Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 4.5e-291 1003.8 487 100.0
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.7e-229 799.3 491 79.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.9e-229 797.7 491 79.6
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.9e-229 797.7 489 79.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 5.4e-220 767.7 489 75.5
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.7e-219 765.4 489 75.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.1e-215 753.4 489 74.4
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 7.5e-214 747.3 489 73.6
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.2e-211 740.0 501 72.7
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 4.6e-211 738.0 489 74.4
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 9.5e-209 730.3 500 71.4
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.2e-208 729.9 487 74.7
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 5.2e-207 724.5 557 66.6
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.7e-205 719.5 493 73.4
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 6.4e-205 717.6 495 74.5
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.2e-204 715.3 489 73.0
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.2e-203 713.4 494 72.7
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.7e-202 709.5 489 72.4
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.0e-202 708.8 492 72.2
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 6.6e-202 707.6 492 72.4
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.1e-201 706.8 492 71.7
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 7.3e-201 704.1 489 71.2
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 3.6e-200 701.8 489 70.8
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 2.4e-199 699.1 501 71.3
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.4e-198 694.9 495 70.3
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 9.3e-196 687.2 489 69.9
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.2e-195 686.8 491 69.7
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.7e-195 685.6 491 69.7
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 9.6e-193 677.2 489 67.3
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.8e-192 674.9 491 69.7
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.4e-190 668.7 560 61.8
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.5e-190 668.3 497 69.6
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 8.4e-189 664.1 488 68.0
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.4e-188 663.3 440 71.8
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.4e-188 663.3 494 67.6
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 4.2e-188 661.8 489 67.7
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 9.3e-188 660.6 489 67.3
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 6.6e-186 654.4 492 67.3
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.5e-185 652.5 487 66.5
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.3e-185 652.1 489 67.1
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 5.6e-185 651.4 478 68.2
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 9.6e-185 650.6 493 66.5
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 9.6e-185 650.6 493 66.5
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.8e-184 649.0 481 67.8
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.2e-184 647.9 489 67.5
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.5e-182 643.3 741 49.0
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.0e-182 642.9 474 69.2
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.5e-182 641.7 399 77.7
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.5e-182 641.7 488 65.4
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 4.9e-181 638.3 477 69.8
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.0e-178 630.6 491 65.4
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-178 629.4 487 63.4
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 3.9e-178 628.6 490 64.7
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 3.9e-178 628.6 447 70.7
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 5.1e-178 628.2 399 75.4
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 8.7e-178 627.5 488 65.0
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.3e-176 623.6 457 66.1
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 2.8e-176 622.5 460 67.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.8e-176 621.7 501 63.3
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 8.1e-176 620.9 457 66.5
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 3.1e-175 619.0 402 73.1
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 9.3e-172 607.4 461 66.8
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.7e-171 605.9 520 61.5
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.7e-171 605.9 512 63.9
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.7e-171 605.9 489 63.8
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.8e-170 603.2 446 68.2
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.3e-170 602.8 486 64.0
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.0e-170 602.4 516 62.8
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 5.1e-170 601.7 486 63.8
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.1e-169 600.5 490 61.8
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.3e-168 597.0 402 72.6
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.8e-168 595.9 490 61.0
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 6.3e-168 594.7 458 63.8
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 2.4e-167 592.8 490 61.4
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 2.4e-167 592.8 396 70.7
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 4.1e-167 592.0 317 90.2
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 6.9e-167 591.3 490 61.0
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 2.0e-166 589.7 397 72.0
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 5.9e-166 588.2 512 61.5
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 5.9e-166 588.2 406 70.2
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.2e-165 586.3 488 60.0
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.2e-165 586.3 406 70.2
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.8e-165 585.5 499 60.9
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.5e-164 582.8 499 62.1
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.2e-163 580.5 488 60.0
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 7.9e-163 577.8 528 59.1
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 8.7e-162 574.3 555 57.7
