Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.9e-107 392.5 198 100.0
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-96 356.7 198 90.4
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-96 356.7 198 90.4
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.9e-95 352.1 198 89.4
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 4.1e-94 348.2 196 91.8
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 7.1e-94 347.4 195 88.7
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 3.4e-88 328.6 246 72.4
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 2.3e-84 315.8 198 79.3
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.3e-83 311.6 228 71.9
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 9.0e-81 303.9 230 70.9
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 9.9e-80 300.4 198 75.8
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.3e-76 289.3 225 68.4
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 4.3e-75 285.0 196 69.9
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 6.2e-74 281.2 195 68.7
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.4e-73 279.3 198 69.2
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 4.0e-73 278.5 231 64.1
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 2.6e-72 275.8 199 69.8
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 3.4e-72 275.4 225 64.0
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 4.5e-72 275.0 231 64.1
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 7.6e-72 274.2 225 64.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 1.3e-71 273.5 196 67.3
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 2.9e-71 272.3 197 68.0
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 2.9e-71 272.3 228 63.6
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 3.8e-71 271.9 228 63.6
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 4.9e-71 271.6 198 67.7
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 8.4e-71 270.8 198 67.2
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.9e-70 269.6 222 64.4
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 1.9e-70 269.6 200 69.5
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 3.2e-70 268.9 224 62.9
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 5.5e-70 268.1 199 67.8
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 9.3e-70 267.3 201 68.7
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 1.2e-69 266.9 201 68.7
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 2.1e-69 266.2 198 65.2
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 2.7e-69 265.8 200 64.5
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 3.5e-69 265.4 206 68.4
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 6.0e-69 264.6 199 66.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 8.7e-68 260.8 200 66.5
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.1e-67 260.4 201 67.7
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.1e-67 260.4 194 64.4
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 3.3e-67 258.8 195 65.1
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 7.4e-67 257.7 229 60.3
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 9.6e-67 257.3 198 63.1
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-66 256.9 200 65.0
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 2.8e-66 255.8 202 63.4
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.7e-66 255.4 189 65.1
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.8e-66 255.0 200 64.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.8e-66 255.0 201 63.7
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.8e-66 255.0 201 63.7
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.1e-65 253.8 200 63.5
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.4e-65 253.4 198 62.6
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.8e-65 253.1 201 63.7
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 5.3e-65 251.5 200 63.5
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.3e-65 251.5 200 63.0
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 5.3e-65 251.5 199 63.3
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.3e-65 251.5 196 69.4
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.2e-64 250.4 194 62.9
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.6e-64 249.2 202 63.4
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 4.5e-64 248.4 199 60.8
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.7e-63 246.5 199 60.3
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 2.2e-63 246.1 200 62.5
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 3.8e-63 245.4 202 59.9
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 4.9e-63 245.0 197 60.4
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 8.4e-63 244.2 202 61.9
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 8.4e-63 244.2 198 61.6
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 8.4e-63 244.2 198 61.6
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.1e-62 243.8 199 60.3
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.1e-62 243.8 198 61.6
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 1.9e-62 243.0 202 59.9
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.5e-62 242.7 203 64.0
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 3.2e-62 242.3 199 59.3
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 3.2e-62 242.3 193 60.1
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 4.2e-62 241.9 202 58.9
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 4.2e-62 241.9 197 60.4
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 5.5e-62 241.5 199 59.3
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 9.3e-62 240.7 198 60.6
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 9.3e-62 240.7 194 57.7
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 1.2e-61 240.4 202 58.4
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.2e-61 240.4 202 59.4
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.2e-61 240.4 200 60.0
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.5e-61 238.8 202 58.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 3.5e-61 238.8 197 59.4
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 6.0e-61 238.0 150 79.3
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 7.9e-61 237.7 199 58.8
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 7.9e-61 237.7 199 58.8
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 7.9e-61 237.7 202 57.9
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.0e-60 237.3 197 59.4
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 2.3e-60 236.1 183 66.1
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.0e-60 235.7 193 62.2
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.9e-60 235.3 190 59.5
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 3.9e-60 235.3 192 61.5
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 8.7e-60 234.2 201 60.2
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 8.7e-60 234.2 191 59.2
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 1.1e-59 233.8 200 57.5
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 1.1e-59 233.8 200 57.5
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.5e-59 233.4 191 59.7
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.9e-59 233.0 189 67.2
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.5e-59 232.6 191 59.7
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 3.3e-59 232.3 250 50.4
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.7e-59 231.5 194 59.3
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 2.8e-58 229.2 202 55.4
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 8.2e-58 227.6 199 59.3
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 1.1e-57 227.3 200 58.5
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.1e-57 225.7 193 58.0
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 3.1e-57 225.7 190 62.1
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 5.3e-57 224.9 193 57.0
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 6.9e-57 224.6 190 58.4
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 3.4e-56 222.2 200 54.5
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 3.4e-56 222.2 193 57.0
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.7e-55 219.9 169 65.1
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 6.5e-55 218.0 154 72.1
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 2.5e-54 216.1 172 61.6
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 9.3e-54 214.2 267 46.4
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 5.1e-52 208.4 195 52.8
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 4.3e-51 205.3 187 59.4
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 7.4e-51 204.5 198 53.5
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 2.2e-50 203.0 193 51.8
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 4.1e-49 198.7 195 51.3
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.6e-48 196.1 145 68.3
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.9e-48 194.9 199 49.2
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.9e-48 194.9 199 49.2
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 7.7e-48 194.5 189 49.2
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 3.2e-46 189.1 195 47.2
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 3.6e-45 185.7 149 61.1
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 3.6e-45 185.7 148 61.5
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.4e-44 183.7 194 52.1
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.8e-42 176.0 143 62.9
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 2.4e-41 172.9 144 59.0
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.0e-40 169.9 134 61.9
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.7e-39 166.8 152 57.9
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 2.9e-39 166.0 154 53.9
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.9e-39 166.0 195 42.6
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 2.5e-38 162.9 116 68.1
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.7e-36 154.8 198 45.5
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-34 150.2 191 47.1
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 8.2e-34 147.9 200 39.5
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.6e-32 143.7 120 57.5
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.0e-32 143.3 115 63.5
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.2e-31 139.8 197 40.6
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 5.0e-31 138.7 175 48.6
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.6e-29 133.7 110 59.1
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.0e-28 129.4 118 54.2
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.6e-27 126.3 113 55.8
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 2.6e-27 126.3 195 32.8
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.1e-25 119.0 111 52.3
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.2e-23 113.2 86 62.8
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 7.2e-22 108.2 113 51.3
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 8.0e-21 104.8 82 65.9
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.0e-20 104.4 57 89.5
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.3e-18 97.4 49 95.9
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 1.3e-18 97.4 203 30.0
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 2.8e-18 96.3 197 35.5
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 2.4e-17 93.2 187 35.8
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.0e-15 87.8 66 65.2
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.0e-15 87.8 59 72.9
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 3.8e-15 85.9 204 27.5
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 9.2e-09 64.7 49 63.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 6.6e-07 58.5 181 26.5


User provided reference genes

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