Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 0.0e+00 1579.7 830 100.0
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 0.0e+00 1129.8 820 73.3
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1105.9 817 70.4
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1102.4 823 68.8
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 0.0e+00 1086.2 799 70.8
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 4.0e-311 1071.2 834 66.4
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 5.1e-311 1070.8 805 69.9
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 4.0e-308 1061.2 834 65.5
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 2.1e-301 1038.9 813 66.2
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 1.0e-295 1020.0 775 67.7
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.0e-295 1020.0 824 62.6
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 8.4e-290 1000.3 810 63.6
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.0e-287 993.4 879 60.9
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.5e-281 972.2 768 70.2
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.3e-279 966.5 826 59.7
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 2.5e-278 962.2 826 63.4
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 3.3e-278 961.8 800 65.0
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 6.9e-276 954.1 777 62.9
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 6.5e-274 947.6 839 60.8
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 7.2e-273 944.1 770 63.4
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.6e-272 943.0 832 63.7
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 8.8e-263 910.6 831 58.0
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 6.3e-261 904.4 826 57.9
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 4.1e-260 901.7 832 57.9
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.3e-258 896.7 795 58.7
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 5.0e-258 894.8 831 57.8
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.4e-257 893.3 623 72.7
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 2.5e-257 892.5 828 57.2
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 8.8e-255 884.0 741 66.4
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 7.4e-254 880.9 867 54.9
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.3e-253 880.2 813 57.9
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 2.3e-247 859.4 834 58.4
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.7e-245 853.2 946 52.3
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 8.3e-245 850.9 771 58.4
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 7.0e-244 847.8 833 55.8
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 2.7e-243 845.9 831 59.9
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 3.8e-242 842.0 903 52.2
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 8.5e-242 840.9 803 60.8
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 1.6e-240 836.6 775 55.6
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 2.1e-240 836.3 801 59.4
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 1.4e-239 833.6 819 58.0
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 4.0e-239 832.0 823 58.9
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.4e-236 823.5 806 54.7
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 1.8e-236 823.2 798 55.9
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 5.4e-236 821.6 835 54.6
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 7.7e-235 817.8 772 55.6
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 7.7e-235 817.8 790 54.1
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 1.3e-234 817.0 791 54.0
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 1.7e-234 816.6 823 54.1
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.9e-234 815.8 831 54.2
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 3.8e-234 815.5 777 55.2
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 1.9e-233 813.1 768 55.3
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 1.9e-233 813.1 816 55.5
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 2.5e-233 812.8 813 55.6
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 1.2e-232 810.4 779 56.0
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 4.7e-232 808.5 778 54.4
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.0e-231 807.4 804 53.6
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 1.8e-231 806.6 831 51.7
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 9.2e-228 794.3 797 52.7
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 3.5e-227 792.3 780 55.1
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 4.5e-227 792.0 798 53.0
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 4.5e-227 792.0 788 55.5
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 7.8e-227 791.2 800 52.6
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 1.7e-226 790.0 803 52.2
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 1.9e-225 786.6 790 53.5
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 4.3e-225 785.4 882 51.2
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 6.1e-224 781.6 752 55.7
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 1.0e-223 780.8 777 55.0
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 1.7e-221 773.5 823 51.8
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 4.3e-217 758.8 835 51.7
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 2.2e-213 746.5 806 50.9
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 6.4e-213 745.0 786 56.0
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 6.4e-213 745.0 867 50.9
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 3.2e-212 742.7 859 49.2
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 7.3e-209 731.5 809 49.4
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 6.2e-208 728.4 720 53.9
