Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 0.0e+00 1766.5 922 100.0
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 0.0e+00 1256.1 905 76.8
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 0.0e+00 1238.4 926 70.0
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 0.0e+00 1215.3 930 68.3
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 0.0e+00 1123.2 918 63.8
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 0.0e+00 1109.0 881 64.2
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1082.8 882 63.4
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 5.7e-311 1070.8 884 60.9
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 7.6e-311 1070.5 881 61.4
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 4.2e-306 1054.7 915 60.9
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.6e-305 1052.7 878 61.8
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 6.2e-302 1040.8 877 61.1
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 3.9e-296 1021.5 877 59.2
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 2.2e-294 1015.8 880 59.3
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.6e-292 1008.8 883 59.1
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.3e-291 1006.5 890 58.5
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 5.0e-291 1004.6 894 59.4
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.5e-291 1003.8 895 58.8
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 3.2e-290 1001.9 923 58.8
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 5.5e-290 1001.1 883 58.6
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 5.5e-290 1001.1 881 59.1
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 3.6e-289 998.4 883 58.3
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.3e-288 995.7 881 58.6
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.5e-287 993.0 876 58.9
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.8e-285 986.1 883 58.1
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 1.8e-285 986.1 927 57.0
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 2.4e-285 985.7 868 59.4
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 6.9e-285 984.2 879 58.8
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 4.5e-284 981.5 883 58.1
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 9.4e-282 973.8 763 63.4
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.2e-281 973.4 893 56.3
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 7.9e-281 970.7 912 57.2
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.1e-279 966.8 915 56.0
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 2.8e-278 962.2 879 56.3
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 7.0e-277 957.6 909 57.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.5e-276 956.4 878 56.7
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 2.9e-275 952.2 879 55.1
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.9e-275 952.2 878 56.5
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 3.9e-272 941.8 925 55.0
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 2.6e-271 939.1 907 54.6
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 2.8e-270 935.6 828 57.9
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-269 933.7 878 55.7
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.4e-269 933.3 911 55.3
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.1e-269 932.2 841 56.2
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 7.0e-269 931.0 908 55.2
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-268 930.2 878 55.5
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.6e-268 929.1 886 55.2
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.2e-267 926.0 854 56.7
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.9e-267 925.6 845 55.3
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 8.5e-267 924.1 878 55.5
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 4.7e-265 918.3 850 56.9
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 7.5e-263 911.0 941 53.0
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 2.2e-262 909.4 875 55.5
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 2.8e-262 909.1 885 54.7
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 8.3e-262 907.5 896 54.2
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.7e-260 902.5 854 55.7
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 2.7e-260 902.5 935 53.2
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 3.5e-260 902.1 848 56.8
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.8e-259 898.7 874 55.8
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 6.1e-257 891.3 950 51.5
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 9.8e-255 884.0 932 51.2
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.8e-254 882.5 873 54.4
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.8e-254 881.7 876 54.0
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.0e-252 876.3 892 53.5
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 2.0e-252 876.3 951 50.3
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 4.5e-252 875.2 908 51.1
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.3e-251 873.6 866 53.7
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 3.0e-248 862.4 884 52.7
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 4.0e-248 862.1 888 51.9
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 7.5e-247 857.8 892 51.1
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 5.6e-242 841.6 849 54.3
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.6e-241 840.1 773 58.6
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.9e-240 834.3 894 52.2
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.1e-232 809.3 1346 38.3
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 7.0e-229 798.1 885 48.5
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.9e-227 792.3 858 50.8
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 4.7e-225 785.4 861 51.1
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.8e-224 783.5 883 51.1
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 4.9e-222 775.4 861 47.9
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.1e-219 765.4 880 50.1
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.3e-218 761.5 880 49.7
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.2e-212 744.2 884 48.3
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.8e-208 730.3 912 46.1
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.0e-208 728.0 872 48.7
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 6.6e-203 711.8 867 48.4
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 5.8e-199 698.7 882 45.6
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 5.8e-199 698.7 882 45.6
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 2.2e-198 696.8 833 45.3
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 4.9e-198 695.7 758 50.1
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 2.1e-196 690.3 1378 35.1
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.9e-195 686.0 860 45.1
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 5.1e-195 685.6 860 45.0
