Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26620 Davidia involucrata HOM05D002238 ORTHO05D001984 4.3e-47 191.0 100 100.0
Rhsim01G0200000 Rhododendron simsii HOM05D002238 ORTHO05D001984 5.6e-39 164.1 97 87.6
Rhsim06G0175300 Rhododendron simsii HOM05D002238 ORTHO05D001984 5.6e-39 164.1 97 87.6
CSS0015125 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D001984 2.1e-38 162.2 97 85.6
CSS0035678 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D001984 2.1e-38 162.2 97 85.6
vmacro03834 Vaccinium macrocarpon HOM05D002238 ORTHO05D001984 2.1e-38 162.2 99 83.8
vmacro12095 Vaccinium macrocarpon HOM05D002238 ORTHO05D001984 2.1e-38 162.2 97 87.6
Dinv21284 Davidia involucrata HOM05D002238 ORTHO05D001984 1.4e-37 159.5 97 85.6
Hma1.2p1_0017F.1_g011480 Hydrangea macrophylla HOM05D002238 ORTHO05D001984 8.9e-37 156.8 98 83.7
Hma1.2p1_0108F.1_g051790 Hydrangea macrophylla HOM05D002238 ORTHO05D001984 1.2e-36 156.4 99 81.8
ECA238G4099 Erigeron canadensis HOM05D002238 ORTHO05D001984 2.6e-36 155.2 91 91.2
COL.COLO4_17143 Corchorus olitorius HOM05D002238 ORTHO05D001984 7.6e-36 153.7 97 82.5
TWI36G1349 Tripterygium wilfordii HOM05D002238 ORTHO05D001984 7.6e-36 153.7 89 91.0
Gohir.A05G411500 Gossypium hirsutum HOM05D002238 ORTHO05D001984 1.7e-35 152.5 97 81.4
Gohir.D04G004500 Gossypium hirsutum HOM05D002238 ORTHO05D001984 1.7e-35 152.5 97 81.4
Oeu009627.1 Olea europaea HOM05D002238 ORTHO05D001984 1.7e-35 152.5 95 80.0
Lj1A794T53 Lonicera japonica HOM05D002238 ORTHO05D001984 2.9e-35 151.8 95 81.1
Thecc.10G082400 Theobroma cacao HOM05D002238 ORTHO05D001984 2.9e-35 151.8 97 81.4
Cc02_g30130 Coffea canephora HOM05D002238 ORTHO05D001984 6.4e-35 150.6 95 77.9
MSTRG.27160 Avicennia marina HOM05D002238 ORTHO05D001984 8.4e-35 150.2 95 75.8
Migut.N01823 Erythranthe guttata HOM05D002238 ORTHO05D001984 8.4e-35 150.2 95 78.9
Gorai.012G005700 Gossypium raimondii HOM05D002238 ORTHO05D001984 8.4e-35 150.2 97 80.4
Ca_22317_v3 Cicer arietinum L. HOM05D002238 ORTHO05D001984 1.1e-34 149.8 97 83.5
Thhalv10021262m.g Eutrema salsugineum HOM05D002238 ORTHO05D001984 1.1e-34 149.8 91 86.8
GSVIVG01035933001 Vitis vinifera HOM05D002238 ORTHO05D001984 1.1e-34 149.8 91 87.9
HanXRQChr04g0126541 Helianthus annuus HOM05D002238 ORTHO05D001984 1.4e-34 149.4 97 81.4
Oeu027351.4 Olea europaea HOM05D002238 ORTHO05D001984 1.4e-34 149.4 95 78.9
HanXRQChr17g0537591 Helianthus annuus HOM05D002238 ORTHO05D001984 1.9e-34 149.1 97 81.4
MD17G1115700 Malus domestica HOM05D002238 ORTHO05D001984 1.9e-34 149.1 97 80.4
Prupe.3G198900 Prunus persica HOM05D002238 ORTHO05D001984 1.9e-34 149.1 97 82.5
Sp3g06680 Schrenkiella parvula HOM05D002238 ORTHO05D001984 1.9e-34 149.1 91 85.7
Duzib114G0194 Durio zibethinus HOM05D002238 ORTHO05D001984 2.4e-34 148.7 97 80.4
PGR044G1809 Punica granatum HOM05D002238 ORTHO05D001984 2.4e-34 148.7 97 81.4
QL02p019830 Quercus lobata HOM05D002238 ORTHO05D001984 2.4e-34 148.7 96 78.1
CiPaw.01G209500 Carya illinoinensis HOM05D002238 ORTHO05D001984 3.2e-34 148.3 97 79.4
