Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 5.3e-128 461.1 241 100.0
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 5.9e-111 404.4 240 85.0
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 4.3e-109 398.3 240 85.0
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 3.2e-80 302.4 241 70.1
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 4.1e-80 302.0 240 66.7
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 5.1e-78 295.0 241 66.0
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 1.1e-77 293.9 240 67.9
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 2.5e-77 292.7 240 67.5
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 3.1e-75 285.8 240 65.8
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 6.8e-75 284.6 242 63.2
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 8.9e-75 284.3 243 66.7
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 3.4e-74 282.3 242 62.8
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 7.6e-74 281.2 240 65.8
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 1.3e-73 280.4 239 64.4
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 1.6e-71 273.5 240 64.6
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 7.8e-71 271.2 240 62.1
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.0e-70 270.8 241 63.9
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 1.3e-70 270.4 241 61.8
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 5.1e-70 268.5 240 66.2
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 5.1e-70 268.5 240 61.2
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 8.7e-70 267.7 240 61.2
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 7.3e-69 264.6 240 65.0
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 6.9e-67 258.1 241 63.9
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 4.4e-66 255.4 240 65.4
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 7.6e-66 254.6 238 61.3
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 9.9e-66 254.2 240 62.5
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 3.8e-65 252.3 244 62.3
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 6.4e-65 251.5 241 62.7
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 1.4e-64 250.4 239 61.1
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 3.2e-64 249.2 243 60.9
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 4.2e-64 248.8 240 56.2
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.2e-63 247.3 242 60.7
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.1e-63 246.5 240 61.7
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 2.1e-63 246.5 239 57.7
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 2.1e-63 246.5 245 60.8
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 3.5e-63 245.7 240 57.5
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 4.6e-63 245.4 242 57.0
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 6.0e-63 245.0 242 60.3
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 7.9e-63 244.6 240 57.5
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.1e-61 240.7 242 59.5
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 2.5e-61 239.6 242 56.2
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 5.6e-61 238.4 242 59.1
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 9.6e-61 237.7 240 56.7
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 2.1e-60 236.5 241 57.3
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 2.1e-60 236.5 241 57.3
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 2.1e-60 236.5 243 59.3
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 2.8e-60 236.1 231 56.7
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 1.5e-58 230.3 241 52.7
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 2.6e-58 229.6 240 56.7
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 3.8e-57 225.7 242 56.2
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 3.8e-57 225.7 220 55.9
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 1.2e-55 220.7 129 81.4
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 1.2e-55 220.7 214 56.5
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 1.6e-55 220.3 244 53.7
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 2.3e-54 216.5 214 56.1
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 1.1e-53 214.2 239 53.6
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 2.5e-53 213.0 242 52.9
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 1.6e-52 210.3 250 51.6
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 2.8e-52 209.5 233 52.8
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 2.8e-52 209.5 242 53.7
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 8.1e-52 208.0 239 54.4
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 8.1e-52 208.0 243 50.2
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 1.1e-51 207.6 245 51.4
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 5.3e-51 205.3 249 49.0
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 6.9e-51 204.9 225 54.2
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.5e-50 203.8 211 53.1
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.5e-50 203.8 211 53.1
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 2.6e-50 203.0 242 51.7
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 1.0e-49 201.1 243 49.8
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 2.2e-49 199.9 204 53.9
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 1.1e-48 197.6 241 50.6
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 1.1e-48 197.6 242 49.2
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 1.9e-48 196.8 264 48.1
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 7.1e-48 194.9 240 51.7
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 1.6e-47 193.7 241 49.8
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 4.6e-47 192.2 240 50.8
