Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28123 Davidia involucrata HOM05D003928 ORTHO05D007133 1.5e-101 372.9 192 100.0
Dinv15697 Davidia involucrata HOM05D003928 ORTHO05D007133 9.6e-80 300.4 211 77.3
MELO3C002096.2 Cucumis melo HOM05D003928 ORTHO05D007133 1.4e-67 260.0 219 63.0
ClCG00G001070 Citrullus lanatus HOM05D003928 ORTHO05D007133 1.9e-67 259.6 219 62.6
ClCG04G011000 Citrullus lanatus HOM05D003928 ORTHO05D007133 1.9e-67 259.6 219 62.6
CsaV3_1G006710 Cucumis sativus L. HOM05D003928 ORTHO05D007133 5.5e-67 258.1 219 62.6
CSS0042498 Camellia sinensis var. sinensis HOM05D003928 ORTHO05D007133 1.2e-66 256.9 219 64.8
Actinidia02661 Actinidia chinensis HOM05D003928 ORTHO05D007133 3.9e-65 251.9 182 71.4
Nn6g34767 Nelumbo nucifera HOM05D003928 ORTHO05D007133 5.1e-65 251.5 211 63.0
arahy.Tifrunner.gnm1.ann1.2TSU5I Arachis hypogaea HOM05D003928 ORTHO05D007133 1.1e-64 250.4 219 61.2
Sed0028203 Sechium edule HOM05D003928 ORTHO05D007133 1.9e-64 249.6 219 59.8
Glyma.08G044600 Glycine max HOM05D003928 ORTHO05D007133 4.3e-64 248.4 211 62.6
Glyma.05G237400 Glycine max HOM05D003928 ORTHO05D007133 7.4e-64 247.7 215 61.9
Cpa.g.sc3.486 Carica papaya HOM05D003928 ORTHO05D007133 9.7e-64 247.3 219 62.6
Eucgr.K02232 Eucalyptus grandis HOM05D003928 ORTHO05D007133 9.7e-64 247.3 219 61.2
Cfa019749 Carpinus fangiana HOM05D003928 ORTHO05D007133 6.3e-63 244.6 213 62.4
QL10p025782 Quercus lobata HOM05D003928 ORTHO05D007133 8.2e-63 244.2 217 63.1
VMungo0251G0737 Vigna mungo HOM05D003928 ORTHO05D007133 8.2e-63 244.2 219 59.4
THA.LOC104820383 Tarenaya hassleriana HOM05D003928 ORTHO05D007133 2.4e-62 242.7 210 61.9
Haze_18702 Corylus avellana HOM05D003928 ORTHO05D007133 5.3e-62 241.5 213 61.5
RcHm_v2.0_Chr7g0185741 Rosa chinensis HOM05D003928 ORTHO05D007133 5.3e-62 241.5 208 63.9
CANSAT80G1256 Cannabis sativa HOM05D003928 ORTHO05D007133 6.9e-62 241.1 219 59.8
Thhalv10020046m.g Eutrema salsugineum HOM05D003928 ORTHO05D007133 2.6e-61 239.2 216 59.7
Phvul.002G317900 Phaseolus vulgaris HOM05D003928 ORTHO05D007133 2.6e-61 239.2 219 58.4
MD14G1228200 Malus domestica HOM05D003928 ORTHO05D007133 3.4e-61 238.8 219 59.8
Sp3g16410 Schrenkiella parvula HOM05D003928 ORTHO05D007133 3.4e-61 238.8 218 59.2
CDE04G1035 Ceratophyllum demersum HOM05D003928 ORTHO05D007133 4.5e-61 238.4 219 58.9
Ca_25458_v3 Cicer arietinum L. HOM05D003928 ORTHO05D007133 4.5e-61 238.4 216 59.3
Psat7g010840 Pisum sativum HOM05D003928 ORTHO05D007133 4.5e-61 238.4 218 58.7