Nn3g19738 Nelumbo nucifera HOM05D002238 ORTHO05D001984 3.2e-34 148.3 97 79.4
Cpa.g.sc211.23 Carica papaya HOM05D002238 ORTHO05D001984 4.2e-34 147.9 91 83.5
Lj2g0027163 Lotus japonicus HOM05D002238 ORTHO05D001984 4.2e-34 147.9 97 80.4
Medtr8g077430 Medicago truncatula HOM05D002238 ORTHO05D001984 4.2e-34 147.9 98 80.6
arahy.Tifrunner.gnm1.ann1.VW2QG0 Arachis hypogaea HOM05D002238 ORTHO05D001984 5.4e-34 147.5 95 77.9
arahy.Tifrunner.gnm1.ann1.DIZ14G Arachis hypogaea HOM05D002238 ORTHO05D001984 7.1e-34 147.1 95 76.8
A05p40470 Brassica napus HOM05D002238 ORTHO05D001984 9.2e-34 146.7 91 83.5
CANSAT21G0573 Cannabis sativa HOM05D002238 ORTHO05D001984 9.2e-34 146.7 96 80.2
CANSAT21G2220 Cannabis sativa HOM05D002238 ORTHO05D001984 9.2e-34 146.7 96 80.2
Carub.0003s0733 Capsella rubella HOM05D002238 ORTHO05D001984 9.2e-34 146.7 91 84.6
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.2e-33 146.4 97 79.4
PSO541G0351 Papaver somniferum HOM05D002238 ORTHO05D001984 1.2e-33 146.4 95 78.9
Phvul.004G077200 Phaseolus vulgaris HOM05D002238 ORTHO05D001984 1.2e-33 146.4 97 80.4
BcaC05g29568 Brassica carinata HOM05D002238 ORTHO05D001984 1.6e-33 146.0 91 82.4
CAN.G1394.37 Capsicum annuum HOM05D002238 ORTHO05D001984 1.6e-33 146.0 95 81.1
Ca_12576_v3 Cicer arietinum L. HOM05D002238 ORTHO05D001984 1.6e-33 146.0 97 78.4
Lsat_1_v5_gn_7_95300 Lactuca sativa HOM05D002238 ORTHO05D001984 1.6e-33 146.0 97 78.4
Ciclev10016158m.g Citrus clementina HOM05D002238 ORTHO05D001984 2.1e-33 145.6 97 80.4
Sabra14G0126500 Salix brachista HOM05D002238 ORTHO05D001984 2.1e-33 145.6 95 78.9
Solyc08g007520.4 Solanum lycopersicum HOM05D002238 ORTHO05D001984 2.1e-33 145.6 95 81.1
Sopen08g003480 Solanum pennellii HOM05D002238 ORTHO05D001984 2.1e-33 145.6 95 81.1
TAR629G0143 Trochodendron aralioides HOM05D002238 ORTHO05D001984 2.1e-33 145.6 97 79.4
Glyma.16G151700 Glycine max HOM05D002238 ORTHO05D001984 2.7e-33 145.2 97 80.4
MD09G1125700 Malus domestica HOM05D002238 ORTHO05D001984 2.7e-33 145.2 95 78.9
THA.LOC104819037 Tarenaya hassleriana HOM05D002238 ORTHO05D001984 2.7e-33 145.2 91 85.7
AT3G07750 Arabidopsis thaliana HOM05D002238 ORTHO05D001984 3.5e-33 144.8 91 83.5
BraA05t22780Z Brassica rapa HOM05D002238 ORTHO05D001984 3.5e-33 144.8 89 83.1
AUR62004701 Chenopodium quinoa HOM05D002238 ORTHO05D001984 3.5e-33 144.8 97 77.3
PSO675G0487 Papaver somniferum HOM05D002238 ORTHO05D001984 3.5e-33 144.8 95 77.9
Prupe.6G340200 Prunus persica HOM05D002238 ORTHO05D001984 3.5e-33 144.8 97 80.4
Zm00001eb228810 Zea mays HOM05D002238 ORTHO05D001984 3.5e-33 144.8 94 78.7
Zm00001eb228830 Zea mays HOM05D002238 ORTHO05D001984 3.5e-33 144.8 94 78.7
Potri.014G166200 Populus trichocarpa HOM05D002238 ORTHO05D001984 4.6e-33 144.4 95 78.9
Zm00001eb228850 Zea mays HOM05D002238 ORTHO05D001984 4.6e-33 144.4 94 77.7
Glyma.02G070100 Glycine max HOM05D002238 ORTHO05D001984 6.0e-33 144.1 94 78.7
PGSC0003DMG400012510 Solanum tuberosum HOM05D002238 ORTHO05D001984 6.0e-33 144.1 95 80.0
BolC1t05536H Brassica oleracea HOM05D002238 ORTHO05D001984 7.8e-33 143.7 89 83.1
