Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 0.0e+00 3753.0 1966 100.0
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 0.0e+00 1594.7 1988 52.8
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 0.0e+00 1357.8 2054 48.0
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 0.0e+00 1323.1 2012 47.2
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 0.0e+00 1269.2 2027 46.7
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 0.0e+00 1193.3 2008 43.8
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 0.0e+00 1176.8 1159 61.8
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 1142.9 1975 43.1
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 0.0e+00 1138.6 1926 44.5
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 0.0e+00 1133.2 2045 43.0
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 0.0e+00 1108.2 2066 43.0
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 0.0e+00 1089.3 1958 43.1
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 5.2e-298 1028.9 1922 41.8
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 2.0e-289 1000.3 1997 40.2
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 6.4e-280 968.8 2042 40.6
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.3e-252 876.3 2062 39.3
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 9.4e-247 858.6 1974 39.5
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 1.6e-246 857.8 1909 38.2
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 6.3e-243 845.9 2047 37.6
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.0e-241 840.9 1998 37.7
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 8.0e-238 828.9 1640 42.5
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.4e-237 828.2 650 72.6
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 3.7e-235 820.1 2045 36.7
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 2.2e-232 810.8 2124 36.3
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.7e-225 787.3 1956 37.9
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 3.8e-224 783.5 1882 37.6
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.9e-223 781.2 2108 36.0
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 7.2e-223 779.2 1881 37.4
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 8.0e-222 775.8 2095 36.0
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.0e-221 775.4 1910 37.5
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 9.8e-220 768.8 1859 37.0
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.0e-217 761.1 1930 36.9
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 7.2e-215 752.7 1855 37.5
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.7e-211 741.5 1963 35.7
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.7e-211 741.5 2026 35.1
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 2.7e-209 734.2 1996 35.6
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.0e-205 722.2 1252 43.9
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 6.6e-192 676.4 2017 34.1
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.7e-190 670.2 1707 37.4
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 7.8e-185 652.9 1801 34.6
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.0e-180 638.3 1995 33.3
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 2.0e-180 638.3 1815 35.3
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 6.4e-179 633.3 1985 33.0
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 4.6e-177 627.1 1726 35.7
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 3.9e-176 624.0 1999 33.6
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 8.7e-176 622.9 1775 35.3
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 9.6e-175 619.4 1915 34.0
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 2.8e-174 617.8 1755 34.7
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 8.4e-171 606.3 543 64.6
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.9e-170 605.1 1847 34.7
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 4.6e-169 600.5 1062 43.1
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.8e-165 588.6 1747 32.7
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.1e-165 587.8 1859 34.2
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 9.0e-165 586.3 1672 35.0
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 8.4e-163 579.7 1964 33.0
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 3.2e-162 577.8 1986 32.8
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 3.2e-162 577.8 787 48.4
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 5.4e-162 577.0 1977 32.4
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 4.5e-156 557.4 1700 33.9
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 4.9e-155 553.9 1739 33.8
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 6.4e-155 553.5 1933 33.2
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 7.4e-151 540.0 621 54.6
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 5.8e-148 530.4 1699 32.7
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 1.1e-146 526.2 1289 37.1
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 4.2e-146 524.2 2022 31.4
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.8e-141 508.8 2087 31.4
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 3.4e-140 504.6 2033 31.4
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.4e-138 499.2 1439 33.8
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 2.7e-137 495.0 1643 32.9
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 5.1e-136 490.7 1741 31.1
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 6.7e-136 490.3 767 45.9
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 8.8e-136 490.0 1864 31.8
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.1e-135 489.6 767 45.9
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 3.8e-131 474.6 1949 28.3
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 2.1e-129 468.8 2022 28.5
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 2.3e-128 465.3 1789 29.4
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.1e-127 463.0 1789 29.3
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.0e-127 462.2 615 49.4
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 1.7e-126 459.1 1656 31.2
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 4.8e-126 457.6 1969 29.3
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.8e-125 455.7 1934 29.7
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 2.6e-124 451.8 1888 28.8
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 2.6e-124 451.8 2072 29.3
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 5.0e-123 447.6 1934 28.3
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 2.2e-115 422.2 649 43.8
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 2.7e-113 415.2 1187 33.8
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.8e-112 412.5 1768 29.6
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.8e-112 412.5 717 41.7
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 2.3e-112 412.1 588 44.7
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 2.3e-112 412.1 588 44.7
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 2.8e-110 405.2 1881 29.1
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 2.4e-109 402.1 628 43.8
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 3.1e-109 401.7 626 43.5
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 8.5e-107 393.7 1413 29.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 1.2e-105 389.8 1411 29.8
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 2.7e-105 388.7 683 39.7
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 2.3e-104 385.6 298 68.5
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 1.2e-103 383.3 1848 29.0
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 8.3e-102 377.1 1551 31.3
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.0e-96 360.1 780 37.1
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.5e-90 339.0 308 59.1
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 2.0e-87 329.3 754 38.6
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 3.4e-87 328.6 684 38.3
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.2e-86 325.9 686 38.2
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 4.9e-86 324.7 643 40.1
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.2e-84 320.1 552 42.2
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.5e-82 312.4 324 59.0
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.3e-80 305.8 691 36.8
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 5.4e-77 294.7 738 33.7
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 3.1e-72 278.9 644 36.0
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 9.2e-69 267.3 667 34.5
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.6e-68 266.5 261 54.8
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 2.0e-63 249.6 247 55.9
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.1e-58 233.8 676 32.5
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 3.4e-55 222.2 1705 25.5
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 1.3e-54 220.3 406 39.4
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.0e-51 210.7 784 31.6
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 6.0e-44 184.9 1032 26.8
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 8.1e-41 174.5 225 45.8
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 5.3e-40 171.8 320 38.1
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 2.6e-39 169.5 429 34.7
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 4.5e-39 168.7 285 38.2
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 2.2e-38 166.4 98 75.5
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 3.8e-38 165.6 150 61.3
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 1.1e-37 164.1 112 73.2
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 3.9e-35 155.6 395 36.5
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.0e-30 141.0 128 56.2
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 2.8e-25 122.9 151 47.7
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 5.9e-23 115.2 106 67.9
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 1.8e-19 103.6 130 50.8
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.8e-16 93.6 110 50.0
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 4.1e-16 92.4 579 25.6
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.2e-07 64.3 457 27.6
Cre03.g154900 Chlamydomonas reinhardtii HOM05D000237 ORTHO05D006530 2.6e-07 63.2 73 42.5
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 1.0e-06 61.2 30 90.0


User provided reference genes

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