Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 6.9e-110 400.6 194 100.0
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 2.4e-94 349.0 180 91.7
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 2.4e-94 349.0 180 92.8
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.2e-93 346.7 180 92.2
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.2e-93 346.7 180 92.2
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 4.2e-91 338.2 180 90.0
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 4.2e-91 338.2 180 90.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 2.7e-90 335.5 180 88.9
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.8e-89 332.8 180 88.3
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.1e-88 330.1 180 86.7
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.5e-88 329.7 180 86.7
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.5e-88 328.9 180 87.8
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 3.3e-88 328.6 180 87.2
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 4.3e-88 328.2 180 86.1
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 4.3e-88 328.2 180 87.2
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 5.7e-88 327.8 180 86.7
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 5.7e-88 327.8 180 86.7
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 7.4e-88 327.4 180 86.1
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 7.4e-88 327.4 180 86.7
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 7.4e-88 327.4 180 86.7
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.7e-88 327.0 180 86.1
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 9.7e-88 327.0 180 86.1
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.7e-87 326.2 180 85.6
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.7e-87 326.2 180 85.6
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.7e-87 326.2 180 86.7
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.7e-87 326.2 180 86.1
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.7e-87 326.2 180 85.6
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.2e-87 325.9 180 85.6
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 2.8e-87 325.5 180 86.7
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 2.8e-87 325.5 180 86.7
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 2.8e-87 325.5 180 86.7
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 2.8e-87 325.5 180 86.1
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.8e-87 325.5 180 85.6
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 2.8e-87 325.5 180 86.7
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.8e-87 325.5 180 87.2
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 2.8e-87 325.5 180 84.4
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 3.7e-87 325.1 179 86.0
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.7e-87 325.1 180 84.4
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 4.8e-87 324.7 180 85.0
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 6.3e-87 324.3 180 84.4
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 8.2e-87 323.9 180 86.7
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 8.2e-87 323.9 180 86.1
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 8.2e-87 323.9 180 86.7
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 8.2e-87 323.9 180 86.1
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 8.2e-87 323.9 180 86.7
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.1e-86 323.6 180 84.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.4e-86 323.2 180 85.6
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.8e-86 322.8 180 84.4
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.8e-86 322.8 180 84.4
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 1.8e-86 322.8 180 85.0
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 2.4e-86 322.4 180 86.1
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 2.4e-86 322.4 180 85.0
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.1e-86 322.0 180 86.7
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 3.1e-86 322.0 180 86.1
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 3.1e-86 322.0 180 83.9
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 3.1e-86 322.0 183 83.1
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 4.1e-86 321.6 180 83.3
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 4.1e-86 321.6 180 83.3
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 4.1e-86 321.6 180 86.1
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 5.3e-86 321.2 180 86.1
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 5.3e-86 321.2 180 86.1
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 9.1e-86 320.5 180 83.3
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-85 320.1 180 85.0
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-85 320.1 180 85.0
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-85 320.1 180 85.0
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.2e-85 320.1 180 83.3
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.2e-85 320.1 180 83.3
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.5e-85 319.7 180 83.3
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.5e-85 319.7 180 85.6
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.5e-85 319.7 180 84.4
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.5e-85 319.7 180 83.9
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.0e-85 319.3 180 83.9
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 2.0e-85 319.3 180 84.4
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 2.0e-85 319.3 180 84.4
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.4e-85 318.5 180 82.8
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 4.5e-85 318.2 180 82.8
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 7.7e-85 317.4 180 83.9
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 7.7e-85 317.4 180 82.2
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 7.7e-85 317.4 180 83.9
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.0e-84 317.0 180 85.0
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.0e-84 317.0 180 81.7
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.0e-84 317.0 180 81.7
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 2.2e-84 315.8 180 82.8
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.9e-84 315.5 183 80.3
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 2.9e-84 315.5 180 83.3
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 3.8e-84 315.1 182 84.6
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 3.8e-84 315.1 182 84.6
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 6.5e-84 314.3 180 82.2
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 6.5e-84 314.3 183 80.3
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 8.5e-84 313.9 180 83.9
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 8.5e-84 313.9 180 83.9
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 8.5e-84 313.9 180 81.1
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 8.5e-84 313.9 180 83.9
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.9e-83 312.8 180 80.6
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 2.5e-83 312.4 180 83.3
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 2.5e-83 312.4 180 83.3
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.5e-83 312.4 180 82.8
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 5.5e-83 311.2 180 81.1
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 7.2e-83 310.8 180 80.6
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.6e-82 309.7 180 82.2
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 2.7e-82 308.9 180 80.6
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 4.7e-82 308.1 181 82.9
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 7.9e-82 307.4 180 81.1
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.4e-81 306.6 181 82.9
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.3e-81 305.8 180 81.7
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 3.0e-81 305.4 180 81.1
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 3.0e-81 305.4 181 82.9
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 3.9e-81 305.1 180 78.9
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 8.8e-81 303.9 180 80.6
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 8.8e-81 303.9 181 82.9
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.6e-80 302.4 181 82.9
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 5.7e-80 301.2 181 81.2
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.8e-79 298.9 180 77.8
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 3.1e-78 295.4 181 81.2
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 7.0e-78 294.3 180 81.1
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 7.7e-77 290.8 166 82.5
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.3e-76 290.0 180 81.1
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 5.0e-76 288.1 162 83.3
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 6.5e-76 287.7 180 75.6
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 6.5e-76 287.7 180 77.2
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 6.5e-76 287.7 183 74.3
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 8.5e-76 287.3 180 76.1
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 2.5e-75 285.8 180 75.0
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 3.2e-75 285.4 180 75.0
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.0e-73 280.4 182 75.3
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 3.0e-73 278.9 180 74.4
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 5.2e-73 278.1 177 77.4
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 6.7e-73 277.7 182 74.2
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 9.7e-72 273.9 179 74.9
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.7e-71 273.1 188 71.8
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 9.1e-70 267.3 180 75.0
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.7e-68 263.1 180 68.3
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 3.8e-68 261.9 180 70.6
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 6.5e-68 261.2 180 66.1
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.1e-67 260.4 180 73.3
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.2e-67 258.8 180 68.9
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.2e-67 258.8 180 68.9
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 4.2e-67 258.5 180 66.7
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 3.6e-66 255.4 180 67.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.0e-64 249.6 181 65.2
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 6.3e-63 244.6 180 66.1
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.1e-62 243.8 180 65.0
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.7e-60 236.5 173 67.6
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 9.4e-59 230.7 165 72.7
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 4.4e-56 221.9 170 62.4
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.3e-55 220.3 180 56.7
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.8e-52 208.8 180 61.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 7.0e-46 188.0 183 51.9
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.6e-45 186.8 121 73.6
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.2e-42 177.2 107 78.5
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.0e-41 174.1 101 82.2
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 2.2e-39 166.4 127 66.1
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.6e-37 158.7 165 53.9
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 2.3e-36 156.4 115 69.6
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.0e-36 156.0 180 50.0
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.5e-35 153.7 77 94.8
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.7e-31 140.2 78 83.3
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 3.1e-25 119.4 89 68.5
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 5.8e-24 115.2 64 79.7
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.1e-06 57.8 42 64.3
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 5.4e-06 55.5 27 85.2


User provided reference genes

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