Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 2380.5 1112 100.0
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1997.6 1112 81.7
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1987.2 1112 81.5
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1972.6 1067 84.3
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1967.6 1079 83.7
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1949.5 1112 78.7
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1947.9 1110 78.8
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1947.6 1110 78.8
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1944.9 1111 79.5
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1940.2 1110 79.5
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1931.0 1111 78.9
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1911.7 1115 78.2
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1909.4 1110 77.6
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1904.0 1110 77.4
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1901.7 1110 77.3
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1900.9 1110 76.9
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1900.9 1121 76.8
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1897.9 1110 77.3
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1884.8 1111 77.0
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1882.5 1117 76.8
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1881.3 1113 76.7
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1880.5 1110 76.8
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1869.0 1066 80.1
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1861.3 1112 75.4
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1856.3 1112 75.5
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1854.7 1123 75.1
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1852.8 1112 74.6
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1852.0 1124 74.6
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1851.6 1111 75.5
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1840.1 1110 74.4
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1837.8 1110 74.6
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1837.4 1110 74.8
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1836.6 1110 75.7
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1833.9 1110 74.0
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1828.1 1110 74.2
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1827.0 1109 73.6
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1823.5 1101 74.7
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1818.9 1106 74.4
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1818.5 1110 73.4
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1817.7 1110 73.6
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1809.7 1112 73.7
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1808.9 1110 75.5
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1805.0 1109 72.9
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1802.3 1110 72.9
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1799.6 1112 73.6
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1799.3 1111 72.7
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1797.7 1225 68.5
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1796.2 1110 72.8
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1795.0 1105 74.2
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1793.9 1113 71.9
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1793.1 1111 73.0
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1792.3 1110 72.3
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1791.2 1112 71.3
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1789.6 1095 74.8
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1789.6 1115 73.1
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1784.2 1109 72.4
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1784.2 1096 74.1
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1783.5 1109 72.3
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1778.5 1111 72.2
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1778.1 1111 71.8
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1773.1 1111 71.8
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1770.0 1111 72.0
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1770.0 1111 72.1
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1770.0 1112 71.5
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1769.6 1112 71.9
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1767.3 1111 71.6
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1766.5 1114 70.9
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1761.5 1102 72.0
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1758.8 1104 71.9
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1757.7 988 80.1
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1757.3 1120 70.3
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1749.2 1103 72.2
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1749.2 1112 71.3
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1740.3 1107 72.4
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1735.3 1069 73.1
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1734.2 1095 71.6
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1730.3 1100 71.6
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1722.2 1125 70.6
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1720.7 1124 69.6
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1710.7 1110 70.4
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1687.9 1162 68.6
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1676.8 1119 68.2
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1651.7 1138 66.9
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1626.3 1113 65.7
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1620.9 997 75.2
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1567.7 1076 65.9
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1547.7 914 76.8
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1545.0 898 78.5
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1434.9 1034 64.8
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1429.1 832 78.4
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1395.2 750 84.0
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1367.8 830 75.2
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1347.4 1133 54.8
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1330.1 1113 56.4
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1299.6 762 78.6
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1294.3 739 79.0
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1287.7 1113 54.4
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1195.3 1118 50.8
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1151.3 667 77.1
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1100.9 690 73.5
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 0.0e+00 1080.9 1141 48.1
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 5.8e-270 934.9 693 64.1
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 2.1e-256 889.8 498 81.5
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.5e-241 840.5 568 66.9
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.5e-230 803.9 518 71.0
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 3.8e-229 799.3 518 71.0
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 2.7e-182 643.7 385 77.1
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 2.2e-168 597.4 1504 29.6
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 6.7e-149 532.7 617 44.9
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 4.9e-144 516.5 284 82.0
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.2e-129 468.8 828 35.9
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 4.6e-126 456.8 240 85.0
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.7e-120 438.3 272 75.4
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 3.3e-108 397.5 586 38.9
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 4.5e-97 360.5 194 83.5
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 4.0e-93 347.4 259 60.2
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 5.9e-89 333.6 201 74.6
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 3.3e-87 327.8 174 85.6
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.7e-80 305.4 208 68.3
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 6.0e-73 280.4 156 78.8
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 8.9e-69 266.5 164 75.6
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 3.9e-64 251.1 207 55.1
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 2.0e-60 238.8 165 64.8
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.4e-58 232.6 123 84.6
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 1.4e-45 189.5 124 71.8
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 1.5e-39 169.5 198 44.9
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.8e-37 162.5 140 51.4
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 5.8e-36 157.5 173 47.4
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 7.6e-36 157.1 89 80.9
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-35 156.4 82 80.5
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.7e-35 156.0 105 63.8
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.7e-33 148.7 182 44.5
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 7.9e-33 147.1 142 51.4
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 7.9e-33 147.1 133 53.4
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 4.8e-30 137.9 96 67.7
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 2.0e-28 132.5 140 50.7
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.0e-28 132.5 75 74.7
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 2.2e-27 129.0 132 49.2
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 6.0e-25 120.9 53 96.2
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 2.8e-22 112.1 65 73.8
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 2.8e-22 112.1 117 51.3
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.4e-21 109.0 100 54.0
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 3.2e-18 98.6 101 47.5
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 4.2e-18 98.2 84 56.0
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 5.5e-18 97.8 101 47.5
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 6.1e-17 94.4 136 44.1
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 1.8e-16 92.8 44 86.4
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.1e-15 90.1 44 86.4
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 9.7e-15 87.0 44 81.8
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 9.7e-15 87.0 84 52.4
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 3.7e-14 85.1 50 74.0
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 1.5e-07 63.2 61 52.5
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 2.0e-07 62.8 27 100.0
FAN12G0942 Fragaria x ananassa HOM05D018336 ORTHO05D006090 9.7e-07 60.5 47 57.4
Lsat_1_v5_gn_4_164861 Lactuca sativa HOM05D001159 ORTHO05D001712 1.7e-06 59.7 41 58.5
Lsat_1_v5_gn_1_71901 Lactuca sativa HOM05D017333 ORTHO05D017063 2.2e-06 59.3 37 62.2
Lsat_1_v5_gn_2_15720 Lactuca sativa HOM05D001670 ORTHO05D016190 2.2e-06 59.3 38 60.5
Lsat_1_v5_gn_1_88920 Lactuca sativa HOM05D000207 ORTHO05D001482 3.7e-06 58.5 43 53.5
Lsat_1_v5_gn_5_41360 Lactuca sativa HOM05D000207 ORTHO05D016190 4.8e-06 58.2 38 57.9
Lsat_1_v5_gn_8_34420 Lactuca sativa HOM05D000274 ORTHO05D001466 4.8e-06 58.2 38 57.9
Lsat_1_v5_gn_5_54380 Lactuca sativa HOM05D000274 ORTHO05D001466 6.3e-06 57.8 38 57.9
Lsat_1_v5_gn_1_91120 Lactuca sativa HOM05D002740 ORTHO05D003126 8.2e-06 57.4 36 61.1
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 8.2e-06 57.4 90 35.6
Lsat_1_v5_gn_8_57801 Lactuca sativa HOM05D002290 ORTHO05D017063 8.2e-06 57.4 36 61.1


User provided reference genes

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