Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.2e-110 403.3 212 100.0
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 3.5e-67 258.8 161 85.1
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 6.0e-67 258.1 161 83.9
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 6.0e-67 258.1 161 83.2
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 5.1e-66 255.0 162 83.3
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 8.7e-66 254.2 161 83.2
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 2.8e-64 249.2 161 79.5
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.8e-64 249.2 161 82.0
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 3.7e-64 248.8 161 80.1
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 1.4e-63 246.9 162 80.2
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.8e-63 246.5 162 78.4
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.4e-63 246.1 161 78.9
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 4.1e-63 245.4 162 79.0
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 4.1e-63 245.4 162 77.8
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 9.0e-63 244.2 161 78.9
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 1.2e-62 243.8 161 80.1
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 1.5e-62 243.4 161 78.9
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 1.5e-62 243.4 161 79.5
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 2.6e-62 242.7 161 79.5
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.6e-62 242.7 162 77.8
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 3.4e-62 242.3 161 78.9
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.8e-62 241.5 162 78.4
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 5.8e-62 241.5 162 79.0
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 5.8e-62 241.5 161 80.1
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 7.6e-62 241.1 163 79.8
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 1.0e-61 240.7 161 78.3
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.7e-61 240.0 161 78.3
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.7e-61 240.0 161 75.8
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 2.9e-61 239.2 161 76.4
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 3.8e-61 238.8 161 79.5
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 3.8e-61 238.8 161 73.3
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 5.0e-61 238.4 163 78.5
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 6.5e-61 238.0 161 75.8
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.9e-60 236.5 161 73.3
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 3.2e-60 235.7 163 77.3
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 7.2e-60 234.6 161 75.8
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.2e-59 233.8 162 77.8
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 1.6e-59 233.4 163 76.7
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 1.6e-59 233.4 161 73.9
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 2.7e-59 232.6 161 74.5
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 3.5e-59 232.3 164 76.2
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 3.5e-59 232.3 161 76.4
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 4.6e-59 231.9 161 74.5
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 4.6e-59 231.9 161 74.5
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 7.9e-59 231.1 161 75.8
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 7.9e-59 231.1 162 74.1
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.3e-58 230.3 161 75.2
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.3e-58 230.3 162 76.5
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.3e-58 230.3 165 77.6
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 1.3e-58 230.3 161 75.2
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.8e-58 229.9 161 75.2
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 2.3e-58 229.6 162 76.5
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 2.3e-58 229.6 161 76.4
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 3.3e-57 225.7 162 75.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 3.3e-57 225.7 155 78.1
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 4.3e-57 225.3 162 74.1
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.3e-57 225.3 162 74.7
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 7.4e-57 224.6 161 72.7
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 1.3e-56 223.8 161 73.9
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 2.8e-56 222.6 162 75.9
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 3.7e-56 222.2 159 71.7
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 4.8e-56 221.9 170 68.2
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 6.3e-56 221.5 157 75.8
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 6.3e-56 221.5 161 71.4
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.1e-55 220.7 165 76.4
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.1e-55 220.7 158 70.9
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.4e-55 220.3 165 71.5
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.4e-55 219.5 161 72.0
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 9.0e-55 217.6 161 72.0
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 4.5e-54 215.3 164 68.3
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 4.5e-54 215.3 161 70.8
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 4.5e-54 215.3 163 70.6
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.0e-53 214.2 161 72.7
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 1.0e-53 214.2 163 71.8
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.7e-53 213.4 164 71.3
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 1.7e-53 213.4 165 69.7
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 2.9e-53 212.6 164 70.1
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 8.5e-53 211.1 162 71.0
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 8.5e-53 211.1 162 70.4
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 8.5e-53 211.1 161 66.5
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 8.5e-53 211.1 161 68.9
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 1.4e-52 210.3 163 69.9
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.9e-52 209.9 171 64.9
