Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 2.5e-47 191.8 101 100.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 3.9e-40 167.9 96 89.6
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.2e-35 152.1 96 80.2
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 2.2e-35 152.1 96 80.2
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.1e-34 149.8 96 80.2
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.4e-34 149.4 96 80.2
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.9e-34 149.1 96 79.2
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.9e-34 149.1 96 80.2
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 4.2e-34 147.9 96 79.2
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.5e-34 147.5 96 81.2
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 5.5e-34 147.5 96 79.2
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 5.5e-34 147.5 99 75.8
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 7.2e-34 147.1 98 76.5
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 9.3e-34 146.7 92 81.5
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 2.1e-33 145.6 99 73.7
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.7e-33 145.2 94 77.7
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.5e-33 144.8 96 78.1
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 4.6e-33 144.4 96 76.0
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 6.1e-33 144.1 91 84.6
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 6.1e-33 144.1 92 79.3
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 7.9e-33 143.7 98 74.5
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.3e-32 142.9 92 78.3
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.8e-32 142.5 92 78.3
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.8e-32 142.5 96 77.1
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.8e-32 142.5 96 79.2
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.8e-32 142.5 92 77.2
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 2.3e-32 142.1 96 76.0
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.3e-32 142.1 96 79.2
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 2.3e-32 142.1 91 81.3
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 3.0e-32 141.7 92 78.3
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 3.9e-32 141.4 96 76.0
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 3.9e-32 141.4 96 75.0
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 3.9e-32 141.4 96 74.0
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 3.9e-32 141.4 97 74.2
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 5.1e-32 141.0 92 77.2
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 5.1e-32 141.0 92 77.2
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 5.1e-32 141.0 92 77.2
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 5.1e-32 141.0 92 77.2
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 5.1e-32 141.0 92 77.2
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 5.1e-32 141.0 96 75.0
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 5.1e-32 141.0 92 77.2
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 5.1e-32 141.0 92 77.2
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 6.7e-32 140.6 92 77.2
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 8.7e-32 140.2 92 77.2
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.7e-32 140.2 92 75.0
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.7e-32 140.2 92 75.0
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 8.7e-32 140.2 92 75.0
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 8.7e-32 140.2 92 77.2
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 8.7e-32 140.2 94 75.5
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.1e-31 139.8 92 76.1
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.1e-31 139.8 98 72.4
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.5e-31 139.4 96 77.1
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.9e-31 139.0 96 74.0
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.9e-31 139.0 96 72.9
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 2.5e-31 138.7 96 74.0
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.5e-31 138.7 94 74.5
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 3.3e-31 138.3 92 75.0
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 3.3e-31 138.3 96 72.9
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 3.3e-31 138.3 96 74.0
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 3.3e-31 138.3 96 74.0
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 3.3e-31 138.3 96 74.0
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 4.3e-31 137.9 96 74.0
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.7e-31 137.5 94 75.5
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 5.7e-31 137.5 96 72.9
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 5.7e-31 137.5 96 69.8
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 7.4e-31 137.1 96 72.9
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 7.4e-31 137.1 96 74.0
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 7.4e-31 137.1 96 74.0
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 7.4e-31 137.1 96 72.9
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 9.7e-31 136.7 96 72.9
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 9.7e-31 136.7 96 71.9
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 9.7e-31 136.7 96 71.9
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 9.7e-31 136.7 96 71.9
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 9.7e-31 136.7 96 71.9
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 9.7e-31 136.7 96 71.9
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 1.3e-30 136.3 96 74.0
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 1.3e-30 136.3 93 76.3
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.3e-30 136.3 96 72.9
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.3e-30 136.3 96 71.9
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.6e-30 136.0 92 76.1
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.6e-30 136.0 93 75.3
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.2e-30 135.6 96 72.9
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 2.2e-30 135.6 96 70.8
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.2e-30 135.6 96 75.0
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 2.2e-30 135.6 96 75.0
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 2.2e-30 135.6 96 71.9
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 2.8e-30 135.2 96 72.9