C05p35390 Brassica napus HOM05D003928 ORTHO05D007133 7.6e-61 237.7 210 59.5
TPR.G32710 Trifolium pratense HOM05D003928 ORTHO05D007133 7.6e-61 237.7 213 60.6
Sp1g35680 Schrenkiella parvula HOM05D003928 ORTHO05D007133 1.0e-60 237.3 210 60.5
Medtr8g104380 Medicago truncatula HOM05D003928 ORTHO05D007133 2.2e-60 236.1 218 58.3
Carub.0001s3791 Capsella rubella HOM05D003928 ORTHO05D007133 2.9e-60 235.7 207 61.4
Lj6g0007940 Lotus japonicus HOM05D003928 ORTHO05D007133 2.9e-60 235.7 219 58.9
Prupe.5G223200 Prunus persica HOM05D003928 ORTHO05D007133 5.0e-60 235.0 219 58.4
BcaC05g27555 Brassica carinata HOM05D003928 ORTHO05D007133 6.5e-60 234.6 205 60.5
CARHR093630 Cardamine hirsuta HOM05D003928 ORTHO05D007133 6.5e-60 234.6 218 58.7
CARHR038730 Cardamine hirsuta HOM05D003928 ORTHO05D007133 8.5e-60 234.2 210 59.5
MD06G1218100 Malus domestica HOM05D003928 ORTHO05D007133 1.4e-59 233.4 219 58.9
A05p20900 Brassica napus HOM05D003928 ORTHO05D007133 1.9e-59 233.0 205 60.0
C05p47670 Brassica napus HOM05D003928 ORTHO05D007133 3.2e-59 232.3 218 59.2
BolC5t33475H Brassica oleracea HOM05D003928 ORTHO05D007133 3.2e-59 232.3 218 59.2
PGR044G0175 Punica granatum HOM05D003928 ORTHO05D007133 3.2e-59 232.3 219 58.0
BraA05t20995Z Brassica rapa HOM05D003928 ORTHO05D007133 4.2e-59 231.9 205 59.5
Aa31LG10G4780 Aethionema arabicum HOM05D003928 ORTHO05D007133 5.5e-59 231.5 210 59.0
Aa31LG8G5140 Aethionema arabicum HOM05D003928 ORTHO05D007133 5.5e-59 231.5 210 60.0
Duzib205G0965 Durio zibethinus HOM05D003928 ORTHO05D007133 7.2e-59 231.1 219 58.9
Manes.05G124730 Manihot esculenta HOM05D003928 ORTHO05D007133 7.2e-59 231.1 219 58.4
Potri.012G055000 Populus trichocarpa HOM05D003928 ORTHO05D007133 1.6e-58 229.9 219 57.1
vmacro17703 Vaccinium macrocarpon HOM05D003928 ORTHO05D007133 2.1e-58 229.6 219 58.0
A05p31370 Brassica napus HOM05D003928 ORTHO05D007133 2.7e-58 229.2 218 58.7
BraA05t21975Z Brassica rapa HOM05D003928 ORTHO05D007133 2.7e-58 229.2 218 58.7
FvH4_5g11850 Fragaria vesca HOM05D003928 ORTHO05D007133 2.7e-58 229.2 219 58.0
FAN13G0494 Fragaria x ananassa HOM05D003928 ORTHO05D007133 2.7e-58 229.2 219 58.0
FAN18G2650 Fragaria x ananassa HOM05D003928 ORTHO05D007133 2.7e-58 229.2 219 58.0
PGSC0003DMG400005647 Solanum tuberosum HOM05D003928 ORTHO05D007133 7.9e-58 227.6 220 59.1
Sopen03g038150 Solanum pennellii HOM05D003928 ORTHO05D007133 1.0e-57 227.3 220 59.1
TWI81G1044 Tripterygium wilfordii HOM05D003928 ORTHO05D007133 1.0e-57 227.3 220 57.3
