Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 3.9e-165 585.1 382 100.0
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 6.3e-115 418.3 392 65.1
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 4.4e-108 395.6 221 86.9
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.3e-107 394.0 221 86.9
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.7e-107 393.7 221 88.2
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 8.2e-107 391.3 221 88.2
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 2.4e-106 389.8 221 87.8
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 4.1e-106 389.0 221 88.2
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 4.1e-106 389.0 221 88.2
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 4.1e-106 389.0 220 87.3
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 4.1e-106 389.0 221 86.9
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 7.0e-106 388.3 221 87.8
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.0e-105 386.7 221 87.8
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 1.0e-104 384.4 221 84.6
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 1.0e-104 384.4 221 83.3
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 2.2e-104 383.3 221 83.3
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 3.8e-104 382.5 219 85.8
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 5.0e-104 382.1 221 86.9
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 5.0e-104 382.1 221 86.9
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 5.0e-104 382.1 221 85.5
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 6.5e-104 381.7 221 83.7
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.1e-103 380.9 221 86.9
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.5e-103 380.6 221 85.5
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 3.2e-103 379.4 215 88.4
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 4.2e-103 379.0 221 85.1
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 5.5e-103 378.6 221 82.4
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 7.2e-103 378.3 224 85.7
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 7.2e-103 378.3 221 86.4
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 9.4e-103 377.9 221 84.2
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 1.2e-102 377.5 221 84.2
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 2.1e-102 376.7 221 83.7
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 2.1e-102 376.7 221 85.1
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 6.1e-102 375.2 221 85.5
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 8.0e-102 374.8 221 85.5
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.4e-101 374.0 221 84.2
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.8e-101 373.6 223 83.9
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.8e-101 373.6 221 84.2
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 1.8e-101 373.6 221 83.3
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 2.3e-101 373.2 221 83.7
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 4.0e-101 372.5 221 85.5
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 6.8e-101 371.7 221 83.3
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 6.8e-101 371.7 221 83.7
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 8.8e-101 371.3 221 85.5
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 8.8e-101 371.3 221 82.8
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 8.8e-101 371.3 221 82.8
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 8.8e-101 371.3 221 82.8
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 2.0e-100 370.2 221 81.0
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 2.6e-100 369.8 221 84.6
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 3.4e-100 369.4 221 81.0
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 3.4e-100 369.4 270 73.3
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 3.4e-100 369.4 221 84.2
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 3.4e-100 369.4 221 84.2
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 4.4e-100 369.0 221 80.5
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 7.5e-100 368.2 221 85.1
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 7.5e-100 368.2 221 80.5
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 9.8e-100 367.9 221 80.1
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 1.3e-99 367.5 221 82.4
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 2.2e-99 366.7 221 83.3
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 3.7e-99 365.9 221 80.1
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 3.7e-99 365.9 221 83.3
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 1.1e-98 364.4 273 72.9
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.8e-98 363.6 221 79.2
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.8e-98 363.6 221 81.0
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 1.8e-98 363.6 221 82.8
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.8e-98 363.6 239 77.4
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.1e-98 362.8 221 81.0
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 5.4e-98 362.1 221 84.2
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 3.5e-97 359.4 188 89.4
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.3e-96 357.5 235 76.6
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 5.0e-96 355.5 219 80.8
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.5e-95 354.0 190 87.4
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 4.2e-95 352.4 190 87.4
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 4.2e-95 352.4 190 88.9
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 5.5e-95 352.1 239 73.2
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.2e-94 350.9 216 83.3
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.2e-94 350.9 216 83.3
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.1e-94 350.1 190 86.8
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 2.1e-94 350.1 190 86.3
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 3.6e-94 349.4 221 81.9
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 6.1e-94 348.6 190 87.4
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 1.4e-93 347.4 190 85.8
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 2.3e-93 346.7 219 79.5
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 6.8e-93 345.1 221 79.2
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 6.8e-93 345.1 221 78.3
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 6.8e-93 345.1 221 78.3
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 6.8e-93 345.1 221 78.3
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 6.8e-93 345.1 190 83.7
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.2e-92 344.4 190 83.7
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 2.0e-92 343.6 190 83.7
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 5.7e-92 342.0 190 83.2
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 7.5e-92 341.7 190 83.2
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 7.5e-92 341.7 221 76.5
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.7e-91 340.5 190 82.6
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.7e-91 340.5 190 84.2
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 2.8e-91 339.7 190 83.2
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.4e-90 337.4 217 80.6
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.4e-90 337.4 190 83.7
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 2.4e-90 336.7 190 83.7
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 1.2e-89 334.3 190 83.2
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-88 331.3 190 82.6
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 5.0e-88 328.9 221 75.1
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 6.6e-88 328.6 214 76.2
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.5e-87 327.4 213 73.7
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.5e-87 327.4 197 80.2
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 2.1e-86 323.6 266 63.9
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 3.6e-86 322.8 190 81.1
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 1.8e-85 320.5 221 78.3
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 5.2e-85 318.9 211 74.4
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 6.8e-85 318.5 190 79.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 8.9e-85 318.2 218 72.0
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 3.4e-84 316.2 190 79.5
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 4.9e-83 312.4 167 87.4
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 1.4e-82 310.8 200 76.5
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.8e-82 310.5 167 87.4
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 2.0e-81 307.0 186 78.5
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.2e-75 287.0 225 65.8
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 5.2e-69 265.8 190 61.6
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 2.4e-66 256.9 216 65.3
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 1.2e-54 218.0 185 54.1
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 2.6e-52 210.3 184 54.9
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 9.9e-52 208.4 170 65.3
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 3.8e-51 206.5 192 54.2
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 4.8e-46 189.5 168 63.1
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 3.1e-45 186.8 97 88.7
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.9e-43 180.3 124 71.0
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.1e-41 174.1 94 86.2
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 2.4e-29 134.0 83 86.7
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.1e-25 120.9 105 58.1
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.3e-23 113.2 70 75.7
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.3e-23 113.2 70 75.7
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 5.1e-16 89.7 50 82.0
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 1.3e-14 85.1 42 92.9
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 2.4e-13 80.9 69 59.4
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 3.4e-12 77.0 53 60.4
ATR0693G087 Amborella trichopoda HOM05D005421 ORTHO05D026565 1.4e-08 65.1 54 77.8
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 2.3e-08 64.3 52 65.4


User provided reference genes

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