Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 2.1e-276 955.3 571 100.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 2.0e-72 277.7 604 42.4
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 3.7e-63 246.9 593 41.0
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.7e-60 238.0 584 39.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.4e-57 228.4 637 36.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 3.1e-57 227.3 651 37.0
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 3.2e-54 217.2 616 38.1
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 9.3e-54 215.7 649 39.1
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 2.3e-52 211.1 591 35.4
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 7.3e-51 206.1 605 36.9
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.0e-48 198.0 670 34.6
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 3.4e-48 197.2 634 37.7
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.9e-47 194.1 618 35.1
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 8.4e-47 192.6 636 32.9
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.6e-45 188.3 607 35.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.1e-45 188.0 579 40.2
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 3.9e-44 183.7 645 38.4
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.5e-43 181.8 585 39.0
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.5e-43 181.8 681 33.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.2e-40 172.2 417 36.0
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.0e-40 171.4 586 34.1
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 2.6e-40 171.0 605 34.7
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.6e-40 171.0 447 35.6
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 3.8e-39 167.2 341 39.6
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.9e-38 164.9 696 30.3
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.9e-38 164.9 449 33.9
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 5.5e-38 163.3 751 30.0
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 7.1e-38 162.9 606 32.0
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.5e-37 160.6 462 33.3
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 7.9e-37 159.5 609 32.7
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.8e-36 158.3 752 30.2
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.9e-35 154.8 547 32.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.6e-35 152.5 433 34.4
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 6.9e-33 146.4 668 32.9
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.5e-32 145.2 750 28.0
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.5e-32 145.2 576 34.5
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 3.4e-32 144.1 590 38.0
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 3.8e-31 140.6 667 28.6
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 4.9e-31 140.2 687 30.3
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 6.5e-31 139.8 613 33.1
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.1e-30 139.0 388 35.6
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.4e-30 138.7 621 29.8
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 4.6e-29 133.7 712 31.0
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.6e-29 133.7 561 34.0
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.9e-29 132.9 555 30.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 7.9e-29 132.9 652 31.7
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.3e-28 131.3 664 32.1
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 6.7e-28 129.8 686 29.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.7e-28 129.4 570 30.2
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.1e-27 129.0 581 32.5
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 7.4e-27 126.3 591 30.6
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.1e-25 120.9 397 31.0
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 3.1e-25 120.9 469 30.5
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.2e-24 119.0 555 29.9
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.5e-24 118.6 371 34.0
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.4e-24 117.5 676 29.0
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 5.9e-24 116.7 665 29.9
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 7.6e-24 116.3 384 29.4
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.0e-23 115.9 410 31.5
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.2e-23 114.8 516 29.5
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.9e-23 114.4 502 28.7
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 5.0e-23 113.6 576 27.6
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 5.0e-23 113.6 593 31.7
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.0e-23 113.6 224 41.5
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 6.5e-23 113.2 666 30.3
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 6.5e-23 113.2 666 30.3
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.1e-22 112.5 515 30.7
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.4e-22 112.1 821 25.2
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.4e-22 112.1 707 28.6
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.4e-22 112.1 390 33.6
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 5.5e-22 110.2 396 31.1
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 6.1e-21 106.7 673 29.6
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.8e-20 105.1 571 28.2
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.8e-20 105.1 303 35.3
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.0e-20 104.4 597 28.1
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 5.1e-20 103.6 668 28.9
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 6.7e-20 103.2 699 26.2
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.1e-19 102.4 393 30.3
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.5e-19 102.1 459 30.5
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.3e-19 100.5 653 27.0
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 7.4e-19 99.8 574 31.7
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 9.7e-19 99.4 604 28.8
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.3e-18 99.0 685 28.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 6.3e-18 96.7 621 27.5
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 6.3e-18 96.7 220 38.2
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 2.4e-17 94.7 292 36.6
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 4.1e-17 94.0 599 27.5
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.2e-16 92.4 332 34.9
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 4.5e-16 90.5 591 27.4
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 7.7e-16 89.7 631 29.3
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 7.7e-16 89.7 610 28.2
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 7.7e-16 89.7 593 28.2
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.8e-15 87.4 609 27.1
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 8.5e-15 86.3 639 26.0
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.4e-14 85.5 582 26.6
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 5.5e-14 83.6 150 42.7
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 7.2e-14 83.2 235 33.6
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.2e-13 82.4 238 34.9
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 6.1e-13 80.1 595 26.9
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 6.1e-13 80.1 602 27.9
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 6.1e-13 80.1 280 34.6
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 7.9e-13 79.7 628 26.1
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.0e-12 79.3 357 29.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.3e-12 78.2 616 26.8
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.3e-12 78.2 623 25.5
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 3.9e-12 77.4 525 24.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 6.7e-12 76.6 597 28.0
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.1e-11 75.9 656 25.3
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 4.4e-11 73.9 750 25.9
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 4.4e-11 73.9 196 37.2
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.4e-11 73.9 658 25.5
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 7.4e-11 73.2 677 25.8
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 6.3e-10 70.1 376 31.6
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 8.2e-10 69.7 637 24.0
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 1.4e-09 68.9 267 28.8
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 2.4e-09 68.2 235 31.5
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 2.4e-09 68.2 515 25.0
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 2.4e-09 68.2 124 37.1
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 6.9e-09 66.6 682 23.8
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 9.1e-09 66.2 726 25.8
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.5e-08 65.5 252 34.9
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.5e-08 65.5 273 31.1
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.0e-08 65.1 624 25.5
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 2.0e-08 65.1 207 34.8
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.0e-08 65.1 936 22.4
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 2.0e-08 65.1 550 25.6
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.0e-08 65.1 281 31.7
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 3.4e-08 64.3 207 34.8
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 4.5e-08 63.9 771 24.5
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 4.5e-08 63.9 720 25.0
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 5.9e-08 63.5 561 26.9
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 5.9e-08 63.5 175 36.0
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 5.9e-08 63.5 232 34.1
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 1.3e-07 62.4 178 37.1
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 1.3e-07 62.4 146 36.3
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.9e-07 61.2 629 27.2
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.9e-07 61.2 542 26.6
ECA238G1893 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.8e-07 60.8 591 23.4
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.1e-06 59.3 170 36.5
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.4e-06 58.9 771 24.8
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.4e-06 58.9 566 25.4
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 2.5e-06 58.2 584 27.6
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 7.2e-06 56.6 607 26.9
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.4e-06 56.2 136 36.8


User provided reference genes

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