CARHR082460 Cardamine hirsuta HOM05D002238 ORTHO05D001984 7.8e-33 143.7 91 83.5
Eucgr.G02573 Eucalyptus grandis HOM05D002238 ORTHO05D001984 7.8e-33 143.7 95 78.9
Phvul.008G288600 Phaseolus vulgaris HOM05D002238 ORTHO05D001984 7.8e-33 143.7 97 77.3
BraA01t04366Z Brassica rapa HOM05D002238 ORTHO05D001984 1.0e-32 143.3 89 83.1
Peaxi162Scf00065g01518 Petunia axillaris HOM05D002238 ORTHO05D001984 1.0e-32 143.3 95 80.0
AL3G19110 Arabidopsis lyrata HOM05D002238 ORTHO05D001984 1.3e-32 142.9 91 82.4
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.7e-32 142.5 97 77.3
Sed0013246 Sechium edule HOM05D002238 ORTHO05D001984 1.7e-32 142.5 95 76.8
Aa31LG5G18320 Aethionema arabicum HOM05D002238 ORTHO05D001984 2.3e-32 142.1 91 83.5
AUR62023617 Chenopodium quinoa HOM05D002238 ORTHO05D001984 2.3e-32 142.1 95 76.8
TPR.G24144 Trifolium pratense HOM05D002238 ORTHO05D001984 2.3e-32 142.1 97 76.3
MBI16_g14386_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 3.0e-32 141.7 97 74.2
MBI16_g20582_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 3.0e-32 141.7 97 74.2
MELO3C008154.2 Cucumis melo HOM05D002238 ORTHO05D001984 5.1e-32 141.0 95 76.8
CsaV3_1G001380 Cucumis sativus L. HOM05D002238 ORTHO05D001984 5.1e-32 141.0 95 77.9
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 6.6e-32 140.6 95 74.7
FAN02G1526 Fragaria x ananassa HOM05D002238 ORTHO05D001984 6.6e-32 140.6 94 77.7
FAN09G1531 Fragaria x ananassa HOM05D002238 ORTHO05D001984 6.6e-32 140.6 94 77.7
Lalb_Chr10g0095971 Lupinus albus HOM05D002238 ORTHO05D001984 6.6e-32 140.6 95 75.8
AUR62029701 Chenopodium quinoa HOM05D002238 ORTHO05D001984 8.7e-32 140.2 97 74.2
MBI07_g09667_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 8.7e-32 140.2 97 74.2
RcHm_v2.0_Chr2g0156191 Rosa chinensis HOM05D002238 ORTHO05D001984 8.7e-32 140.2 95 76.8
Sc04g0009070 Simmondsia chinensis HOM05D002238 ORTHO05D001984 8.7e-32 140.2 95 76.8
BcaB04g21272 Brassica carinata HOM05D002238 ORTHO05D001984 1.1e-31 139.8 89 80.9
Lj5g0021748 Lotus japonicus HOM05D002238 ORTHO05D001984 1.1e-31 139.8 97 76.3
Nitab4.5_0001816g0140 Nicotiana tabacum HOM05D002238 ORTHO05D001984 1.1e-31 139.8 95 75.8
Manes.03G101000 Manihot esculenta HOM05D002238 ORTHO05D001984 1.9e-31 139.0 95 75.8
SalBow4G2450 Salvia bowleyana HOM05D002238 ORTHO05D001984 1.9e-31 139.0 94 79.8
Ah.08g209290 Amaranthus hybridus HOM05D002238 ORTHO05D001984 2.5e-31 138.7 97 75.3
EL10Ac1g00031 Beta vulgaris HOM05D002238 ORTHO05D001984 3.3e-31 138.3 97 73.2
Nitab4.5_0001265g0080 Nicotiana tabacum HOM05D002238 ORTHO05D001984 3.3e-31 138.3 95 74.7
FAN05G0939 Fragaria x ananassa HOM05D002238 ORTHO05D001984 4.3e-31 137.9 94 75.5
FvH4_6g40740 Fragaria vesca HOM05D002238 ORTHO05D001984 5.6e-31 137.5 94 74.5
FAN14G0117 Fragaria x ananassa HOM05D002238 ORTHO05D001984 5.6e-31 137.5 94 74.5
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 9.6e-31 136.7 97 73.2
Aqoxy2G01045 Aquilegia oxysepala HOM05D002238 ORTHO05D001984 1.6e-30 136.0 97 74.2
