Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 4.2e-177 624.8 365 100.0
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 1.2e-118 430.6 333 81.4
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 4.2e-108 395.6 318 79.2
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 5.6e-105 385.2 313 81.2
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 3.7e-104 382.5 315 75.2
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.8e-104 382.1 317 75.7
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 2.0e-94 350.1 325 70.2
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.9e-90 335.9 336 69.6
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 1.1e-89 334.3 351 68.7
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 3.3e-89 332.8 312 70.8
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 7.4e-89 331.6 349 65.6
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 4.8e-88 328.9 314 70.7
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.1e-87 327.8 363 61.7
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.4e-87 327.4 333 69.1
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.4e-87 327.4 328 61.9
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 4.1e-87 325.9 300 76.0
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 1.2e-86 324.3 320 70.6
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 2.6e-86 323.2 345 66.7
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.4e-86 322.8 341 68.3
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 4.5e-86 322.4 344 64.5
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 7.7e-86 321.6 344 66.0
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 7.7e-86 321.6 347 63.7
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 1.0e-85 321.2 357 61.9
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 1.7e-85 320.5 324 65.7
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 2.2e-85 320.1 348 63.5
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 2.2e-85 320.1 336 67.3
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 5.0e-85 318.9 359 66.3
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.1e-84 317.8 311 60.8
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.4e-84 317.4 314 62.1
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 1.4e-84 317.4 334 70.4
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 1.4e-84 317.4 323 72.4
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 4.2e-84 315.8 346 66.5
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 7.2e-84 315.1 345 66.4
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 7.2e-84 315.1 357 65.0
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 4.6e-83 312.4 339 66.7
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.4e-82 310.8 344 65.7
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 1.1e-81 307.8 430 53.7
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 1.5e-81 307.4 352 65.6
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.5e-81 307.4 320 66.9
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 2.0e-81 307.0 327 65.7
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 2.0e-81 307.0 343 63.8
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 2.5e-81 306.6 337 67.1
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 2.5e-81 306.6 329 67.2
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 4.8e-80 302.4 334 68.0
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 8.2e-80 301.6 337 65.0
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 1.1e-79 301.2 316 60.1
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.4e-79 300.8 337 63.2
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 2.4e-79 300.1 349 60.2
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 3.1e-79 299.7 168 88.1
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 3.1e-79 299.7 347 61.4
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 6.9e-79 298.5 402 56.0
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.0e-78 297.0 328 68.9
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 2.0e-78 297.0 327 69.1
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 2.6e-78 296.6 334 65.6
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 3.4e-78 296.2 343 65.6
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 4.5e-78 295.8 314 54.1
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 4.5e-78 295.8 311 54.3
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 1.3e-77 294.3 334 65.6
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.7e-77 293.9 348 66.1
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 2.2e-77 293.5 349 64.2
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 2.2e-77 293.5 320 67.8
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-76 291.2 333 67.6
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 1.1e-76 291.2 384 53.6
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 2.5e-76 290.0 348 58.3
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 2.5e-76 290.0 341 65.4
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 5.5e-76 288.9 327 61.8
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 7.2e-76 288.5 168 82.7
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 1.6e-75 287.3 352 63.1
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 2.1e-75 287.0 352 59.4
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 2.7e-75 286.6 314 67.5
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 7.9e-75 285.0 346 63.0
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 8.8e-74 281.6 331 63.7
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 2.6e-73 280.0 316 64.2
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 2.6e-73 280.0 357 59.7
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 1.3e-72 277.7 349 59.3
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.2e-72 275.0 323 63.8
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 4.1e-71 272.7 313 61.3
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 5.3e-71 272.3 403 54.8
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 5.3e-71 272.3 351 59.3
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 5.3e-71 272.3 312 62.2
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 7.0e-71 271.9 312 66.0
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 9.1e-71 271.6 319 68.7
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.6e-70 270.8 356 57.9
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 3.5e-70 269.6 329 58.7
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 3.5e-70 269.6 311 53.4
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.5e-70 269.2 324 63.3
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 5.9e-70 268.9 314 60.5
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 1.7e-69 267.3 426 47.7
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 1.7e-69 267.3 317 65.3
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 2.9e-69 266.5 311 59.2
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.8e-69 266.2 317 63.4
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 9.4e-68 261.5 324 63.9
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 9.4e-68 261.5 324 62.0
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 1.2e-67 261.2 311 64.0
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 2.7e-67 260.0 324 50.9
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 4.0e-66 256.1 377 57.3
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 4.0e-66 256.1 315 61.3
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.2e-66 255.8 297 61.6
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 8.8e-66 255.0 335 60.6
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 1.3e-64 251.1 311 56.6
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 1.7e-64 250.8 313 59.1
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 8.2e-64 248.4 150 81.3
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.4e-63 247.7 349 56.4
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 1.8e-63 247.3 152 81.6
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 7.0e-63 245.4 301 58.8
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 5.9e-62 242.3 312 60.6
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 8.5e-61 238.4 318 60.4
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 3.6e-59 233.0 131 83.2
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.5e-57 227.6 380 48.9
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 7.5e-57 225.3 167 69.5
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.8e-55 220.7 132 77.3
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.8e-55 220.7 132 77.3
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 2.9e-53 213.4 280 62.5
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 5.0e-53 212.6 165 67.9
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.9e-52 210.7 337 47.5
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 9.4e-52 208.4 359 43.7
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 2.1e-51 207.2 292 62.7
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 1.4e-50 204.5 296 62.5
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 4.0e-50 203.0 134 73.1
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 9.8e-49 198.4 371 43.9
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.2e-40 170.6 265 61.5
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.2e-35 152.5 244 61.1
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.6e-30 137.9 242 61.2
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 2.0e-30 137.5 199 44.7
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 6.6e-29 132.5 120 53.3
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 7.3e-28 129.0 297 42.8
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 8.1e-27 125.6 239 46.0
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 8.9e-26 122.1 77 80.5
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.0e-25 120.9 58 87.9
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 5.8e-25 119.4 134 46.3
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.3e-21 107.5 53 88.7
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 6.6e-21 105.9 71 70.4
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 8.6e-21 105.5 52 84.6
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 7.3e-20 102.4 56 80.4
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.3e-16 91.7 82 54.9
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 1.2e-14 85.1 63 60.3
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.5e-14 83.6 63 58.7
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 8.6e-13 79.0 234 47.9
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.4e-09 67.0 119 48.7
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 8.4e-08 62.4 48 62.5


User provided reference genes

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