Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 2.4e-284 981.5 483 100.0
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 1.2e-267 926.0 483 93.8
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 5.8e-259 897.1 483 90.7
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 1.7e-258 895.6 483 91.1
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 1.3e-253 879.4 483 88.2
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 3.2e-249 864.8 483 87.0
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 4.6e-248 860.9 483 87.2
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 2.2e-245 852.0 483 85.3
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 2.4e-244 848.6 482 85.5
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 1.2e-243 846.3 483 84.9
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 2.6e-243 845.1 483 85.5
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 3.4e-243 844.7 483 85.9
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 5.9e-243 844.0 482 85.1
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 1.3e-242 842.8 482 85.9
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 5.0e-242 840.9 483 84.9
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.1e-241 839.7 483 84.7
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 2.5e-241 838.6 482 84.2
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.2e-241 838.2 483 84.7
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 3.2e-241 838.2 483 85.1
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 5.5e-241 837.4 484 84.3
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 7.2e-241 837.0 483 84.7
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 7.2e-241 837.0 482 84.0
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 9.4e-241 836.6 483 84.5
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 9.4e-241 836.6 483 84.7
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 1.2e-240 836.3 483 84.5
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 6.1e-240 833.9 484 84.1
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 6.1e-240 833.9 483 84.3
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 2.3e-239 832.0 482 83.0
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 2.3e-239 832.0 483 83.6
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 3.0e-239 831.6 485 84.3
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 3.9e-239 831.2 483 84.5
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 5.1e-239 830.9 483 84.1
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 6.7e-239 830.5 484 84.7
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 8.8e-239 830.1 484 85.1
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 1.1e-238 829.7 482 83.4
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 2.6e-238 828.6 484 84.7
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 1.3e-237 826.2 485 83.9
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 3.7e-237 824.7 484 83.9
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 4.8e-237 824.3 483 83.4
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 4.8e-237 824.3 483 83.2
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 2.4e-236 822.0 483 83.2
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 4.1e-236 821.2 483 83.2
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 9.1e-236 820.1 484 83.3
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 3.4e-235 818.1 483 82.6
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 1.7e-234 815.8 483 82.8
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 2.9e-234 815.1 484 81.6
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 5.0e-234 814.3 483 82.2
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 5.0e-234 814.3 483 82.6
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 8.5e-234 813.5 483 82.2
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.1e-233 813.1 483 82.2
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.1e-233 813.1 483 82.2
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 4.2e-233 811.2 485 82.7
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 5.5e-233 810.8 483 82.0
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 7.2e-233 810.4 514 78.8
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 1.6e-232 809.3 483 83.0
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 4.7e-232 807.7 483 81.4
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 8.0e-232 807.0 485 81.2
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 6.7e-231 803.9 485 81.9
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 8.8e-231 803.5 489 80.6
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 2.6e-230 802.0 481 81.7
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 3.3e-230 801.6 483 81.0
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 3.3e-230 801.6 484 82.0
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 3.3e-230 801.6 489 80.4
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 2.8e-229 798.5 481 82.1
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.8e-229 797.7 485 81.4
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 6.3e-229 797.3 483 82.0
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 6.3e-229 797.3 457 85.8
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 2.4e-228 795.4 486 82.1
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 9.1e-228 793.5 483 81.8
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 9.1e-228 793.5 484 81.0
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 1.6e-227 792.7 483 81.4
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 2.2e-226 788.9 484 80.4
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 5.0e-226 787.7 484 80.8
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.2e-224 783.1 417 89.9
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 1.2e-224 783.1 481 79.8
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 3.6e-224 781.6 484 79.8
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 4.7e-224 781.2 484 79.8
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 1.0e-223 780.0 484 79.1
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 1.4e-223 779.6 489 79.1
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 5.2e-223 777.7 486 78.8
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 5.2e-223 777.7 484 79.1
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 2.6e-222 775.4 483 79.1
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 2.6e-222 775.4 485 78.8
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 4.4e-222 774.6 483 78.7
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 8.2e-221 770.4 484 79.5
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 3.5e-219 765.0 482 78.0
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 6.5e-218 760.8 485 79.2
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 9.4e-217 756.9 488 77.9
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 9.4e-217 756.9 488 77.9
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 1.8e-215 752.7 485 78.6
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 2.8e-213 745.3 483 77.2
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 6.3e-213 744.2 481 76.9
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 6.3e-213 744.2 393 89.8
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 1.1e-212 743.4 396 89.1
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 3.1e-212 741.9 481 77.1
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 5.4e-212 741.1 481 77.1
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 9.1e-212 740.3 485 76.3
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 5.5e-209 731.1 489 75.3
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 7.8e-203 710.7 444 79.5
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 1.2e-200 703.4 447 78.5
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 2.4e-196 689.1 383 86.2
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 1.0e-194 683.7 481 72.3
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 1.3e-194 683.3 430 75.6
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 1.7e-194 682.9 409 77.3
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 2.8e-192 675.6 412 77.4
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 1.7e-189 666.4 441 73.0
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 2.7e-187 659.1 389 78.7
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.4e-182 641.7 432 75.0
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 1.9e-177 626.3 392 74.7
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 4.9e-173 611.7 483 66.0
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 6.9e-167 591.3 389 69.2
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 2.2e-165 586.3 397 66.8
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 4.0e-159 565.5 289 94.1
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 1.2e-155 553.9 289 92.4
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.8e-144 516.2 342 74.6
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.8e-135 486.9 275 81.8
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.6e-107 392.9 258 74.8
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.2e-104 383.6 237 78.5
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 8.0e-83 312.0 172 85.5
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.3e-61 240.7 196 61.7
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 1.1e-60 238.4 130 86.9
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.3e-60 236.9 135 85.2
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 2.8e-59 233.8 139 80.6
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 5.1e-53 213.0 158 67.7
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 4.0e-50 203.4 140 74.3
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 1.5e-36 158.3 94 83.0
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 6.5e-32 142.9 105 65.7
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 2.3e-13 81.3 59 66.1
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 3.9e-13 80.5 284 27.5
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 2.4e-10 71.2 288 27.1
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 3.8e-08 63.9 155 28.4
Sopen08g030690 Solanum pennellii HOM05D000776 ORTHO05D001624 8.5e-08 62.8 279 24.7
Solyc08g082440.3 Solanum lycopersicum HOM05D000776 ORTHO05D001624 1.1e-07 62.4 279 24.4
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 1.9e-07 61.6 158 25.9
FAN08G0150 Fragaria x ananassa HOM05D000776 ORTHO05D001624 5.5e-07 60.1 149 26.8
Lalb_Chr16g0390661 Lupinus albus HOM05D000776 ORTHO05D001624 5.5e-07 60.1 185 29.2
CiPaw.11G120200 Carya illinoinensis HOM05D000776 ORTHO05D001624 9.4e-07 59.3 128 28.1
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 9.4e-07 59.3 174 28.2
Nn2g15146 Nelumbo nucifera HOM05D000776 ORTHO05D001624 1.2e-06 58.9 127 29.9
Lalb_Chr09g0320631 Lupinus albus HOM05D000776 ORTHO05D001624 1.6e-06 58.5 146 32.2
Pp3c14_11550 Physcomitrium patens HOM05D000776 ORTHO05D002281 7.9e-06 56.2 151 30.5


User provided reference genes

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