Duzib084G0756 Durio zibethinus HOM05D003928 ORTHO05D007133 1.4e-57 226.9 211 59.2
FAN08G0705 Fragaria x ananassa HOM05D003928 ORTHO05D007133 1.4e-57 226.9 219 57.5
Lsat_1_v5_gn_8_145181 Lactuca sativa HOM05D003928 ORTHO05D007133 1.4e-57 226.9 218 57.3
Lalb_Chr24g0397881 Lupinus albus HOM05D003928 ORTHO05D007133 1.4e-57 226.9 210 57.6
AT1G48760 Arabidopsis thaliana HOM05D003928 ORTHO05D007133 1.8e-57 226.5 210 58.1
Duzib068G1360 Durio zibethinus HOM05D003928 ORTHO05D007133 1.8e-57 226.5 219 57.1
Nitab4.5_0008233g0010 Nicotiana tabacum HOM05D003928 ORTHO05D007133 1.8e-57 226.5 220 58.2
TWI15G0374 Tripterygium wilfordii HOM05D003928 ORTHO05D007133 1.8e-57 226.5 220 57.3
CAN.G1425.25 Capsicum annuum HOM05D003928 ORTHO05D007133 2.3e-57 226.1 220 58.2
Thecc.03G037800 Theobroma cacao HOM05D003928 ORTHO05D007133 2.3e-57 226.1 219 57.1
AL1G55480 Arabidopsis lyrata HOM05D003928 ORTHO05D007133 3.0e-57 225.7 210 58.6
PSO017G5964 Papaver somniferum HOM05D003928 ORTHO05D007133 3.0e-57 225.7 219 58.9
Sabra12G0038700 Salix brachista HOM05D003928 ORTHO05D007133 3.0e-57 225.7 219 56.2
Solyc03g119270.1 Solanum lycopersicum HOM05D003928 ORTHO05D007133 3.0e-57 225.7 220 58.6
Aqoxy3G00241 Aquilegia oxysepala HOM05D003928 ORTHO05D007133 5.1e-57 224.9 225 54.2
FAN18G3471 Fragaria x ananassa HOM05D003928 ORTHO05D007133 5.1e-57 224.9 219 57.1
Gohir.D12G267400 Gossypium hirsutum HOM05D003928 ORTHO05D007133 5.1e-57 224.9 219 57.5
PSO478G2973 Papaver somniferum HOM05D003928 ORTHO05D007133 5.1e-57 224.9 219 58.4
GSVIVG01008318001 Vitis vinifera HOM05D003928 ORTHO05D007133 5.1e-57 224.9 213 57.3
Carub.0003s1806 Capsella rubella HOM05D003928 ORTHO05D007133 6.7e-57 224.6 218 56.0
Atru.chr9.882 Acer truncatum HOM05D003928 ORTHO05D007133 8.8e-57 224.2 219 56.6
AL3G31520 Arabidopsis lyrata HOM05D003928 ORTHO05D007133 8.8e-57 224.2 218 57.8
Ciclev10018705m.g Citrus clementina HOM05D003928 ORTHO05D007133 8.8e-57 224.2 208 60.1
Gorai.008G287400 Gossypium raimondii HOM05D003928 ORTHO05D007133 8.8e-57 224.2 219 57.5
Sc04g0003430 Simmondsia chinensis HOM05D003928 ORTHO05D007133 4.3e-56 221.9 223 56.1
ATR1125G015 Amborella trichopoda HOM05D003928 ORTHO05D007133 5.7e-56 221.5 207 55.6
AUR62033807 Chenopodium quinoa HOM05D003928 ORTHO05D007133 9.7e-56 220.7 223 54.3
EL10Ac4g08652 Beta vulgaris HOM05D003928 ORTHO05D007133 1.3e-55 220.3 224 56.2
AUR62029899 Chenopodium quinoa HOM05D003928 ORTHO05D007133 1.7e-55 219.9 223 54.3
