Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27263 Davidia involucrata HOM05D004195 ORTHO05D005309 1.4e-116 422.9 210 100.0
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 1.2e-94 350.1 194 89.2
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 1.8e-92 342.8 195 84.6
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 2.0e-91 339.3 194 83.5
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 3.3e-89 332.0 194 83.5
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 1.2e-88 330.1 194 83.0
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 3.6e-88 328.6 201 81.1
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 3.6e-88 328.6 201 81.6
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 2.3e-87 325.9 201 78.1
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 6.8e-87 324.3 194 80.4
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 2.6e-86 322.4 198 79.3
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 5.8e-86 321.2 194 78.4
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 2.9e-85 318.9 201 79.6
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 3.2e-84 315.5 192 77.6
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 5.4e-84 314.7 188 77.7
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 1.6e-83 313.2 195 78.5
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 2.0e-83 312.8 201 75.1
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 3.5e-83 312.0 195 76.4
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 4.6e-83 311.6 200 75.0
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 4.6e-83 311.6 199 76.4
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 2.3e-82 309.3 193 77.7
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 3.9e-82 308.5 201 77.1
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 5.0e-82 308.1 194 77.8
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 6.6e-82 307.8 192 77.6
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 1.1e-81 307.0 200 74.5
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 1.5e-81 306.6 195 76.4
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 1.5e-81 306.6 195 77.4
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 1.5e-81 306.6 195 76.9
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 2.5e-81 305.8 192 77.6
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 2.5e-81 305.8 175 81.1
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 4.3e-81 305.1 192 77.1
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 4.7e-80 301.6 191 77.5
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 4.7e-80 301.6 188 75.5
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.4e-79 300.1 194 77.8
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 1.8e-79 299.7 188 75.0
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 2.3e-79 299.3 190 75.8
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 2.3e-79 299.3 188 75.0
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 2.3e-79 299.3 200 74.5
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 3.1e-79 298.9 193 76.2
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 3.1e-79 298.9 200 73.5
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 5.2e-79 298.1 191 73.8
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 8.9e-79 297.4 199 73.9
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 8.9e-79 297.4 191 75.4
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 1.2e-78 297.0 191 75.9
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 3.4e-78 295.4 194 75.8
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 4.4e-78 295.0 188 74.5
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 5.8e-78 294.7 202 71.3
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 9.8e-78 293.9 178 78.1
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 9.8e-78 293.9 182 75.3
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 1.3e-77 293.5 191 76.4
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 1.3e-77 293.5 200 72.5
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 1.7e-77 293.1 201 74.1
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 2.2e-77 292.7 196 74.0
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.9e-77 292.4 200 73.0
Sopen04g025970 Solanum pennellii HOM05D004195 ORTHO05D005309 2.9e-77 292.4 186 74.2
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 3.7e-77 292.0 200 73.0
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 8.3e-77 290.8 191 74.3
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 1.9e-76 289.7 162 84.6
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.4e-76 289.3 200 72.5
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 3.2e-76 288.9 200 69.0
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 3.2e-76 288.9 195 72.8
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 7.1e-76 287.7 195 72.3
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 7.1e-76 287.7 195 73.3
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 7.1e-76 287.7 157 85.4
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 9.2e-76 287.3 216 65.7
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 9.2e-76 287.3 193 70.5
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 9.2e-76 287.3 173 77.5
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 2.1e-75 286.2 178 77.0
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 2.7e-75 285.8 162 84.0
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 3.5e-75 285.4 184 74.5
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 4.6e-75 285.0 200 69.5
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 4.6e-75 285.0 191 73.8
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 6.0e-75 284.6 195 72.3
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.0e-74 283.9 216 65.3
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 2.3e-74 282.7 188 73.9
