Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 8.2e-134 481.9 292 100.0
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 8.8e-128 461.8 308 92.5
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 6.0e-92 342.8 289 74.7
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 6.6e-91 339.3 262 82.1
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 4.3e-90 336.7 265 80.8
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 3.6e-89 333.6 261 80.8
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 1.4e-88 331.6 282 77.3
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 5.4e-85 319.7 267 70.0
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 9.2e-85 318.9 266 77.1
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 9.2e-85 318.9 280 74.6
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.1e-84 317.8 269 78.1
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.6e-84 316.6 280 74.3
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 3.9e-83 313.5 267 69.3
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 5.6e-82 309.7 249 79.5
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.2e-81 308.5 266 75.6
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.2e-81 308.5 264 75.4
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 7.5e-79 299.3 269 75.5
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.7e-78 298.1 293 68.9
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 6.4e-78 296.2 262 72.9
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 2.4e-77 294.3 282 71.3
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 7.1e-77 292.7 285 68.1
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 2.1e-76 291.2 265 73.2
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 2.7e-76 290.8 265 71.7
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 2.7e-76 290.8 267 72.7
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 3.5e-76 290.4 265 73.2
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 6.0e-76 289.7 264 73.9
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 1.3e-75 288.5 268 73.9
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.3e-75 287.7 264 72.7
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 5.1e-75 286.6 297 65.3
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.9e-74 284.6 261 71.6
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.9e-74 284.6 261 72.0
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.9e-74 284.6 261 71.6
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.2e-73 282.0 259 69.9
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 2.1e-73 281.2 259 69.9
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 2.1e-73 281.2 263 65.8
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 3.6e-73 280.4 261 70.9
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 4.7e-73 280.0 262 74.0
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 4.7e-73 280.0 259 69.1
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 2.4e-72 277.7 296 64.5
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 1.2e-71 275.4 263 70.7
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.0e-71 274.6 260 70.4
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 3.4e-71 273.9 262 70.6
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 5.8e-71 273.1 260 70.0
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 5.8e-71 273.1 252 75.0
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 2.9e-70 270.8 265 55.8
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 4.9e-70 270.0 262 69.1
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 4.9e-70 270.0 285 66.7
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 4.9e-70 270.0 288 66.3
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.4e-69 268.5 290 59.7
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 7.1e-69 266.2 265 63.8
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 2.1e-68 264.6 259 68.3
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 6.6e-67 259.6 251 71.3
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 1.9e-66 258.1 258 67.8
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 2.5e-66 257.7 266 66.2
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 4.3e-66 256.9 266 66.2
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.3e-65 255.4 266 66.5
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.3e-65 255.4 266 66.5
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.3e-65 255.4 262 67.2
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.6e-65 255.0 266 65.4
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 2.1e-65 254.6 266 66.5
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 2.1e-65 254.6 266 66.2
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 4.8e-65 253.4 262 67.6
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 1.4e-64 251.9 266 66.2
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 1.8e-64 251.5 266 67.3
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 2.4e-64 251.1 266 65.4
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 2.4e-64 251.1 262 66.8
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 5.3e-64 250.0 266 64.3
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 6.9e-64 249.6 260 65.4
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 2.0e-63 248.1 266 65.0
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 2.0e-63 248.1 266 65.0
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 1.7e-62 245.0 270 66.7
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 3.8e-62 243.8 266 65.0
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 2.1e-60 238.0 236 67.8
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.3e-59 235.3 254 66.5
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 5.3e-56 223.4 217 73.3
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 3.4e-55 220.7 291 57.0
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 1.0e-51 209.1 266 60.9
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.0e-51 209.1 219 69.9
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 2.3e-51 208.0 218 72.0
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 3.0e-51 207.6 247 49.0
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 2.5e-50 204.5 218 68.8
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 5.6e-50 203.4 219 68.5
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 9.6e-50 202.6 222 67.1
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.6e-49 201.8 222 67.1
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 4.8e-49 200.3 225 66.7
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 8.1e-49 199.5 218 68.8
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 3.1e-48 197.6 226 66.8
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 2.0e-47 194.9 231 65.8
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 1.7e-46 191.8 281 54.8
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 1.7e-46 191.8 223 66.4
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 3.8e-46 190.7 144 69.4
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 7.9e-44 183.0 233 61.8
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 2.3e-43 181.4 148 61.5
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.1e-42 179.1 296 52.0
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 8.2e-41 172.9 219 62.1
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 2.6e-39 167.9 218 61.9
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 7.6e-39 166.4 218 61.5
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 1.6e-33 148.7 254 53.1
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 6.7e-27 126.7 95 67.4
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 2.7e-20 104.8 244 34.8
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 1.4e-19 102.4 68 73.5
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 3.0e-19 101.3 60 81.7
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 3.0e-19 101.3 60 81.7
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 2.2e-17 95.1 141 36.9
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 6.3e-17 93.6 68 64.7
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 6.3e-17 93.6 56 78.6
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 1.5e-15 89.0 235 29.8
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 3.5e-15 87.8 48 83.3
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 2.9e-14 84.7 163 31.9
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.7e-10 69.7 49 69.4
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 4.1e-08 64.3 69 50.7
PSO017G1665 Papaver somniferum HOM05D015807 ORTHO05D011376 7.0e-08 63.5 112 33.0
BcaB04g17239 Brassica carinata HOM05D006707 ORTHO05D008243 7.7e-07 60.1 59 57.6
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 3.8e-06 57.8 38 65.8


User provided reference genes

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