Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 2.0e-305 1051.6 518 100.0
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.1e-284 982.6 518 93.2
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.5e-284 982.2 521 93.1
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 8.1e-283 976.5 527 90.9
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.1e-282 976.1 519 92.7
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 7.6e-281 969.9 520 91.5
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 4.9e-280 967.2 523 90.6
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 7.1e-279 963.4 520 90.4
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 9.3e-279 963.0 526 89.5
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.2e-278 962.6 519 90.9
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 2.1e-278 961.8 533 88.2
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 3.5e-278 961.1 524 89.7
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 6.0e-278 960.3 518 90.5
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 5.1e-277 957.2 526 89.5
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 8.7e-277 956.4 527 89.6
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.9e-276 955.3 525 89.1
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.5e-276 954.9 522 90.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 7.4e-276 953.4 525 89.9
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.3e-275 952.6 522 90.0
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 2.8e-275 951.4 531 88.3
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.7e-275 951.0 522 89.8
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.8e-275 950.7 515 90.1
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.8e-275 950.7 515 90.1
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 6.2e-275 950.3 520 90.6
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 8.1e-275 949.9 517 89.9
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 8.1e-275 949.9 522 89.8
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-274 949.5 521 89.4
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.4e-274 949.1 516 89.1
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 1.8e-274 948.7 516 89.9
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 4.0e-274 947.6 521 89.3
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 5.3e-274 947.2 516 90.1
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.2e-273 946.0 516 89.3
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-273 945.7 522 89.5
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-273 945.7 521 89.3
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 2.6e-273 944.9 565 83.5
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 3.4e-273 944.5 530 87.5
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 5.8e-273 943.7 517 89.7
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.7e-272 942.2 528 87.5
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 2.2e-272 941.8 516 89.1
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 2.2e-272 941.8 516 88.8
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.8e-272 941.0 518 88.8
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.8e-272 941.0 527 87.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.9e-272 940.6 522 87.5
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.1e-271 939.5 520 87.9
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 1.4e-271 939.1 526 87.5
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.4e-271 939.1 525 87.8
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 2.5e-271 938.3 528 87.3
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 4.2e-271 937.6 530 87.0
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.2e-271 937.6 518 89.0
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 5.5e-271 937.2 528 87.5
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.2e-270 936.0 507 89.3
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.6e-270 935.6 528 86.9
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.6e-270 935.6 519 87.5
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.6e-270 935.6 554 84.5
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.7e-270 934.9 521 87.5
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 2.7e-270 934.9 519 87.5
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 2.7e-270 934.9 519 87.5
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 4.6e-270 934.1 517 87.6
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 4.6e-270 934.1 519 87.5
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.3e-269 932.6 518 86.7
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.3e-269 932.6 528 86.6
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.3e-269 931.8 527 86.3
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 5.1e-269 930.6 530 85.8
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 3.3e-268 927.9 524 86.1
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.3e-268 927.9 546 83.7
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 4.3e-268 927.5 513 88.9
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 4.3e-268 927.5 529 86.6
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 5.7e-268 927.2 525 85.5
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 7.4e-268 926.8 519 86.9
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 9.6e-268 926.4 524 86.1
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 6.3e-267 923.7 527 85.8
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 8.2e-267 923.3 524 85.5
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 8.2e-267 923.3 524 85.5
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 8.2e-267 923.3 528 85.2
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-266 922.9 524 85.7
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-266 922.9 524 85.7
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.1e-266 922.9 514 87.9
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 3.1e-266 921.4 524 85.5
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.1e-266 921.0 527 85.4
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 9.0e-266 919.8 506 89.1
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.6e-265 918.3 523 86.4
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.9e-265 917.1 523 86.2
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 7.6e-265 916.8 521 86.0
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 2.9e-264 914.8 523 85.1
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 6.5e-264 913.7 522 83.9
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 8.4e-264 913.3 533 84.4
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.5e-263 911.8 523 85.7
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 7.2e-263 910.2 523 85.7
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 7.2e-263 910.2 527 84.1
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 2.1e-262 908.7 513 86.4
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 6.1e-262 907.1 498 87.8
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 6.1e-262 907.1 525 86.1
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 7.9e-262 906.7 519 85.7
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 3.9e-261 904.4 522 83.0
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 7.4e-260 900.2 523 84.5
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.1e-258 896.3 522 82.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.8e-258 895.6 523 83.7
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.8e-258 895.6 529 82.8
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 6.9e-258 893.6 512 84.0
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 5.9e-257 890.6 498 85.1
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.9e-257 890.6 515 82.1
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.0e-253 878.2 519 82.3
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.0e-253 878.2 519 82.3
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.0e-252 875.5 514 80.2
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 5.5e-247 857.4 519 81.3
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 4.7e-246 854.4 528 76.9
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 6.1e-246 854.0 518 80.5
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 4.5e-241 837.8 564 74.5
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.9e-239 832.4 528 75.8
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.7e-233 812.0 521 74.7
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.2e-232 808.9 473 86.3
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.2e-230 803.1 521 74.5
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.1e-230 802.4 503 75.5
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 4.1e-226 788.1 506 72.5
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.2e-224 782.3 521 70.2
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 5.0e-224 781.2 521 70.4
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.2e-222 776.5 521 69.9
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.4e-220 768.1 507 70.4
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 9.2e-218 760.4 524 75.0
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 8.6e-216 753.8 525 73.9
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 7.3e-215 750.7 518 69.9
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 4.4e-212 741.5 521 74.7
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 5.7e-212 741.1 412 86.9
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.5e-209 731.9 522 73.6
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.6e-204 715.7 491 68.4
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 9.2e-202 707.2 379 92.3
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.2e-188 663.7 537 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 5.8e-188 661.4 505 64.6
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.2e-185 653.7 419 80.4
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.3e-184 650.2 346 93.1
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 5.6e-183 644.8 344 92.7
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.1e-162 577.4 518 59.3
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 7.6e-156 554.7 355 78.6
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 7.9e-153 544.7 295 88.8
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.3e-152 543.9 287 89.2
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 4.3e-151 538.9 491 52.5
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.0e-144 517.7 275 94.2
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.0e-139 501.1 356 72.8
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.8e-133 480.3 510 49.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.0e-128 464.5 502 49.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 7.7e-124 448.4 285 80.0
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 6.8e-104 382.1 191 94.2
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 2.1e-81 307.4 409 40.3
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.8e-64 251.1 325 45.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 5.2e-64 249.6 362 43.1
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 7.1e-45 186.0 120 73.3
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 2.4e-40 171.0 93 86.0
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 1.0e-30 139.0 79 83.5
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 6.1e-28 129.8 93 66.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.2e-23 115.5 68 77.9
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.4e-21 108.6 76 69.7
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 7.0e-16 89.7 72 65.3
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.5e-13 81.3 125 43.2
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 2.6e-10 71.2 48 64.6
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 3.5e-07 60.8 35 77.1


User provided reference genes

Program Settings