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 3.0e-74 282.3 190 72.1
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 3.9e-74 282.0 195 69.2
AUR62013439 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.1e-73 280.4 191 71.7
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 1.9e-73 279.6 193 71.0
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 3.3e-73 278.9 201 68.7
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 9.5e-73 277.3 216 64.4
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.2e-72 276.9 220 65.0
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.1e-72 276.2 202 69.3
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 4.7e-72 275.0 173 74.0
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 4.0e-71 271.9 191 70.2
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 5.8e-70 268.1 175 73.7
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 7.5e-70 267.7 160 78.8
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 9.9e-70 267.3 191 68.6
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 2.2e-69 266.2 193 66.3
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 2.2e-69 266.2 185 70.8
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 1.4e-68 263.5 172 72.1
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 1.9e-68 263.1 185 68.6
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 9.2e-68 260.8 188 70.2
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 1.6e-67 260.0 187 70.6
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 1.6e-67 260.0 187 70.6
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 1.6e-67 260.0 187 70.6
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 1.6e-67 260.0 187 70.6
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 1.6e-67 260.0 187 70.6
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 4.6e-67 258.5 174 70.1
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 6.0e-67 258.1 184 69.0
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 7.8e-67 257.7 178 70.2
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 1.7e-66 256.5 152 78.9
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 2.3e-66 256.1 174 70.1
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 3.0e-66 255.8 195 64.1
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 3.0e-66 255.8 195 64.1
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 1.5e-65 253.4 174 68.4
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 2.5e-65 252.7 165 73.3
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 5.6e-65 251.5 174 69.5
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 5.6e-65 251.5 191 64.4
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 7.3e-65 251.1 175 67.4
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 1.2e-64 250.4 174 67.8
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 1.2e-64 250.4 174 67.8
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 1.6e-64 250.0 164 71.3
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 2.1e-64 249.6 174 67.8
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 6.2e-64 248.1 164 72.6
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 1.8e-63 246.5 164 72.0
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 5.2e-63 245.0 173 66.5
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 1.2e-62 243.8 174 66.1
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 4.6e-59 231.9 164 70.7
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 1.8e-55 219.9 150 69.3
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 3.1e-55 219.2 170 63.5
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 4.0e-55 218.8 163 64.4
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 2.0e-54 216.5 182 63.2
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 1.5e-49 200.3 200 56.0
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 1.6e-48 196.8 166 56.0
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 4.8e-48 195.3 198 54.0
Sed0012376 Sechium edule HOM05D004195 ORTHO05D005309 4.0e-47 192.2 126 76.2
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 3.4e-46 189.1 204 51.0
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 8.4e-45 184.5 184 50.5
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 1.4e-44 183.7 131 68.7
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 6.0e-43 178.3 173 54.9
Cpa.g.c44850 Carica papaya HOM05D004195 ORTHO05D005309 2.0e-38 163.3 112 73.2
Gohir.D08G239084 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.7e-37 160.2 113 72.6
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 9.3e-36 154.5 186 45.2
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 7.9e-35 151.4 202 45.5
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 2.3e-34 149.8 148 49.3
Ah.04g163400 Amaranthus hybridus HOM05D004195 ORTHO05D005309 3.3e-33 146.0 87 78.2
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 3.7e-32 142.5 176 48.3
Hund26746 Selenicereus undatus HOM05D004195 ORTHO05D005309 3.1e-31 139.4 114 64.0
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 1.2e-30 137.5 89 74.2
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 3.8e-29 132.5 94 68.1
Duzib213G0704 Durio zibethinus HOM05D004195 ORTHO05D005309 8.7e-26 121.3 80 68.8
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 4.6e-19 99.0 125 43.2
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 1.8e-18 97.1 64 70.3
Lsat_1_v5_gn_6_43121 Lactuca sativa HOM05D004195 ORTHO05D005309 7.9e-11 71.6 72 54.2
MBI11_g47560_MAGBIO Magnolia biondii HOM05D002408 ORTHO05D002534 2.3e-10 70.1 45 71.1
HPP92_005821 Vanilla planifolia HOM05D004195 ORTHO05D429708 5.1e-10 68.9 142 35.2
Lsat_1_v5_gn_9_125000 Lactuca sativa HOM05D004195 ORTHO05D005309 1.5e-09 67.4 72 47.2
MBI15_g02237_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D011926 2.4e-07 60.1 41 68.3


User provided reference genes

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