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 1.9e-52 209.9 164 69.5
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.9e-52 209.9 161 68.3
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-52 209.9 161 67.7
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-52 209.9 161 67.7
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-52 209.9 161 68.3
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.9e-52 209.9 161 67.7
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.9e-52 209.9 166 67.5
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 2.5e-52 209.5 161 68.3
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.5e-52 209.5 164 70.1
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 2.5e-52 209.5 162 69.8
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 3.2e-52 209.1 164 70.1
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 4.2e-52 208.8 164 69.5
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 5.5e-52 208.4 161 69.6
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 9.4e-52 207.6 162 69.8
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 9.4e-52 207.6 161 67.1
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 9.4e-52 207.6 161 68.3
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.6e-51 206.8 163 69.3
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.6e-51 206.8 163 69.3
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.1e-51 206.5 161 68.9
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.1e-51 206.5 162 68.5
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.7e-51 206.1 171 65.5
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 2.7e-51 206.1 161 67.1
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 2.7e-51 206.1 161 67.1
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 2.7e-51 206.1 161 67.1
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 4.6e-51 205.3 161 67.7
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 4.6e-51 205.3 161 67.7
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 6.1e-51 204.9 148 77.7
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 7.9e-51 204.5 163 68.7
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 7.9e-51 204.5 161 67.7
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 7.9e-51 204.5 161 67.7
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 7.9e-51 204.5 162 69.1
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 7.9e-51 204.5 161 68.3
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.0e-50 204.1 161 67.1
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.4e-50 203.8 163 65.6
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.4e-50 203.8 161 67.7
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 1.4e-50 203.8 168 63.1
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.8e-50 203.4 161 67.1
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 1.8e-50 203.4 161 67.1
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 3.0e-50 202.6 163 68.1
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 3.0e-50 202.6 163 68.1
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 3.0e-50 202.6 163 68.1
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 3.9e-50 202.2 162 67.9
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 3.9e-50 202.2 162 66.7
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.9e-50 202.2 161 68.3
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 8.8e-50 201.1 163 67.5
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 3.3e-49 199.1 150 70.0
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 3.3e-49 199.1 162 67.3
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 4.3e-49 198.7 163 67.5
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 5.7e-49 198.4 162 64.8
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 9.7e-49 197.6 163 66.3
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.7e-48 196.8 159 65.4
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.7e-48 196.8 161 65.2
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.7e-48 196.8 168 64.9
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 9.1e-47 191.0 163 65.6
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 3.4e-46 189.1 161 61.5
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 5.9e-46 188.3 101 89.1
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.8e-42 176.8 94 88.3
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 9.7e-41 171.0 94 83.0
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 7.7e-38 161.4 120 68.3
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 5.0e-37 158.7 162 58.6
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 5.5e-36 155.2 92 77.2
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 1.6e-35 153.7 169 55.6
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 6.1e-35 151.8 163 55.8
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 8.0e-35 151.4 162 56.8
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.8e-34 150.2 163 50.3
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 1.4e-31 140.6 169 47.9
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.4e-31 139.8 163 47.9
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 1.2e-30 137.5 167 45.5
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 5.9e-30 135.2 210 43.8
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.2e-29 133.3 162 44.4
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 3.4e-25 119.4 162 48.8
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 5.7e-25 118.6 124 50.8
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 3.7e-24 115.9 162 43.8
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 1.1e-23 114.4 168 51.2
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 4.1e-23 112.5 132 44.7
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 9.1e-23 111.3 155 45.8
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.3e-21 107.5 62 74.2
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.8e-21 105.9 62 72.6
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.0e-18 96.3 81 59.3
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 9.2e-15 84.7 59 64.4
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 2.0e-14 83.6 69 78.3
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.6e-11 73.9 36 88.9
TAR628G0544 Trochodendron aralioides HOM05D004247 ORTHO05D004994 3.4e-09 66.2 64 73.4


User provided reference genes

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