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 2.3e-46 189.9 229 52.0
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 1.9e-45 186.8 241 48.1
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 5.7e-45 185.3 239 48.1
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 4.8e-44 182.2 215 52.1
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 2.4e-43 179.9 241 47.3
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 4.1e-43 179.1 225 49.3
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.0e-42 176.8 246 47.6
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 5.5e-40 168.7 243 48.6
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 5.5e-40 168.7 168 57.1
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 2.8e-36 156.4 255 49.0
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.8e-35 153.7 243 47.7
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 2.4e-35 153.3 256 47.7
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 6.5e-33 145.2 253 44.3
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 8.5e-33 144.8 252 41.3
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 8.5e-33 144.8 202 46.5
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 3.9e-30 136.0 221 41.6
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 8.8e-30 134.8 204 43.1
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 3.3e-29 132.9 251 41.4
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 3.3e-29 132.9 251 41.4
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 2.2e-28 130.2 104 71.2
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 8.2e-28 128.3 244 41.8
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 1.1e-27 127.9 270 40.0
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 2.4e-27 126.7 240 36.2
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 1.5e-26 124.0 237 37.6
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.5e-26 124.0 243 41.2
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.6e-26 123.2 203 39.9
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 3.4e-26 122.9 240 40.0
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 3.4e-26 122.9 253 37.5
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 1.0e-25 121.3 240 39.6
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 1.0e-25 121.3 240 39.6
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 2.2e-25 120.2 240 39.6
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 2.2e-25 120.2 240 39.6
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 5.0e-25 119.0 127 52.8
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 1.9e-24 117.1 270 35.9
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 4.2e-24 115.9 254 40.2
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 7.2e-24 115.2 206 39.8
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 1.4e-22 110.9 259 35.5
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 1.8e-22 110.5 245 34.7
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 3.9e-22 109.4 224 37.1
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 2.2e-20 103.6 224 37.9
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 1.1e-19 101.3 227 37.4
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 2.2e-17 93.6 173 42.2
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 2.1e-15 87.0 243 30.9
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 3.6e-15 86.3 114 55.3
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 1.8e-14 84.0 208 35.6
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 5.7e-13 79.0 188 37.8
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 1.4e-11 74.3 131 37.4
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 3.5e-10 69.7 134 44.8
SGA_v2.0_scaffold94G28577 Striga asiatica HOM05D001755 ORTHO05D001665 3.8e-09 66.2 221 25.8
Aqoxy6G01464 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 1.5e-08 64.3 237 27.8
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 1.9e-08 63.9 261 26.4
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 5.5e-08 62.4 129 32.6
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 7.2e-08 62.0 44 56.8
Oeu049222.1 Olea europaea HOM05D001755 ORTHO05D001665 2.1e-07 60.5 294 26.2
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 2.7e-07 60.1 245 25.3
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 8.0e-07 58.5 196 26.0
Sed0009224 Sechium edule HOM05D001755 ORTHO05D001665 8.0e-07 58.5 235 24.3
HPP92_004086 Vanilla planifolia HOM05D001755 ORTHO05D001665 1.0e-06 58.2 219 25.6
HPP92_004103 Vanilla planifolia HOM05D001755 ORTHO05D001665 1.0e-06 58.2 219 25.6
Ah.05g170640 Amaranthus hybridus HOM05D001755 ORTHO05D001665 1.4e-06 57.8 239 25.9
Aqoxy5G01330 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 1.4e-06 57.8 232 25.4
Oeu029675.1 Olea europaea HOM05D001755 ORTHO05D001665 1.4e-06 57.8 303 22.1
Sc26g0000240 Simmondsia chinensis HOM05D001755 ORTHO05D001665 1.4e-06 57.8 204 27.9
Lj4C91T0 Lonicera japonica HOM05D001755 ORTHO05D001665 1.8e-06 57.4 280 24.6
Manes.18G061300 Manihot esculenta HOM05D001755 ORTHO05D001665 2.3e-06 57.0 243 26.3
CAN.G1658.8 Capsicum annuum HOM05D001755 ORTHO05D001665 3.0e-06 56.6 242 24.8
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 3.0e-06 56.6 243 25.1
MSTRG.27812 Avicennia marina HOM05D001755 ORTHO05D001665 4.0e-06 56.2 239 25.1
ECA246G0388 Erigeron canadensis HOM05D001755 ORTHO05D001665 4.0e-06 56.2 244 26.6
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 4.0e-06 56.2 239 25.5
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 6.8e-06 55.5 224 26.8
CsaV3_7G007030 Cucumis sativus L. HOM05D001755 ORTHO05D001665 8.8e-06 55.1 232 25.9
Nn5g29941 Nelumbo nucifera HOM05D001755 ORTHO05D001665 8.8e-06 55.1 210 25.7
THA.LOC104806804 Tarenaya hassleriana HOM05D001755 ORTHO05D001665 8.8e-06 55.1 246 24.8


User provided reference genes

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