Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 6.3e-97 357.8 238 100.0
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 4.0e-75 285.4 238 84.9
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 1.7e-73 280.0 238 84.5
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 2.8e-73 279.3 238 84.5
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 8.3e-73 277.7 238 84.0
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 2.4e-72 276.2 238 81.5
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.3e-70 270.4 239 83.3
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 5.0e-70 268.5 238 81.5
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 1.1e-69 267.3 234 80.8
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 1.1e-69 267.3 238 82.4
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 7.2e-69 264.6 239 80.3
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 1.2e-68 263.8 238 80.3
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 2.8e-68 262.7 254 76.0
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 6.1e-68 261.5 237 80.2
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 8.0e-68 261.2 240 79.6
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.4e-67 260.4 238 80.7
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.8e-67 260.0 240 79.2
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 2.3e-67 259.6 238 79.8
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 5.2e-67 258.5 249 67.5
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 6.8e-67 258.1 238 79.0
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 8.9e-67 257.7 240 79.2
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 2.6e-66 256.1 238 79.8
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 3.4e-66 255.8 238 79.8
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 4.4e-66 255.4 238 77.7
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 5.7e-66 255.0 238 79.8
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 5.7e-66 255.0 239 80.8
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-65 253.8 238 79.0
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 1.7e-65 253.4 241 81.3
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 1.7e-65 253.4 237 78.9
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 2.2e-65 253.1 239 78.2
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 2.8e-65 252.7 262 62.2
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 2.8e-65 252.7 238 78.2
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 3.7e-65 252.3 238 79.4
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.7e-65 252.3 238 79.4
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 4.9e-65 251.9 238 78.2
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 4.9e-65 251.9 238 77.7
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 1.1e-64 250.8 238 78.6
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.4e-64 250.4 240 79.2
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 2.4e-64 249.6 239 76.6
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.1e-64 249.2 238 79.4
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.6e-63 246.9 234 79.1
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.5e-63 245.7 241 78.8
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 4.5e-63 245.4 239 77.4
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.0e-62 244.2 235 78.3
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 2.9e-62 242.7 238 76.9
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 5.0e-62 241.9 231 79.2
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 4.3e-61 238.8 239 76.6
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.3e-61 238.0 258 55.0
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 1.2e-60 237.3 237 76.4
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.2e-60 237.3 199 89.4
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 3.6e-60 235.7 238 76.1
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 4.7e-60 235.3 242 75.6
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 8.0e-60 234.6 243 75.7
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.0e-59 234.2 213 83.1
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 1.4e-59 233.8 240 73.8
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.8e-59 233.4 200 88.5
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-59 233.0 199 88.9
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 6.8e-59 231.5 241 74.7
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 2.6e-58 229.6 159 73.0
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 4.4e-58 228.8 243 74.9
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 5.8e-58 228.4 238 76.5
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 5.8e-58 228.4 238 75.6
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 7.5e-58 228.0 238 76.5
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.3e-57 227.3 210 61.0
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.3e-57 227.3 210 61.0
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 2.2e-57 226.5 239 65.3
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 2.9e-57 226.1 200 83.5
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.9e-57 226.1 261 53.6
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.9e-57 226.1 238 75.6
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 3.7e-57 225.7 159 73.0
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 8.3e-57 224.6 200 72.0
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.4e-56 223.0 238 74.4
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 3.2e-56 222.6 191 86.9
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 5.4e-56 221.9 244 73.8
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 5.4e-56 221.9 241 75.1
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 9.2e-56 221.1 243 74.1
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 2.0e-55 219.9 241 71.8
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 1.0e-54 217.6 243 73.7
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 1.7e-54 216.9 198 84.3
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 3.0e-54 216.1 242 74.4
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 6.6e-54 214.9 197 83.2
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 8.6e-54 214.5 242 73.1
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 8.6e-54 214.5 238 70.6
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.9e-53 213.4 238 73.5
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 1.9e-53 213.4 242 72.3
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 2.5e-53 213.0 241 72.2
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 2.5e-53 213.0 238 72.7
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 4.3e-53 212.2 203 81.3
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 5.6e-53 211.8 208 78.4
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 7.3e-53 211.5 241 69.7
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.2e-52 210.7 205 80.5
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 1.6e-52 210.3 222 76.1
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 2.8e-52 209.5 184 88.0
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 6.2e-52 208.4 239 71.1
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 6.2e-52 208.4 242 69.0
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 6.8e-51 204.9 241 68.5
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 9.8e-50 201.1 198 77.8
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.7e-49 199.1 137 76.6
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.7e-49 199.1 137 76.6
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 6.4e-49 198.4 244 68.0
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 6.4e-49 198.4 244 68.0
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 6.4e-49 198.4 244 68.0
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 8.3e-49 198.0 241 67.6
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 8.3e-49 198.0 243 67.9
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-48 197.6 137 76.6
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.4e-48 196.4 137 75.2
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 4.1e-48 195.7 241 67.2
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 7.0e-48 194.9 124 77.4
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.0e-48 194.9 137 75.2
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.2e-47 194.1 242 67.8
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 2.1e-47 193.4 240 67.5
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-47 193.0 135 71.1
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-47 193.0 139 72.7
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.0e-46 191.0 238 53.4
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 2.3e-46 189.9 240 69.6
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 1.5e-45 187.2 184 81.5
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.3e-45 185.7 238 53.4
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 9.5e-45 184.5 235 68.1
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.2e-42 177.6 158 91.1
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 3.4e-42 176.0 200 70.5
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-41 174.1 157 90.4
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 1.9e-40 170.2 166 84.3
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 2.5e-37 159.8 134 61.2
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 8.9e-35 151.4 242 55.8
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 2.2e-33 146.7 156 81.4
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.8e-33 146.0 77 90.9
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 3.2e-32 142.9 106 67.9
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.1e-20 103.6 61 78.7
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 7.1e-16 88.6 116 83.6
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 6.7e-14 82.0 81 53.1
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 2.1e-12 77.0 179 41.3
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.3e-11 72.4 97 48.5


User provided reference genes

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