Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25646 Davidia involucrata HOM05D000350 ORTHO05D000228 6.2e-94 347.4 174 100.0
Atru.chr6.2597 Acer truncatum HOM05D000350 ORTHO05D000228 2.3e-48 196.1 140 79.3
Duzib187G1441 Durio zibethinus HOM05D000350 ORTHO05D000228 2.0e-47 193.0 142 80.3
Cfa007207 Carpinus fangiana HOM05D000350 ORTHO05D000228 4.4e-47 191.8 138 78.3
Haze_14898 Corylus avellana HOM05D000350 ORTHO05D000228 4.4e-47 191.8 144 78.5
Thecc.04G040300 Theobroma cacao HOM05D000350 ORTHO05D000228 3.7e-46 188.7 145 77.2
CiPaw.04G039400 Carya illinoinensis HOM05D000350 ORTHO05D000228 4.8e-46 188.3 138 75.4
COL.COLO4_13292 Corchorus olitorius HOM05D000350 ORTHO05D000228 4.8e-46 188.3 149 77.9
CANSAT64G1794 Cannabis sativa HOM05D000350 ORTHO05D000228 1.8e-45 186.4 157 71.3
Duzib147G0245 Durio zibethinus HOM05D000350 ORTHO05D000228 9.1e-45 184.1 141 78.0
Prupe.3G308700 Prunus persica HOM05D000350 ORTHO05D000228 9.1e-45 184.1 146 73.3
Duzib264G0804 Durio zibethinus HOM05D000350 ORTHO05D000228 1.6e-44 183.3 138 75.4
QL02p070859 Quercus lobata HOM05D000350 ORTHO05D000228 1.6e-44 183.3 157 70.1
CiPaw.03G058100 Carya illinoinensis HOM05D000350 ORTHO05D000228 7.7e-44 181.0 140 77.9
Oeu035242.1 Olea europaea HOM05D000350 ORTHO05D000228 7.7e-44 181.0 139 70.5
Hma1.2p1_1184F.1_g264850 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 1.0e-43 180.6 141 74.5
CSS0049039 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 2.9e-43 179.1 153 73.9
Gohir.D04G075200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.9e-43 179.1 142 73.9
Gorai.012G084600 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.9e-43 179.1 142 73.9
Oeu062525.1 Olea europaea HOM05D000350 ORTHO05D000228 2.9e-43 179.1 135 72.6
Lj1g0021676 Lotus japonicus HOM05D000350 ORTHO05D000228 5.0e-43 178.3 153 70.6
Potri.001G327100 Populus trichocarpa HOM05D000350 ORTHO05D000228 8.5e-43 177.6 144 74.3
Gohir.A05G336700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.1e-42 177.2 142 73.9
Gohir.A07G230200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 5.5e-42 174.9 149 71.8
MD17G1002500 Malus domestica HOM05D000350 ORTHO05D000228 9.4e-42 174.1 152 71.7
Gorai.001G273300 Gossypium raimondii HOM05D000350 ORTHO05D000228 1.6e-41 173.3 145 73.1
TWI34G0775 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 2.7e-41 172.6 150 67.3
TWI34G1853 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 2.7e-41 172.6 150 67.3
MD09G1008300 Malus domestica HOM05D000350 ORTHO05D000228 3.6e-41 172.2 153 71.9
VMungo1383G3709 Vigna mungo HOM05D000350 ORTHO05D000228 3.6e-41 172.2 145 73.1
Ciclev10015977m.g Citrus clementina HOM05D000350 ORTHO05D000228 4.7e-41 171.8 154 68.8
Gohir.A10G071300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.7e-41 171.8 150 70.7
Gohir.D10G079800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.7e-41 171.8 149 69.1
Gorai.011G086900 Gossypium raimondii HOM05D000350 ORTHO05D000228 8.0e-41 171.0 149 69.1
Gorai.006G043800 Gossypium raimondii HOM05D000350 ORTHO05D000228 1.0e-40 170.6 135 73.3
