 8.6e-08 65.1 42 78.6
Psat0ss3938g0040 Pisum sativum HOM05D001673 ORTHO05D000895 2.8e-06 60.1 39 69.2
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 3.6e-06 59.7 71 46.5


User provided reference genes

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