Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 1.8e-73 279.3 154 100.0
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 2.0e-43 179.5 151 66.2
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 1.4e-41 173.3 152 65.1
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.2e-41 172.2 152 65.8
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 2.7e-40 169.1 152 63.8
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.3e-39 166.8 153 64.1
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 5.1e-39 164.9 151 58.3
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 1.6e-37 159.8 116 77.6
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 2.1e-37 159.5 152 61.2
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 2.8e-37 159.1 152 58.6
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 1.1e-36 157.1 152 59.9
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.4e-36 156.8 156 59.6
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.4e-36 156.8 152 60.5
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 3.1e-36 155.6 151 57.6
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 1.2e-35 153.7 154 55.2
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 7.6e-35 151.0 151 55.0
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 6.4e-34 147.9 151 53.0
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 8.4e-34 147.5 151 57.0
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.1e-33 147.1 154 56.5
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 3.2e-33 145.6 151 56.3
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 5.4e-33 144.8 149 57.0
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 5.4e-33 144.8 152 58.6
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 4.6e-32 141.7 151 51.7
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 7.8e-32 141.0 153 53.6
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 3.0e-31 139.0 146 55.5
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 5.1e-31 138.3 146 55.5
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 1.5e-30 136.7 150 52.7
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 2.5e-30 136.0 147 56.5
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 4.3e-30 135.2 125 57.6
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 5.6e-30 134.8 148 52.0
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 1.6e-29 133.3 139 54.0
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 2.8e-29 132.5 138 52.9
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 2.8e-29 132.5 148 49.3
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 6.2e-29 131.3 146 53.4
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 1.1e-28 130.6 146 52.7
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 1.1e-28 130.6 149 54.4
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 1.8e-28 129.8 157 47.8
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 3.1e-28 129.0 126 56.3
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 4.0e-28 128.6 149 53.7
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 4.0e-28 128.6 144 53.5
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 6.8e-28 127.9 150 52.0
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 6.8e-28 127.9 148 52.0
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 1.2e-27 127.1 139 49.6
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 1.5e-27 126.7 127 54.3
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.5e-27 126.7 125 59.2
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 9.9e-27 124.0 148 52.0
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 9.9e-27 124.0 148 52.0
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 9.9e-27 124.0 148 52.0
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 9.9e-27 124.0 148 54.1
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 9.9e-27 124.0 148 50.7
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 1.3e-26 123.6 145 52.4
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.3e-26 123.6 154 46.8
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 2.2e-26 122.9 149 49.7
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 2.9e-26 122.5 153 49.7
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 3.8e-26 122.1 121 58.7
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 4.9e-26 121.7 148 49.3
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 4.9e-26 121.7 147 53.1
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 4.9e-26 121.7 147 53.1
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 2.4e-25 119.4 131 51.9
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 3.2e-25 119.0 148 50.0
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 3.2e-25 119.0 125 51.2
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 3.2e-25 119.0 125 53.6
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 4.2e-25 118.6 125 51.2
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 5.4e-25 118.2 145 50.3
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 5.4e-25 118.2 147 49.0
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 7.1e-25 117.9 145 51.7
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 7.1e-25 117.9 148 47.3
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 2.1e-24 116.3 144 51.4
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 2.1e-24 116.3 148 48.6
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 2.7e-24 115.9 148 48.6
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 2.7e-24 115.9 145 49.7
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.5e-24 115.5 147 50.3
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 4.6e-24 115.2 151 47.0
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 1.7e-23 113.2 175 44.6
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 2.3e-23 112.8 145 47.6
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 3.0e-23 112.5 151 47.0
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 3.0e-23 112.5 153 45.1
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 1.5e-22 110.2 125 51.2
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 1.5e-22 110.2 152 47.4
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 1.9e-22 109.8 125 50.4
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 1.9e-22 109.8 148 50.0
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 1.9e-22 109.8 155 47.1
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.3e-22 109.0 145 49.0
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 5.6e-22 108.2 148 45.3
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 1.3e-21 107.1 153 45.1
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 1.3e-21 107.1 147 45.6
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 1.3e-21 107.1 147 45.6
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 1.6e-21 106.7 148 46.6
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 3.6e-21 105.5 149 47.0
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 6.2e-21 104.8 149 45.6
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 1.1e-20 104.0 123 49.6
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 3.1e-20 102.4 148 45.9
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 9.0e-20 100.9 102 54.9
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 1.1e-17 94.0 152 42.8
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 4.2e-17 92.0 152 42.1
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 2.1e-16 89.7 125 46.4
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 1.0e-15 87.4 72 68.1
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 1.6e-13 80.1 127 43.3
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 1.6e-13 80.1 144 38.9
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 3.6e-13 79.0 124 39.5
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 3.1e-12 75.9 147 38.1
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 4.5e-11 72.0 118 46.6
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 4.2e-09 65.5 62 53.2
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.7e-08 62.8 122 37.7
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 6.0e-08 61.6 116 37.1
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.0e-07 60.8 145 33.1
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 8.7e-07 57.8 65 50.8
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 7.4e-06 54.7 70 47.1
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 9.6e-06 54.3 63 49.2


User provided reference genes

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