Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 4.8e-186 654.4 350 100.0
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 5.0e-143 511.5 338 85.5
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 2.7e-120 436.0 302 79.5
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 3.0e-103 379.4 362 64.9
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.4e-99 365.5 365 61.1
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 6.4e-98 361.7 328 67.7
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.4e-97 360.5 317 67.5
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 3.2e-97 359.4 310 70.0
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 3.0e-95 352.8 356 60.1
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 3.3e-94 349.4 319 65.8
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 3.3e-94 349.4 321 65.4
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 4.3e-94 349.0 319 67.4
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 2.1e-93 346.7 322 65.2
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 3.6e-93 345.9 258 76.7
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 2.4e-92 343.2 358 58.7
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 3.1e-92 342.8 331 62.5
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 3.1e-92 342.8 331 63.4
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 4.0e-92 342.4 299 68.6
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 9.0e-92 341.3 331 63.7
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 5.8e-91 338.6 351 59.8
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 1.3e-90 337.4 301 66.4
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.1e-89 334.3 373 57.1
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.4e-89 333.2 341 59.5
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 6.0e-88 328.6 308 65.3
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 1.0e-87 327.8 337 60.2
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.3e-87 327.4 368 56.8
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.0e-87 326.2 340 57.6
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 1.1e-86 324.3 325 62.2
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.1e-86 324.3 328 61.6
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.9e-86 323.6 329 59.0
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 4.3e-86 322.4 321 62.6
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 4.3e-86 322.4 358 57.3
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 7.3e-86 321.6 320 62.2
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 9.6e-86 321.2 343 57.4
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 2.1e-85 320.1 372 57.0
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.1e-85 320.1 328 60.7
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.8e-85 319.7 328 61.0
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 6.2e-85 318.5 337 59.6
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 1.3e-82 310.8 357 56.3
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 1.1e-81 307.8 352 54.3
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 1.1e-81 307.8 345 54.5
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 2.4e-81 306.6 343 58.3
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 4.6e-80 302.4 345 54.8
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.9e-78 297.0 234 71.4
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 5.6e-78 295.4 365 52.3
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 2.8e-77 293.1 346 54.0
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 6.2e-77 292.0 330 58.5
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 4.5e-75 285.8 350 52.3
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 7.6e-75 285.0 347 56.2
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 1.7e-74 283.9 328 57.3
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 2.2e-74 283.5 311 55.9
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.9e-73 280.4 368 54.9
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.9e-73 280.4 316 54.7
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 4.2e-73 279.3 360 52.8
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 7.1e-73 278.5 313 57.5
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 2.7e-72 276.6 319 55.5
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 2.7e-72 276.6 196 72.4
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 1.0e-71 274.6 333 55.3
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 1.0e-71 274.6 333 55.3
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 1.0e-71 274.6 333 55.3
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 1.8e-71 273.9 185 76.2
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 2.3e-71 273.5 330 55.2
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.0e-71 273.1 362 53.9
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 3.9e-71 272.7 343 55.1
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 5.1e-71 272.3 284 59.2
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 1.9e-70 270.4 337 53.1
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 3.3e-70 269.6 318 56.0
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 7.4e-70 268.5 347 53.0
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 1.6e-69 267.3 184 74.5
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.1e-69 266.9 337 49.6
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 2.8e-69 266.5 369 49.1
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 4.8e-69 265.8 246 62.6
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 6.2e-69 265.4 370 50.8
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 8.2e-69 265.0 172 81.4
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 2.4e-68 263.5 353 52.1
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 7.6e-67 258.5 322 54.0
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 1.3e-66 257.7 196 70.9
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.3e-66 257.7 196 70.9
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 4.2e-65 252.7 361 51.0
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 6.0e-64 248.8 324 49.4
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 7.9e-64 248.4 161 78.9
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 1.8e-63 247.3 272 55.9
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 2.3e-63 246.9 191 69.6
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 6.7e-63 245.4 174 77.6
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.5e-62 244.2 220 63.6
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 3.3e-62 243.0 174 74.7
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 4.3e-62 242.7 184 71.2
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.6e-61 240.7 295 50.5
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 1.6e-61 240.7 304 56.2
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.1e-60 238.0 331 50.8
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.8e-60 237.3 388 42.0
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 4.1e-60 236.1 318 50.9
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 2.0e-59 233.8 181 70.7
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 1.7e-58 230.7 282 52.8
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 8.5e-58 228.4 162 76.5
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.4e-57 227.6 202 62.4
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 8.8e-55 218.4 247 57.5
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 1.1e-52 211.5 168 66.1
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.4e-51 206.5 235 58.7
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 3.8e-50 203.0 124 81.5
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 4.2e-49 199.5 162 64.8
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 9.4e-49 198.4 354 42.7
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 1.6e-48 197.6 168 62.5
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 3.6e-48 196.4 221 60.2
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.3e-47 193.7 150 70.7
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.3e-47 193.7 150 70.7
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 3.1e-44 183.3 104 87.5
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 6.1e-40 169.1 119 75.6
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 6.7e-39 165.6 124 72.6
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.2e-30 138.3 194 42.8
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 2.0e-30 137.5 170 58.2
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 9.7e-30 135.2 110 69.1
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 2.2e-29 134.0 71 93.0
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 1.6e-27 127.9 186 39.2
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 2.5e-25 120.6 106 64.2
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 7.2e-25 119.0 64 93.8
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 6.1e-24 115.9 171 49.7
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 4.4e-22 109.8 141 53.9
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 7.0e-20 102.4 73 74.0
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 3.3e-17 93.6 208 36.1
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.0e-15 88.6 107 52.3
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 8.3e-13 79.0 40 95.0
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 1.1e-12 78.6 128 42.2
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.2e-12 77.0 39 94.9
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 9.2e-12 75.5 76 60.5
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 1.0e-10 72.0 43 81.4
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.2e-06 58.5 109 38.5


User provided reference genes

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