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 2.8e-30 135.2 96 72.9
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 3.7e-30 134.8 96 71.9
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 3.7e-30 134.8 96 70.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 3.7e-30 134.8 92 73.9
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 3.7e-30 134.8 96 71.9
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 3.7e-30 134.8 93 75.3
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 4.8e-30 134.4 94 73.4
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.8e-30 134.4 96 72.9
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 6.3e-30 134.0 96 70.8
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 6.3e-30 134.0 96 70.8
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 6.3e-30 134.0 96 71.9
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 6.3e-30 134.0 96 71.9
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.2e-30 133.7 96 70.8
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.2e-30 133.7 96 71.9
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.2e-30 133.7 96 71.9
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 8.2e-30 133.7 96 71.9
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 8.2e-30 133.7 96 70.8
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.1e-29 133.3 94 72.3
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.1e-29 133.3 96 71.9
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.8e-29 132.5 96 68.8
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.8e-29 132.5 96 69.8
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.8e-29 132.5 95 72.6
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.8e-29 132.5 96 70.8
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 2.4e-29 132.1 96 70.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.1e-29 131.3 93 71.0
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 4.1e-29 131.3 97 71.1
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 5.3e-29 131.0 96 69.8
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 6.9e-29 130.6 96 68.8
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 6.9e-29 130.6 94 70.2
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 9.0e-29 130.2 96 69.8
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 9.0e-29 130.2 96 69.8
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 9.0e-29 130.2 87 73.6
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.5e-28 129.4 96 71.9
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.0e-28 129.0 96 71.9
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.0e-28 129.0 96 68.8
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.6e-28 128.6 96 69.8
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 5.9e-28 127.5 91 69.2
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 5.9e-28 127.5 89 71.9
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 5.9e-28 127.5 89 71.9
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.7e-28 127.1 99 64.6
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.7e-28 127.1 97 69.1
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 1.0e-27 126.7 96 70.8
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.0e-27 126.7 96 65.6
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 3.8e-27 124.8 84 76.2
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 5.0e-27 124.4 94 68.1
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.1e-26 123.2 132 53.0
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.9e-26 122.5 101 63.4
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 2.5e-26 122.1 94 67.0
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 2.5e-26 122.1 94 67.0
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 5.5e-26 120.9 82 75.6
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 5.5e-26 120.9 100 66.0
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.2e-26 120.6 93 68.8
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.1e-25 119.0 92 65.2
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.7e-25 118.6 88 65.9
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 4.6e-25 117.9 97 64.9
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.9e-25 117.1 105 61.9
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 7.9e-25 117.1 82 70.7
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.3e-24 115.5 87 64.4
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.3e-24 115.5 90 63.3
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.5e-23 112.8 93 63.4
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.5e-23 112.1 92 62.0
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.7e-22 109.4 96 66.7
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.2e-22 109.0 100 59.0
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.8e-22 108.6 98 54.1
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 2.4e-21 105.5 93 60.2
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 2.0e-20 102.4 165 41.2
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 2.0e-20 102.4 73 72.6
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.0e-19 100.1 61 82.0
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.9e-19 98.6 89 62.9
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 8.5e-19 97.1 62 75.8
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 1.9e-18 95.9 77 59.7
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.9e-18 95.9 98 53.1
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-17 92.8 68 69.1
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.6e-17 91.7 64 70.3
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 4.7e-17 91.3 69 66.7
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.7e-16 87.4 57 73.7
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 5.7e-15 84.3 66 66.7
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 7.4e-15 84.0 83 49.4
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 6.3e-14 80.9 65 69.2
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.4e-13 79.7 64 62.5
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.4e-13 79.7 64 64.1
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.8e-13 79.3 67 62.7
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.1e-10 70.1 86 52.3
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 4.0e-08 61.6 76 47.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.3e-07 58.5 71 50.7
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 7.5e-07 57.4 41 68.3
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.8e-06 55.5 45 60.0


User provided reference genes

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