Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 0.0e+00 1295.4 961 100.0
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 4.4e-266 921.8 927 80.8
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.3e-261 905.6 941 83.0
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 5.2e-259 898.3 919 81.0
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 1.5e-250 870.2 922 77.5
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 2.2e-249 866.3 924 76.3
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 1.2e-244 850.5 922 76.4
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 6.8e-243 844.7 923 75.5
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 1.3e-241 840.5 914 78.9
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 1.2e-239 833.9 963 75.2
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 2.1e-239 833.2 1078 53.4
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 1.7e-238 830.1 971 74.5
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 3.0e-238 829.3 977 73.5
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 3.9e-238 828.9 926 75.8
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 6.6e-238 828.2 972 73.7
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 2.5e-237 826.2 974 72.2
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 7.3e-237 824.7 950 75.1
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 9.6e-237 824.3 936 73.9
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 1.3e-236 823.9 965 72.6
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 1.6e-236 823.5 923 75.2
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.8e-235 820.1 923 74.1
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 2.6e-234 816.2 971 72.3
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 2.2e-233 813.1 971 73.4
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.9e-232 810.1 920 73.5
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.9e-232 810.1 920 73.5
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 2.7e-231 806.2 973 72.0
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 4.6e-231 805.4 918 73.0
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 8.1e-228 794.7 974 70.7
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 2.4e-227 793.1 920 74.3
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 2.4e-227 793.1 922 74.5
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 6.9e-227 791.6 919 72.3
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 3.4e-226 789.3 923 61.9
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 5.8e-226 788.5 924 73.1
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 9.9e-226 787.7 974 70.6
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.3e-225 787.3 918 73.0
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 1.7e-225 786.9 918 72.3
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 2.2e-225 786.6 924 72.4
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.2e-225 786.6 974 70.4
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 3.8e-225 785.8 948 73.0
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 8.4e-225 784.6 948 72.9
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 8.4e-225 784.6 942 70.0
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 4.2e-224 782.3 933 72.6
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 7.9e-223 778.1 918 72.2
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 3.0e-222 776.2 914 77.2
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 3.0e-222 776.2 913 72.3
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 5.1e-222 775.4 918 71.1
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 6.7e-222 775.0 917 74.0
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.5e-221 773.9 426 85.7
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 1.9e-221 773.5 918 73.6
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.9e-221 773.5 947 72.9
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 1.3e-220 770.8 926 71.7
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 1.3e-220 770.8 917 75.2
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 1.6e-220 770.4 991 71.5
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.8e-220 768.8 950 71.8
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 1.4e-219 767.3 916 70.7
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.8e-219 766.9 973 69.3
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 2.4e-219 766.5 917 71.9
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 4.0e-219 765.8 915 72.6
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 2.6e-218 763.1 939 70.5
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 1.7e-217 760.4 919 71.2
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.2e-217 760.0 913 75.9
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 3.2e-216 756.1 948 63.2
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 4.2e-216 755.7 428 82.9
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 4.6e-215 752.3 930 72.2
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 1.3e-214 750.7 919 72.9
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 4.3e-213 745.7 920 72.5
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 7.4e-213 745.0 895 72.0
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 8.2e-212 741.5 946 68.2
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 1.8e-211 740.3 920 69.9
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 4.1e-211 739.2 952 70.2
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 5.3e-211 738.8 914 72.4
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 3.4e-210 736.1 916 71.6
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 4.5e-210 735.7 920 69.7
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 4.5e-210 735.7 914 70.9
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 1.3e-209 734.2 858 73.8
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 2.2e-209 733.4 427 81.3
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 3.5e-207 726.1 974 68.6
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 2.3e-206 723.4 946 66.2
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 8.7e-206 721.5 927 67.1
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 2.8e-204 716.5 927 66.8
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.8e-204 716.5 771 68.5
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.8e-204 716.5 429 79.3
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 8.2e-204 714.9 927 66.7
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 1.1e-203 714.5 944 66.1
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 3.1e-203 713.0 927 66.7
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 5.3e-203 712.2 926 62.7
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 1.2e-202 711.1 922 67.7
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 7.7e-202 708.4 940 62.8
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 5.0e-201 705.7 923 66.5
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 6.1e-199 698.7 917 67.9
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 2.5e-197 693.3 928 71.1
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 4.3e-197 692.6 928 68.6
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 2.8e-196 689.9 928 71.1
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 1.4e-195 687.6 930 66.0
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 2.6e-194 683.3 1004 44.5
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 1.3e-193 681.0 428 76.2
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 7.0e-187 658.7 931 65.2
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 3.7e-164 583.2 445 62.9
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.0e-161 575.1 427 65.8
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 1.0e-161 575.1 913 55.1
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.1e-160 571.6 914 58.8
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 2.0e-149 534.3 841 65.4
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 4.1e-147 526.6 932 55.0
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 2.0e-146 524.2 439 61.3
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 1.2e-133 481.9 770 71.4
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 2.7e-122 444.1 425 51.1
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 8.1e-119 432.6 425 51.5
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 7.9e-114 416.0 309 68.6
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 3.8e-108 397.1 710 70.4
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 4.2e-91 340.5 194 78.9
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 2.5e-88 331.3 499 38.9
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 3.1e-70 271.2 440 41.8
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 4.1e-70 270.8 166 77.7
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 2.9e-68 264.6 270 54.1
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 2.1e-66 258.5 425 36.0
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 3.8e-60 237.7 140 78.6
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 1.4e-57 229.2 624 57.1
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 5.5e-51 207.2 264 50.8
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 1.2e-50 206.1 263 51.0
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 4.9e-47 194.1 99 88.9
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 1.0e-44 186.4 133 60.9
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 2.9e-44 184.9 262 46.2
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.5e-40 172.6 112 79.5
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 1.7e-36 159.1 176 48.9
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.2e-33 147.5 74 86.5
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 7.8e-29 133.7 287 41.8
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 3.7e-23 114.8 148 48.0
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 4.1e-22 111.3 224 43.3
CSS0029353 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.2e-17 94.4 196 54.1
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 9.9e-16 90.1 86 61.6
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 9.9e-16 90.1 71 63.4
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 9.9e-16 90.1 71 63.4
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 1.1e-11 76.6 44 75.0
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 1.6e-10 72.8 49 59.2
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.1e-10 72.4 43 81.4
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 3.1e-09 68.6 86 48.8
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 2.0e-08 65.9 60 55.0
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 2.6e-08 65.5 46 73.9
ATR0030G038 Amborella trichopoda HOM05D047453 ORTHO05D006199 2.2e-07 62.4 66 53.0
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.1e-06 60.1 32 87.5
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.4e-06 59.7 34 82.4
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.3e-06 57.0 33 81.8


User provided reference genes

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