Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28586 Davidia involucrata HOM05D002696 ORTHO05D019089 3.5e-50 201.4 110 100.0
Dinv28583 Davidia involucrata HOM05D002696 ORTHO05D019089 2.2e-28 129.0 74 94.6
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 4.6e-26 121.3 73 89.0
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 1.4e-22 109.8 73 83.6
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 1.4e-22 109.8 73 83.6
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 8.9e-22 107.1 72 81.9
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 8.9e-22 107.1 72 81.9
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 8.9e-22 107.1 73 80.8
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 1.5e-21 106.3 74 78.4
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 3.4e-21 105.1 73 75.3
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 4.4e-21 104.8 73 80.8
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 5.8e-21 104.4 73 80.8
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 5.8e-21 104.4 73 78.1
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 5.8e-21 104.4 73 78.1
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 1.3e-20 103.2 73 78.1
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 1.3e-20 103.2 73 75.3
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 1.7e-20 102.8 73 75.3
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 2.2e-20 102.4 73 75.3
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 4.9e-20 101.3 73 76.7
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 8.4e-20 100.5 73 78.1
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.1e-19 100.1 73 79.5
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 1.4e-19 99.8 73 71.2
Actinidia20692 Actinidia chinensis HOM05D002696 ORTHO05D003940 1.4e-19 99.8 70 80.0
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 1.4e-19 99.8 74 74.3
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.9e-19 99.4 73 74.0
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 1.9e-19 99.4 73 75.3
FvH4_7g27350 Fragaria vesca HOM05D002696 ORTHO05D003940 2.4e-19 99.0 73 76.7
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 2.4e-19 99.0 78 71.8
FvH4_7g27690 Fragaria vesca HOM05D002696 ORTHO05D019089 2.4e-19 99.0 78 71.8
FAN06G0680 Fragaria x ananassa HOM05D002696 ORTHO05D019089 2.4e-19 99.0 78 71.8
FAN06G1338 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.4e-19 99.0 78 71.8
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 2.4e-19 99.0 73 72.6
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.4e-19 99.0 73 72.6
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 5.4e-19 97.8 76 73.7
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 5.4e-19 97.8 73 74.0
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 7.1e-19 97.4 73 72.6
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 9.2e-19 97.1 73 72.6
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 9.2e-19 97.1 73 75.3
Solyc03g093260.3 Solanum lycopersicum HOM05D002696 ORTHO05D003940 9.2e-19 97.1 73 71.2
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 9.2e-19 97.1 73 71.2
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.1e-18 95.9 73 75.3
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 2.1e-18 95.9 69 78.3
FvH4_7g27601 Fragaria vesca HOM05D002696 ORTHO05D019089 2.7e-18 95.5 73 74.0
FAN10G3229 Fragaria x ananassa HOM05D007222 ORTHO05D010132 2.7e-18 95.5 81 70.4
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 2.7e-18 95.5 73 72.6
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 4.6e-18 94.7 64 82.8
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 6.0e-18 94.4 71 77.5
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 7.8e-18 94.0 73 72.6
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 7.8e-18 94.0 74 67.6
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 1.0e-17 93.6 73 71.2
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.0e-17 93.6 90 63.3
FAN06G0913 Fragaria x ananassa HOM05D002696 ORTHO05D019089 1.3e-17 93.2 93 61.3
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.3e-17 92.4 73 74.0
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 2.3e-17 92.4 73 69.9
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 2.3e-17 92.4 73 71.2
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 2.3e-17 92.4 73 72.6
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 2.3e-17 92.4 73 71.2
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 3.0e-17 92.0 73 69.9
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 3.0e-17 92.0 73 69.9
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 5.1e-17 91.3 73 67.1
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 6.6e-17 90.9 73 69.9
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 6.6e-17 90.9 73 69.9
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 6.6e-17 90.9 73 69.9
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 8.7e-17 90.5 73 65.8
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 8.7e-17 90.5 73 65.8
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 8.7e-17 90.5 73 69.9
FAN06G1128 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.5e-16 89.7 73 69.9
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 1.5e-16 89.7 68 73.5
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 1.9e-16 89.4 73 68.5
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 1.9e-16 89.4 73 64.4
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 5.6e-16 87.8 73 67.1
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 7.3e-16 87.4 73 65.8
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 7.3e-16 87.4 73 65.8
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 2.8e-15 85.5 73 64.4
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 6.2e-15 84.3 73 63.0
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 6.2e-15 84.3 73 65.8
FAN06G4793 Fragaria x ananassa HOM05D002696 ORTHO05D019089 8.1e-15 84.0 63 74.6
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 1.1e-14 83.6 73 63.0
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 1.1e-14 83.6 73 64.4
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.4e-14 83.2 63 73.0
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 1.4e-14 83.2 63 71.4
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.4e-14 83.2 73 61.6
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 2.4e-14 82.4 73 61.6
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 3.1e-14 82.0 70 67.1
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 4.0e-14 81.6 62 72.6
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 6.9e-14 80.9 73 60.3
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 6.9e-14 80.9 74 59.5
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 9.0e-14 80.5 68 61.8
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 9.0e-14 80.5 55 81.8
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 2.0e-13 79.3 73 63.0
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 2.0e-13 79.3 73 60.3
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 2.6e-13 79.0 73 58.9
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 2.6e-13 79.0 73 60.3
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 3.4e-13 78.6 56 78.6
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.4e-13 78.2 73 65.8
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 4.4e-13 78.2 62 69.4
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 9.9e-13 77.0 69 60.9
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 9.9e-13 77.0 70 64.3
FAN10G2221 Fragaria x ananassa HOM05D005822 ORTHO05D007267 1.7e-12 76.3 68 69.1
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.9e-12 75.5 73 64.4
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 2.9e-12 75.5 54 77.8
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 3.8e-12 75.1 68 60.3
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 6.4e-12 74.3 68 60.3
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 6.4e-12 74.3 68 60.3
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 6.4e-12 74.3 68 60.3
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 6.4e-12 74.3 68 60.3
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 6.4e-12 74.3 63 68.3
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 6.4e-12 74.3 62 64.5
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 6.4e-12 74.3 73 63.0
FAN06G0900 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.4e-11 73.2 53 75.5
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 3.2e-11 72.0 62 67.7
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 4.2e-11 71.6 59 64.4
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 5.4e-11 71.2 54 72.2
Lalb_Chr01g0008021 Lupinus albus HOM05D002696 ORTHO05D003940 5.4e-11 71.2 53 69.8
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 1.2e-10 70.1 52 73.1
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 1.6e-10 69.7 57 68.4
FvH4_7g28372 Fragaria vesca HOM05D002696 ORTHO05D023279 2.7e-10 68.9 90 53.3
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 4.6e-10 68.2 73 54.8
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 1.3e-09 66.6 52 71.2
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 2.3e-09 65.9 62 56.5
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.3e-09 65.9 56 64.3
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.0e-09 65.5 58 63.8
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 3.9e-09 65.1 54 68.5
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 1.5e-08 63.2 60 58.3
FAN06G3863 Fragaria x ananassa HOM05D002696 ORTHO05D011600 1.5e-08 63.2 48 70.8
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 1.5e-08 63.2 46 71.7
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.5e-08 62.4 51 60.8
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 3.3e-08 62.0 47 72.3
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 1.3e-07 60.1 54 59.3
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.1e-06 57.0 53 58.5
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 3.1e-06 55.5 54 59.3


User provided reference genes

Program Settings