HanXRQChr15g0466681 Helianthus annuus HOM05D002238 ORTHO05D001984 1.6e-30 136.0 97 74.2
QL02p101242 Quercus lobata HOM05D002238 ORTHO05D001984 2.1e-30 135.6 96 72.9
RcHm_v2.0_Chr4g0385201 Rosa chinensis HOM05D002238 ORTHO05D001984 2.1e-30 135.6 95 75.8
SGA_v2.0_scaffold347G49567 Striga asiatica HOM05D002238 ORTHO05D001984 2.1e-30 135.6 78 85.9
Os12g0403800 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D001984 2.8e-30 135.2 93 77.4
Aqoxy4G02593 Aquilegia oxysepala HOM05D002238 ORTHO05D001984 4.8e-30 134.4 97 73.2
Hund01750 Selenicereus undatus HOM05D002238 ORTHO05D001984 8.1e-30 133.7 97 71.1
ATR0624G131 Amborella trichopoda HOM05D002238 ORTHO05D001984 1.4e-29 132.9 97 70.1
C05p59570 Brassica napus HOM05D002238 ORTHO05D001984 6.9e-29 130.6 81 82.7
ECA236G2666 Erigeron canadensis HOM05D002238 ORTHO05D001984 2.6e-28 128.6 91 75.8
SEGI_02051 Sequoiadendron giganteum HOM05D002238 ORTHO05D001984 3.4e-28 128.3 91 73.6
CDE05G0385 Ceratophyllum demersum HOM05D002238 ORTHO05D001984 1.3e-27 126.3 96 65.6
Mapoly0032s0043 Marchantia polymorpha HOM05D002238 ORTHO05D001984 2.2e-27 125.6 97 64.9
Rhsim01G0212800 Rhododendron simsii HOM05D002238 ORTHO05D001984 6.4e-27 124.0 75 82.7
SalBow1G1877 Salvia bowleyana HOM05D002238 ORTHO05D001984 1.9e-26 122.5 77 80.5
VMungo0647G0871 Vigna mungo HOM05D000829 ORTHO05D001984 1.9e-26 122.5 79 75.9
AUR62006368 Chenopodium quinoa HOM05D002238 ORTHO05D001984 7.1e-26 120.6 81 76.5
CDE05G1607 Ceratophyllum demersum HOM05D002238 ORTHO05D001984 1.3e-24 116.3 87 67.8
SHI10149 Sapria himalayana HOM05D002238 ORTHO05D001984 1.7e-24 115.9 83 66.3
MBI07_g04746_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 2.3e-24 115.5 72 75.0
unitig_52.g17116 Utricularia gibba HOM05D002238 ORTHO05D001984 2.5e-23 112.1 78 70.5
SMO141G0199 Selaginella moellendorffii HOM05D002238 ORTHO05D001984 2.1e-22 109.0 90 61.1
Pp3c22_2380 Physcomitrium patens HOM05D002238 ORTHO05D001984 8.1e-22 107.1 94 57.4
Sed0014080 Sechium edule HOM05D002238 ORTHO05D001984 1.4e-21 106.3 70 71.4
SGA_v2.0_scaffold391G50648 Striga asiatica HOM05D002238 ORTHO05D001984 1.2e-20 103.2 56 87.5
BolC5t34612H Brassica oleracea HOM05D002238 ORTHO05D001984 3.2e-18 95.1 62 79.0
Actinidia27651 Actinidia chinensis HOM05D002238 ORTHO05D001984 3.5e-17 91.7 57 82.5
SGA_v2.0_scaffold7G04028 Striga asiatica HOM05D002238 ORTHO05D001984 7.9e-17 90.5 94 59.6
SalBow1G0040 Salvia bowleyana HOM05D002238 ORTHO05D001984 1.3e-16 89.7 51 86.3
QL02p101294 Quercus lobata HOM05D002238 ORTHO05D001984 2.3e-16 89.0 91 53.8
Eucgr.G01770 Eucalyptus grandis HOM05D002238 ORTHO05D001984 3.1e-13 78.6 52 75.0
QL02p101482 Quercus lobata HOM05D002238 ORTHO05D001984 1.3e-08 63.2 45 68.9
SGA_v2.0_scaffold63G21756 Striga asiatica HOM05D002238 ORTHO05D001984 3.0e-08 62.0 32 87.5
Cre03.g188200 Chlamydomonas reinhardtii HOM05D002238 ORTHO05D001984 6.7e-08 60.8 87 35.6
Glyma.14G004366 Glycine max HOM05D002238 ORTHO05D001984 2.5e-07 58.9 68 45.6


User provided reference genes

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