Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 3.9e-111 404.8 205 100.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.6e-40 170.2 104 81.7
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 6.1e-40 168.3 104 81.7
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.7e-37 160.2 100 82.0
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 2.8e-37 159.5 104 82.7
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 8.2e-37 157.9 108 77.8
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.1e-36 157.5 94 83.0
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 2.4e-36 156.4 102 80.4
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 3.1e-36 156.0 105 79.0
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.1e-36 155.6 104 81.7
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.6e-35 152.9 96 82.3
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 3.5e-35 152.5 95 81.1
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 7.7e-35 151.4 90 85.6
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.7e-35 151.4 104 80.8
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 1.3e-34 150.6 88 86.4
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.7e-34 150.2 104 78.8
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 2.2e-34 149.8 86 87.2
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 2.9e-34 149.4 89 85.4
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.8e-34 149.1 89 84.3
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.1e-33 147.5 103 72.8
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.9e-33 146.7 104 74.0
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.5e-33 146.4 89 83.1
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 3.2e-33 146.0 86 84.9
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 5.5e-33 145.2 89 82.0
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 5.5e-33 145.2 96 76.0
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 5.5e-33 145.2 90 81.1
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 7.2e-33 144.8 98 76.5
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 7.2e-33 144.8 105 68.6
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 9.4e-33 144.4 105 75.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.2e-32 144.1 104 71.2
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.6e-32 143.7 109 68.8
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 1.6e-32 143.7 88 83.0
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.6e-32 143.7 87 81.6
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.1e-32 143.3 110 71.8
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.1e-32 143.3 87 83.9
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.1e-32 143.3 85 82.4
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.7e-32 142.9 87 80.5
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 3.6e-32 142.5 104 69.2
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 3.6e-32 142.5 104 75.0
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.1e-32 141.7 89 80.9
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 6.1e-32 141.7 88 81.8
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 8.0e-32 141.4 98 76.5
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 8.0e-32 141.4 94 79.8
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.4e-31 140.6 89 80.9
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.4e-31 140.6 89 80.9
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 2.3e-31 139.8 93 75.3
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 2.3e-31 139.8 86 81.4
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.3e-31 139.8 100 72.0
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 3.0e-31 139.4 84 81.0
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 4.0e-31 139.0 82 84.1
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 5.2e-31 138.7 88 81.8
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.2e-31 138.7 88 81.8
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 5.2e-31 138.7 96 75.0
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 6.7e-31 138.3 90 75.6
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.7e-31 138.3 81 88.9
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.7e-31 138.3 81 88.9
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.7e-31 138.3 81 88.9
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 6.7e-31 138.3 88 79.5
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 8.8e-31 137.9 81 87.7
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 8.8e-31 137.9 87 78.2
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.2e-30 137.5 88 78.4
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.5e-30 137.1 87 79.3
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.5e-30 137.1 99 70.7
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.5e-30 137.1 82 84.1
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.5e-30 137.1 104 76.0
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.5e-30 137.1 98 75.5
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.5e-30 137.1 88 77.3
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 4.4e-30 135.6 85 84.7
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 7.5e-30 134.8 95 74.7
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 9.7e-30 134.4 102 66.7
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.2e-29 133.3 86 77.9
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 2.2e-29 133.3 95 74.7
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.2e-29 133.3 90 76.7
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.8e-29 132.9 86 77.9
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 4.8e-29 132.1 88 78.4
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 4.8e-29 132.1 82 80.5
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 4.8e-29 132.1 86 79.1
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 6.3e-29 131.7 86 79.1
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.4e-28 130.6 86 77.9
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.4e-28 130.6 86 77.9
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.8e-28 130.2 81 79.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 1.8e-28 130.2 86 77.9
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.4e-28 129.8 81 84.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 7.0e-28 128.3 97 70.1
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 7.0e-28 128.3 99 66.7
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 7.0e-28 128.3 99 67.7
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 9.1e-28 127.9 83 77.1
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.6e-27 127.1 81 76.5
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.0e-27 126.7 81 82.7
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.7e-27 126.3 88 76.1
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 2.7e-27 126.3 78 80.8
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 3.5e-27 125.9 81 75.3
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 3.5e-27 125.9 96 72.9
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 4.5e-27 125.6 99 65.7
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 4.5e-27 125.6 81 79.0
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 4.5e-27 125.6 81 81.5
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.9e-27 125.2 88 76.1
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 7.7e-27 124.8 81 75.3
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 7.7e-27 124.8 86 76.7
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 1.7e-26 123.6 81 75.3
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-26 123.6 81 75.3
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 2.9e-26 122.9 99 62.6
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 3.8e-26 122.5 88 70.5
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 3.8e-26 122.5 81 72.8
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 3.8e-26 122.5 81 72.8
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 3.8e-26 122.5 81 72.8
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 5.0e-26 122.1 81 74.1
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 5.0e-26 122.1 81 74.1
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 5.0e-26 122.1 81 74.1
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 6.5e-26 121.7 81 71.6
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 6.5e-26 121.7 81 71.6
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 6.5e-26 121.7 81 71.6
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 6.5e-26 121.7 81 71.6
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 6.5e-26 121.7 81 74.1
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 8.5e-26 121.3 97 62.9
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 1.1e-25 120.9 77 80.5
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.5e-25 120.6 81 75.3
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 3.2e-25 119.4 76 78.9
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.5e-25 118.6 81 74.1
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 7.2e-25 118.2 78 80.8
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 9.4e-25 117.9 73 83.6
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.2e-24 117.5 81 77.8
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.6e-24 117.1 81 70.4
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.6e-24 117.1 81 70.4
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.6e-24 117.1 81 70.4
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.6e-24 117.1 81 76.5
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 3.6e-24 115.9 80 76.2
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.8e-23 113.6 75 78.7
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.0e-22 110.2 83 72.3
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.0e-22 110.2 76 73.7
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 2.2e-21 106.7 80 72.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 7.0e-20 101.7 73 72.6
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.9e-19 98.6 65 76.9
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.0e-18 97.8 77 66.2
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 5.0e-18 95.5 77 66.2
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.1e-17 94.4 78 60.3
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.2e-17 91.7 64 73.4
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 9.5e-17 91.3 76 63.2
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.0e-15 87.8 77 63.6
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 3.0e-15 86.3 81 59.3
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 6.3e-13 78.6 56 69.6
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 6.3e-13 78.6 56 69.6
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 1.1e-12 77.8 80 50.0
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.7e-10 70.5 50 66.0
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.6e-08 63.9 40 77.5


User provided reference genes

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