Peaxi162Scf00683g00003 Petunia axillaris HOM05D003928 ORTHO05D007133 1.7e-55 219.9 220 55.0
Potri.015G045600 Populus trichocarpa HOM05D003928 ORTHO05D007133 2.2e-55 219.5 220 55.5
TAR629G1514 Trochodendron aralioides HOM05D003928 ORTHO05D007133 2.2e-55 219.5 180 65.0
HanXRQChr17g0558301 Helianthus annuus HOM05D003928 ORTHO05D007133 8.2e-55 217.6 224 56.7
SEGI_04687 Sequoiadendron giganteum HOM05D003928 ORTHO05D007133 1.4e-54 216.9 216 53.7
Cc04_g07000 Coffea canephora HOM05D003928 ORTHO05D007133 5.3e-54 214.9 226 52.7
Sabra15G0040100 Salix brachista HOM05D003928 ORTHO05D007133 5.3e-54 214.9 220 55.0
Ah.15g090400 Amaranthus hybridus HOM05D003928 ORTHO05D007133 6.9e-54 214.5 218 54.1
Lalb_Chr22g0353161 Lupinus albus HOM05D003928 ORTHO05D007133 1.5e-53 213.4 219 53.9
DCAR_023214 Daucus carota HOM05D003928 ORTHO05D007133 4.5e-53 211.8 222 53.2
Gohir.A12G266900 Gossypium hirsutum HOM05D003928 ORTHO05D007133 4.5e-53 211.8 203 59.1
Rhsim08G0131700 Rhododendron simsii HOM05D003928 ORTHO05D007133 4.5e-53 211.8 219 54.8
SHI26956 Sapria himalayana HOM05D003928 ORTHO05D007133 2.2e-52 209.5 218 52.3
SGA_v2.0_scaffold25G10975 Striga asiatica HOM05D003928 ORTHO05D007133 2.9e-52 209.1 221 51.6
ECA233G2967 Erigeron canadensis HOM05D003928 ORTHO05D007133 3.2e-51 205.7 220 52.7
MBI16_g28239_MAGBIO Magnolia biondii HOM05D003928 ORTHO05D007133 1.6e-50 203.4 216 54.2
AagrBONN_evm.TU.Sc2ySwM_368.2497 Anthoceros agrestis HOM05D003928 ORTHO05D007133 3.6e-50 202.2 215 48.4
Oeu000997.1 Olea europaea HOM05D003928 ORTHO05D007133 3.9e-49 198.7 220 49.5
CiPaw.16G088000 Carya illinoinensis HOM05D003928 ORTHO05D007133 2.2e-47 193.0 122 78.7
SMO367G0105 Selaginella moellendorffii HOM05D003928 ORTHO05D007133 8.2e-47 191.0 207 50.2
Migut.I00406 Erythranthe guttata HOM05D003928 ORTHO05D007133 1.1e-46 190.7 215 50.2
TAR371G0905 Trochodendron aralioides HOM05D003928 ORTHO05D018521 4.5e-45 185.3 129 72.1
COL.COLO4_05244 Corchorus olitorius HOM05D003928 ORTHO05D007133 4.2e-43 178.7 151 64.2
CBR_g44606 Chara braunii HOM05D003928 ORTHO05D007133 1.7e-39 166.8 202 42.1
Lj5A151T51 Lonicera japonica HOM05D003928 ORTHO05D007133 5.7e-32 141.7 199 48.2
MCO13G008 Micromonas commoda HOM05D003928 ORTHO05D007133 5.3e-30 135.2 218 37.2
Hund10276 Selenicereus undatus HOM05D003928 ORTHO05D007133 1.6e-26 123.6 182 43.4
HPP92_023134 Vanilla planifolia HOM05D003928 ORTHO05D007133 2.7e-26 122.9 156 48.7
MBI16_g33214_MAGBIO Magnolia biondii HOM05D003928 ORTHO05D007133 3.6e-26 122.5 172 43.6