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 8.3e-205 718.0 866 51.5
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 8.6e-202 708.0 871 50.1
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 3.6e-200 702.6 590 60.5
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.7e-197 693.7 848 47.3
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.1e-196 691.0 818 48.3
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 1.3e-189 667.5 805 50.4
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.9e-189 666.4 647 57.0
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 1.4e-188 664.1 772 48.2
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 2.4e-188 663.3 619 56.4
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 1.6e-187 660.6 785 45.4
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 8.1e-184 648.3 620 54.8
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.3e-181 641.0 635 59.5
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 2.9e-181 639.8 851 43.1
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 9.3e-180 634.8 713 49.9
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 7.9e-179 631.7 584 55.8
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 3.1e-175 619.8 600 53.0
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 8.2e-160 568.5 538 55.6
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 3.0e-154 550.1 791 39.9
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 5.0e-141 506.1 594 49.2
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 6.7e-138 495.7 631 45.6
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 4.7e-123 446.4 656 41.8
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 6.8e-122 442.6 498 47.8
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 2.5e-108 397.5 358 58.4
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 1.7e-77 295.0 340 49.7
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 2.4e-74 284.6 575 36.7
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 5.1e-69 266.9 262 53.8
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 6.6e-69 266.5 374 44.4
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 1.9e-60 238.4 219 56.6
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 1.1e-55 222.6 159 71.1
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 2.0e-49 201.8 703 30.9
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 2.1e-46 191.8 147 70.7
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 2.1e-46 191.8 147 70.7
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 6.1e-46 190.3 769 29.1
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 1.9e-44 185.3 597 25.3
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 3.7e-43 181.0 156 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 7.2e-39 166.8 471 28.5
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 7.9e-38 163.3 623 23.9
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 7.9e-38 163.3 132 60.6
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 1.5e-33 149.1 148 50.7
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 1.5e-33 149.1 148 50.7
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 1.3e-32 146.0 120 60.8
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 6.7e-29 133.7 118 55.1
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 4.0e-21 107.8 85 60.0
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 6.7e-21 107.1 87 59.8
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 1.9e-15 89.0 79 55.7
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 3.6e-14 84.7 71 64.8
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 1.7e-11 75.9 79 51.9
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 4.8e-11 74.3 49 69.4
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 8.5e-08 63.5 84 39.3
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 4.2e-07 61.2 59 44.1
Lsat_1_v5_gn_0_17581 Lactuca sativa HOM05D000524 ORTHO05D011576 5.5e-07 60.8 50 50.0
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 7.2e-07 60.5 53 47.2
Lsat_1_v5_gn_5_162860 Lactuca sativa HOM05D001044 ORTHO05D006993 9.4e-07 60.1 53 47.2
Lsat_1_v5_gn_5_40941 Lactuca sativa HOM05D002610 ORTHO05D011576 9.4e-07 60.1 107 30.8
Lsat_1_v5_gn_8_46300 Lactuca sativa HOM05D005706 ORTHO05D007474 9.4e-07 60.1 359 20.9
Lsat_1_v5_gn_9_108561 Lactuca sativa HOM05D018531 ORTHO05D011576 9.4e-07 60.1 54 46.3
Lsat_1_v5_gn_5_86001 Lactuca sativa HOM05D005833 ORTHO05D011576 1.2e-06 59.7 54 48.1
Lsat_1_v5_gn_8_149561 Lactuca sativa HOM05D005833 ORTHO05D011576 1.6e-06 59.3 54 46.3
Lsat_1_v5_gn_0_21360 Lactuca sativa HOM05D001049 ORTHO05D015148 2.1e-06 58.9 54 46.3
Lsat_1_v5_gn_2_68420 Lactuca sativa HOM05D005833 ORTHO05D011576 2.1e-06 58.9 54 48.1
Lsat_1_v5_gn_5_130920 Lactuca sativa HOM05D001159 ORTHO05D011576 2.1e-06 58.9 54 46.3
Lsat_1_v5_gn_7_13280 Lactuca sativa HOM05D002352 ORTHO05D000385 2.1e-06 58.9 49 51.0
Lsat_1_v5_gn_9_66700 Lactuca sativa HOM05D029873 ORTHO05D011576 2.1e-06 58.9 55 45.5
Lsat_1_v5_gn_4_72121 Lactuca sativa HOM05D018531 ORTHO05D011576 2.7e-06 58.5 54 46.3
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 3.6e-06 58.2 50 48.0
Lsat_1_v5_gn_4_20761 Lactuca sativa HOM05D002313 ORTHO05D014289 3.6e-06 58.2 54 46.3
Lsat_1_v5_gn_4_21621 Lactuca sativa HOM05D000942 ORTHO05D011576 3.6e-06 58.2 54 46.3
Lsat_1_v5_gn_5_140921 Lactuca sativa HOM05D000200 ORTHO05D000262 3.6e-06 58.2 50 48.0
Lsat_1_v5_gn_7_11541 Lactuca sativa HOM05D002548 ORTHO05D011576 3.6e-06 58.2 54 46.3
Lsat_1_v5_gn_7_70041 Lactuca sativa HOM05D018531 ORTHO05D011576 3.6e-06 58.2 49 49.0
Lsat_1_v5_gn_1_102621 Lactuca sativa HOM05D018531 ORTHO05D011576 4.7e-06 57.8 49 49.0
Lsat_1_v5_gn_1_129260 Lactuca sativa HOM05D005833 ORTHO05D011576 4.7e-06 57.8 52 46.2
Lsat_1_v5_gn_3_55481 Lactuca sativa HOM05D002352 ORTHO05D011576 4.7e-06 57.8 49 49.0


User provided reference genes

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