Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 4.4e-297 1023.8 514 100.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 4.2e-255 884.4 514 85.4
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 5.1e-245 850.9 515 82.7
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 2.1e-243 845.5 527 80.3
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 2.4e-242 842.0 514 81.9
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 4.5e-241 837.8 528 79.2
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.3e-240 836.3 527 80.3
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 6.5e-240 833.9 514 80.2
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 5.1e-237 824.3 514 80.2
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 8.7e-237 823.5 527 77.6
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 8.7e-237 823.5 527 77.6
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.3e-235 819.7 514 78.6
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.3e-235 819.7 504 81.7
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 3.7e-235 818.1 528 78.6
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 4.8e-235 817.8 527 78.0
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 6.9e-234 813.9 486 84.8
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 4.5e-233 811.2 514 79.4
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 5.0e-232 807.7 527 77.4
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 1.1e-231 806.6 514 77.8
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 1.6e-230 802.7 516 76.6
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 3.6e-230 801.6 525 76.6
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 4.6e-230 801.2 518 78.2
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 1.8e-229 799.3 527 75.7
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 5.1e-229 797.7 515 76.9
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 3.3e-228 795.0 512 76.6
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 5.7e-228 794.3 514 76.8
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.7e-227 792.7 517 77.4
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 2.8e-227 792.0 512 77.3
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 6.3e-227 790.8 514 77.0
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 8.2e-227 790.4 515 75.3
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 1.4e-226 789.6 517 76.6
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 1.4e-226 789.6 512 77.5
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.8e-226 789.3 517 76.4
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 9.1e-226 786.9 527 74.6
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 1.2e-225 786.6 514 76.5
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 1.2e-225 786.6 512 77.0
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 4.5e-225 784.6 514 76.8
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 7.7e-225 783.9 520 74.6
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 1.7e-224 782.7 557 71.1
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 5.0e-224 781.2 507 75.9
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 2.5e-223 778.9 516 74.8
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 2.5e-223 778.9 527 75.0
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 3.2e-223 778.5 514 75.5
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 1.2e-222 776.5 525 74.1
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 4.7e-222 774.6 514 74.5
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 3.0e-221 771.9 533 71.1
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 5.1e-221 771.2 529 72.8
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 2.6e-220 768.8 567 69.7
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 1.8e-218 762.7 516 72.9
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 4.1e-218 761.5 528 72.9
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 1.5e-217 759.6 516 72.7
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 2.0e-217 759.2 546 71.6
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 2.6e-217 758.8 515 72.8
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 4.5e-217 758.1 504 74.8
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 2.9e-216 755.4 530 71.9
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 2.9e-216 755.4 530 73.6
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.2e-214 750.0 512 71.5
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 1.6e-214 749.6 538 69.7
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 3.6e-214 748.4 518 71.8
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 3.0e-213 745.3 504 74.0
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.0e-212 742.7 512 71.3
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 4.1e-210 734.9 515 70.7
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 3.8e-208 728.4 468 78.0
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 7.2e-207 724.2 515 70.5
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.6e-206 723.0 514 69.6
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 2.3e-205 719.2 517 71.6
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.1e-202 710.3 516 69.2
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 1.1e-202 710.3 514 68.7
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.5e-201 704.9 516 68.0
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.0e-200 703.7 516 68.6
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 5.0e-200 701.4 503 70.6
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 2.5e-199 699.1 516 67.8
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 3.2e-199 698.7 535 66.7
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 7.2e-199 697.6 516 67.6
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 9.4e-199 697.2 516 67.6
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 9.4e-199 697.2 506 70.8
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 6.1e-198 694.5 516 67.4
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.3e-197 692.6 516 68.0
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.2e-196 690.3 509 68.4
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 3.4e-196 688.7 506 68.4
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 4.8e-195 684.9 516 66.1
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 8.3e-195 684.1 536 65.1
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 7.0e-194 681.0 515 66.0
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 9.1e-194 680.6 526 65.2
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 9.1e-194 680.6 514 70.2
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.2e-193 680.2 513 66.3
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.0e-193 679.5 526 65.4
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.3e-192 676.8 431 79.4
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 8.6e-192 674.1 514 65.6
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.5e-191 673.3 514 68.3
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.8e-190 669.1 518 66.4
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 6.1e-190 667.9 524 63.9
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 4.0e-189 665.2 537 63.5
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 5.2e-189 664.8 512 67.2
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 6.8e-189 664.5 513 64.9
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.8e-186 656.4 527 63.8
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 2.3e-184 649.4 527 64.7
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 4.3e-183 645.2 528 63.6
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 2.8e-182 642.5 528 63.3
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 3.6e-182 642.1 528 63.4
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 3.6e-182 642.1 528 63.6
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.5e-180 636.7 442 73.3
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 1.7e-179 633.3 514 62.5
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 9.2e-178 627.5 517 60.7
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 6.0e-177 624.8 514 61.7
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 3.6e-174 615.5 515 62.3
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.0e-164 583.2 442 66.3
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 7.1e-162 574.7 446 66.6
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 7.8e-161 571.2 497 60.8
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 6.2e-158 561.6 355 78.3
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 1.2e-137 494.2 452 58.4
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 1.9e-130 470.3 398 60.6
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 3.0e-128 463.0 392 58.7
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 3.0e-128 463.0 532 47.9
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 7.4e-127 458.4 513 48.0
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 1.5e-119 434.1 501 45.1
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 1.4e-114 417.5 470 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 3.5e-100 369.8 476 45.0
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 3.6e-65 253.4 437 40.0
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 6.2e-65 252.7 139 88.5
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 3.4e-47 193.7 123 77.2
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.7e-38 164.9 137 66.4
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 3.2e-29 134.0 289 34.9
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.9e-27 127.1 79 74.7
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 1.8e-24 118.2 78 70.5
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 4.5e-23 113.6 73 72.6
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 4.9e-22 110.2 72 76.4
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-21 107.8 143 38.5
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 3.2e-21 107.5 104 56.7
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 7.9e-20 102.8 97 54.6
Actinidia18430 Actinidia chinensis HOM05D020173 ORTHO05D007020 3.8e-14 84.0 72 56.9
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 1.9e-13 81.6 240 27.9
Actinidia18436 Actinidia chinensis HOM05D005650 ORTHO05D007020 2.5e-13 81.3 88 51.1
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 6.0e-12 76.6 124 41.1
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-10 69.7 53 54.7
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 6.9e-08 63.2 46 69.6
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 2.6e-07 61.2 137 31.4


User provided reference genes

Program Settings