PRCOL_00004580 Prasinoderma coloniale HOM05D003928 ORTHO05D007133 3.6e-26 122.5 199 37.2
Os01g0512200 Oryza sativa ssp. japonica HOM05D003928 ORTHO05D007133 5.4e-22 108.6 216 36.1
Nitab4.5_0003433g0050 Nicotiana tabacum HOM05D003928 ORTHO05D007133 2.7e-21 106.3 155 43.9
Zm00001eb410080 Zea mays HOM05D003928 ORTHO05D007133 2.7e-21 106.3 214 36.9
Zm00001eb137140 Zea mays HOM05D003928 ORTHO05D007133 1.6e-18 97.1 120 46.7
BcaC03g15768 Brassica carinata HOM05D003928 ORTHO05D018521 3.6e-18 95.9 99 54.5
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 5.7e-16 88.6 72 62.5
C02p35100 Brassica napus HOM05D003928 ORTHO05D018521 3.1e-14 82.8 60 65.0
BolC2t09524H Brassica oleracea HOM05D003928 ORTHO05D018521 5.4e-14 82.0 99 46.5
CiPaw.16G051800 Carya illinoinensis HOM05D003928 ORTHO05D007133 4.5e-13 79.0 64 57.8
C05p27100 Brassica napus HOM05D003902 ORTHO05D018521 5.9e-13 78.6 56 66.1
BolC3t16824H Brassica oleracea HOM05D003902 ORTHO05D018521 8.6e-12 74.7 52 69.2
BcaB07g32364 Brassica carinata HOM05D000929 ORTHO05D003255 8.9e-09 64.7 126 30.2
BcaB07g32366 Brassica carinata HOM05D000929 ORTHO05D003255 8.9e-09 64.7 126 30.2
A09p40930 Brassica napus HOM05D000929 ORTHO05D003255 8.9e-09 64.7 126 30.2
C05p23090 Brassica napus HOM05D000929 ORTHO05D003255 8.9e-09 64.7 126 30.2
BolC5t31007H Brassica oleracea HOM05D000929 ORTHO05D003255 8.9e-09 64.7 126 30.2
BraA09t39583Z Brassica rapa HOM05D000929 ORTHO05D003255 8.9e-09 64.7 126 30.2
C01p46640 Brassica napus HOM05D002288 ORTHO05D001029 1.5e-08 63.9 97 43.3
BolC1t04631H Brassica oleracea HOM05D001214 ORTHO05D001029 1.5e-08 63.9 97 43.3
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 2.0e-08 63.5 43 69.8
CARHR024300 Cardamine hirsuta HOM05D000929 ORTHO05D003255 4.4e-08 62.4 117 29.9
BcaC06g35060 Brassica carinata HOM05D000929 ORTHO05D003255 9.8e-08 61.2 117 29.1
BcaB03g14129 Brassica carinata HOM05D000929 ORTHO05D003255 1.3e-07 60.8 117 29.1
A07p13710 Brassica napus HOM05D000929 ORTHO05D003255 1.3e-07 60.8 117 29.1
BolC7t42538H Brassica oleracea HOM05D000929 ORTHO05D003255 1.3e-07 60.8 117 29.1
BraA07t29122Z Brassica rapa HOM05D000929 ORTHO05D003255 1.3e-07 60.8 117 29.1
Cfa026228 Carpinus fangiana HOM05D000929 ORTHO05D004137 1.3e-07 60.8 172 25.6
Thhalv10006767m.g Eutrema salsugineum HOM05D000929 ORTHO05D003255 1.3e-07 60.8 117 29.1
Sp1g21250 Schrenkiella parvula HOM05D000929 ORTHO05D003255 1.3e-07 60.8 117 29.1