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.1e-161 573.9 406 70.7
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.5e-161 573.5 415 69.6
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.8e-160 569.3 402 69.4
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.4e-159 567.0 400 70.5
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.4e-159 566.2 489 61.1
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.2e-158 563.9 488 58.4
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 2.6e-158 562.8 430 66.3
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 2.6e-158 562.8 613 52.0
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.7e-157 560.1 430 65.8
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 3.8e-157 558.9 518 59.3
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 5.0e-157 558.5 488 57.4
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.4e-156 557.0 489 57.3
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.4e-156 557.0 431 66.1
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.9e-156 556.6 498 60.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.5e-156 556.2 430 65.3
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.4e-154 550.4 480 59.0
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.0e-154 549.3 391 69.3
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.0e-154 549.3 427 66.3
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 8.8e-154 547.7 406 65.8
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 9.7e-153 544.3 493 58.0
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.7e-152 542.3 427 61.1
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.0e-150 536.6 418 62.0
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.6e-150 536.2 447 58.8
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.4e-150 535.8 469 59.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 4.5e-150 535.4 461 59.7
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 7.7e-150 534.6 488 55.9
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 5.0e-149 531.9 489 56.6
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 5.0e-149 531.9 366 71.0
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.9e-148 530.0 498 57.6
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 3.2e-148 529.3 431 59.2
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 4.2e-148 528.9 368 69.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 7.2e-148 528.1 431 59.2
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 7.2e-148 528.1 431 59.2
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 9.4e-148 527.7 402 62.9
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.6e-147 526.9 463 59.8
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-147 526.9 463 59.8
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.6e-147 526.9 463 59.8
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 3.6e-147 525.8 490 54.9
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.8e-146 523.5 402 62.9
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 2.3e-146 523.1 404 61.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.0e-146 522.7 397 64.2
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.0e-146 522.7 402 62.2
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-145 520.8 513 53.2
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 2.0e-145 520.0 416 60.1
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 7.4e-145 518.1 495 54.7
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-144 516.9 432 58.3
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-144 516.9 462 58.7
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 2.2e-144 516.5 462 58.7
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 3.7e-144 515.8 483 56.9
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.0e-142 510.0 404 61.4
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.6e-142 509.6 405 63.0
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.7e-136 490.3 375 63.7
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 6.3e-136 488.4 458 54.8
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 7.2e-132 474.9 377 65.3
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.5e-129 467.2 400 57.5
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.1e-124 451.1 311 68.5
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.7e-120 437.2 400 53.2
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 4.9e-120 435.6 401 53.4
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.3e-109 400.2 376 54.3
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.0e-106 391.3 350 61.1
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.3e-100 369.4 257 72.4
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.2e-95 353.2 218 75.2
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.3e-93 347.8 227 75.3
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 3.3e-92 343.2 279 62.7
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 5.8e-81 305.8 202 70.3
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 9.0e-74 282.0 218 61.0
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.9e-73 278.5 413 44.8
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.3e-69 268.1 238 57.1
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 4.9e-64 249.6 311 44.1
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.3e-59 235.0 305 45.2
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 3.7e-51 206.8 437 33.0
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-38 165.2 138 60.1
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 3.6e-38 163.7 265 41.1
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.5e-36 158.3 119 68.1
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.3e-32 145.2 116 60.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.9e-32 144.1 163 48.5
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 5.0e-32 143.3 286 33.2
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.7e-30 136.7 656 23.9
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.4e-29 135.2 138 52.2
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.1e-26 123.6 105 60.0
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 2.7e-22 110.9 236 37.3
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.7e-22 110.9 122 52.5
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 8.5e-16 89.4 103 49.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.2e-11 74.7 367 24.8
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.8e-11 73.6 51 64.7
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.6e-09 68.6 50 60.0
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 8.0e-06 56.2 49 53.1


User provided reference genes

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