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 8.1e-193 678.3 928 43.4
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 8.1e-193 678.3 880 45.9
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.8e-192 677.2 853 45.4
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 3.1e-192 676.4 853 45.1
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 3.1e-192 676.4 867 44.8
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 2.6e-191 673.3 864 44.6
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 3.4e-191 672.9 857 44.5
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.9e-189 667.2 855 45.0
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 7.1e-189 665.2 855 44.3
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.8e-187 660.6 904 42.6
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.5e-186 657.5 674 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.6e-183 646.7 910 42.5
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 5.0e-182 642.5 852 43.3
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-178 630.9 927 41.5
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 3.3e-178 629.8 725 45.9
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.8e-171 607.4 900 40.7
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 9.1e-168 595.1 462 67.3
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.5e-167 592.8 523 58.7
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 8.5e-166 588.6 924 40.7
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.4e-165 587.8 877 40.7
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.1e-152 543.5 465 59.1
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 7.7e-151 538.9 411 66.4
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 8.5e-150 535.4 578 52.1
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.2e-130 471.9 653 43.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.2e-120 437.2 336 63.7
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.0e-119 434.5 323 65.9
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 3.7e-113 413.7 387 54.0
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.1e-108 397.9 439 48.3
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 1.8e-107 394.8 410 51.0
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 6.8e-107 392.9 798 33.0
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 8.4e-105 386.0 394 53.6
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 4.6e-103 380.2 355 56.6
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 3.0e-102 377.5 1092 26.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 6.6e-102 376.3 313 61.0
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 2.8e-100 370.9 810 33.7
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.7e-100 370.2 532 43.0
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.4e-99 368.6 363 53.2
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.6e-95 353.6 395 51.4
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 2.5e-93 347.8 401 48.6
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 9.3e-88 329.3 271 60.9
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 4.6e-87 327.0 419 44.2
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.6e-84 318.5 470 40.0
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 7.6e-82 309.7 624 33.8
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 3.5e-71 274.2 250 55.6
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 6.7e-70 270.0 193 65.3
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-69 269.2 348 44.3
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 2.8e-68 264.6 278 51.8
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.8e-68 263.8 506 35.0
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.8e-67 261.9 308 47.4
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.5e-61 241.5 332 41.9
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 2.4e-59 235.0 181 66.9
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 7.7e-58 229.9 178 63.5
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-50 205.7 358 36.3
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.7e-44 185.7 139 63.3
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.8e-44 184.1 120 73.3
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 8.2e-44 183.3 337 38.3
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 7.0e-43 180.3 355 32.1
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.2e-40 171.0 230 44.3
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 5.2e-38 164.1 204 46.1
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.2e-36 158.7 250 38.4
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 2.2e-36 158.7 250 45.2
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 3.5e-34 151.4 129 59.7
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-32 146.4 100 67.0
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.9e-32 145.6 185 48.6
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.2e-31 142.9 147 52.4
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 8.0e-31 140.2 151 49.7
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 8.0e-31 140.2 163 49.1
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.8e-30 139.0 188 48.9
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 6.8e-30 137.1 89 73.0
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.3e-28 132.9 90 64.4
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 3.7e-28 131.3 116 56.0
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.4e-27 128.6 114 62.3
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 9.1e-27 126.7 84 69.0
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.5e-24 118.6 81 67.9
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 3.2e-24 118.2 135 46.7
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 5.5e-24 117.5 80 70.0
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-20 106.3 125 46.4
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 6.3e-20 104.0 87 55.2
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 7.3e-16 90.5 107 43.9
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 6.1e-15 87.4 61 62.3
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 6.1e-15 87.4 101 46.5
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.0e-13 82.4 105 41.9
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 1.3e-12 79.7 88 54.5
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 3.2e-11 75.1 49 67.3
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 4.6e-10 71.2 71 49.3
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 4.6e-10 71.2 48 62.5
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 2.3e-09 68.9 96 41.7
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 1.5e-08 66.2 83 51.8
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.3e-08 64.7 46 76.1
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 4.3e-08 64.7 83 43.4
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 2.1e-07 62.4 80 42.5
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.4e-06 59.7 54 51.9
SEGI_31377 Sequoiadendron giganteum HOM05D003469 ORTHO05D029064 6.8e-06 57.4 48 52.1


User provided reference genes

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