THA.LOC104822131 Tarenaya hassleriana HOM05D000929 ORTHO05D003255 1.7e-07 60.5 117 29.1
AL1G37650 Arabidopsis lyrata HOM05D000929 ORTHO05D003255 2.9e-07 59.7 117 29.1
C07p20170 Brassica napus HOM05D000929 ORTHO05D003255 2.9e-07 59.7 115 28.7
AT1G23900 Arabidopsis thaliana HOM05D000929 ORTHO05D003255 3.7e-07 59.3 117 29.1
BcaB04g20249 Brassica carinata HOM05D000929 ORTHO05D003255 3.7e-07 59.3 126 29.4
Carub.0001s2339 Capsella rubella HOM05D000929 ORTHO05D003255 3.7e-07 59.3 117 29.1
Sc04g0009010 Simmondsia chinensis HOM05D000929 ORTHO05D003255 6.4e-07 58.5 117 28.2
Psat4g127600 Pisum sativum HOM05D000929 ORTHO05D003255 1.4e-06 57.4 117 29.1
Sp2g04530 Schrenkiella parvula HOM05D000929 ORTHO05D003255 2.4e-06 56.6 126 28.6
arahy.Tifrunner.gnm1.ann1.MKS3V3 Arachis hypogaea HOM05D000929 ORTHO05D003255 3.2e-06 56.2 117 29.9
TPR.G31964 Trifolium pratense HOM05D000929 ORTHO05D003255 3.2e-06 56.2 117 28.2
Atru.chr11.1995 Acer truncatum HOM05D000929 ORTHO05D003255 4.1e-06 55.8 117 29.1
Thhalv10023264m.g Eutrema salsugineum HOM05D000929 ORTHO05D003255 4.1e-06 55.8 126 28.6
Medtr8g063690 Medicago truncatula HOM05D000929 ORTHO05D003255 4.1e-06 55.8 117 28.2
Potri.006G092800 Populus trichocarpa HOM05D000929 ORTHO05D003255 4.1e-06 55.8 126 28.6
Glyma.08G289100 Glycine max HOM05D000929 ORTHO05D003255 5.4e-06 55.5 117 28.2
Sabra06G0070500 Salix brachista HOM05D000929 ORTHO05D003255 5.4e-06 55.5 126 28.6
SEGI_27871 Sequoiadendron giganteum HOM05D000929 ORTHO05D003255 5.4e-06 55.5 117 28.2
Dinv24884 Davidia involucrata HOM05D000929 ORTHO05D003255 7.0e-06 55.1 117 27.4
Phvul.003G053300 Phaseolus vulgaris HOM05D000929 ORTHO05D003255 7.0e-06 55.1 117 29.1
Hund25335 Selenicereus undatus HOM05D000929 ORTHO05D003255 7.0e-06 55.1 117 27.4
AT1G60070 Arabidopsis thaliana HOM05D000929 ORTHO05D003255 9.2e-06 54.7 117 28.2
MSTRG.606 Avicennia marina HOM05D000929 ORTHO05D003255 9.2e-06 54.7 117 26.5
Carub.0002s0518 Capsella rubella HOM05D000929 ORTHO05D003255 9.2e-06 54.7 117 28.2
Eucgr.B03952 Eucalyptus grandis HOM05D000929 ORTHO05D003255 9.2e-06 54.7 117 28.2
Sc11g0001280 Simmondsia chinensis HOM05D000929 ORTHO05D003255 9.2e-06 54.7 112 27.7
Solyc04g025870.4 Solanum lycopersicum HOM05D000929 ORTHO05D003255 9.2e-06 54.7 117 27.4
Sopen04g013480 Solanum pennellii HOM05D000929 ORTHO05D003255 9.2e-06 54.7 117 27.4
Zm00001eb192060 Zea mays HOM05D000929 ORTHO05D003255 9.2e-06 54.7 118 25.4


User provided reference genes

Program Settings