Sabra16G0209500 Salix brachista HOM05D000350 ORTHO05D000228 1.0e-40 170.6 181 58.6
TWI32G0247 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.0e-40 170.6 151 66.9
Phvul.001G089100 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 1.4e-40 170.2 144 72.9
Gohir.D09G038300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.3e-40 169.5 135 73.3
CSS0002855 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 8.8e-40 167.5 149 69.8
RcHm_v2.0_Chr2g0175971 Rosa chinensis HOM05D000350 ORTHO05D000228 8.8e-40 167.5 154 69.5
Cpa.g.sc70.118 Carica papaya HOM05D000350 ORTHO05D000228 1.2e-39 167.2 159 67.3
Gohir.A09G037265 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.0e-39 166.4 135 71.9
FAN02G1392 Fragaria x ananassa HOM05D000350 ORTHO05D000228 3.3e-39 165.6 162 66.7
FAN14G4523 Fragaria x ananassa HOM05D000350 ORTHO05D000228 4.4e-39 165.2 156 69.9
Manes.04G088500 Manihot esculenta HOM05D000350 ORTHO05D000228 4.4e-39 165.2 147 68.7
Actinidia05888 Actinidia chinensis HOM05D000350 ORTHO05D000228 5.7e-39 164.9 141 69.5
FAN05G4127 Fragaria x ananassa HOM05D000350 ORTHO05D000228 7.5e-39 164.5 158 69.0
TWI60G1078 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.3e-38 163.7 159 62.3
FAN09G2515 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.7e-38 163.3 155 67.7
FvH4_6g53830 Fragaria vesca HOM05D000350 ORTHO05D000228 3.7e-38 162.2 156 69.2
Potri.017G068748 Populus trichocarpa HOM05D000350 ORTHO05D000228 3.7e-38 162.2 141 66.0
Lalb_Chr00c01g0403801 Lupinus albus HOM05D000350 ORTHO05D000228 6.3e-38 161.4 160 63.8
Rhsim10G0004700 Rhododendron simsii HOM05D000350 ORTHO05D000228 8.2e-38 161.0 136 69.1
Glyma.19G095300 Glycine max HOM05D000350 ORTHO05D000228 1.4e-37 160.2 153 67.3
TAR622G0201 Trochodendron aralioides HOM05D000350 ORTHO05D000228 4.1e-37 158.7 144 69.4
Cc07_g01000 Coffea canephora HOM05D000350 ORTHO05D000228 7.0e-37 157.9 131 70.2
Lsat_1_v5_gn_2_94320 Lactuca sativa HOM05D000350 ORTHO05D000228 1.2e-36 157.1 123 69.9
TAR374G0904 Trochodendron aralioides HOM05D000350 ORTHO05D000228 2.9e-35 152.5 143 64.3
CsaV3_3G026870 Cucumis sativus L. HOM05D000350 ORTHO05D000228 3.8e-35 152.1 134 61.9
ClCG05G013720 Citrullus lanatus HOM05D000350 ORTHO05D000228 5.0e-35 151.8 142 63.4
MELO3C014903.2 Cucumis melo HOM05D000350 ORTHO05D000228 6.5e-35 151.4 134 61.2
Nn4g22245 Nelumbo nucifera HOM05D000350 ORTHO05D000228 6.5e-35 151.4 143 62.9
Glyma.16G053900 Glycine max HOM05D000350 ORTHO05D000228 1.1e-34 150.6 166 62.0
TAR629G0902 Trochodendron aralioides HOM05D000350 ORTHO05D000228 9.4e-34 147.5 144 62.5
Sed0024351 Sechium edule HOM05D000350 ORTHO05D000228 1.2e-33 147.1 140 62.9
Nn3g16385 Nelumbo nucifera HOM05D000350 ORTHO05D000228 2.1e-33 146.4 153 60.8
vmacro18359 Vaccinium macrocarpon HOM05D000350 ORTHO05D000228 2.7e-33 146.0 143 65.0
Dinv33322 Davidia involucrata HOM05D000350 ORTHO05D000228 4.7e-33 145.2 162 54.9
Manes.11G083000 Manihot esculenta HOM05D000350 ORTHO05D000228 6.1e-33 144.8 104 73.1
Lalb_Chr22g0360271 Lupinus albus HOM05D000350 ORTHO05D000228 8.0e-33 144.4 143 64.3
HanXRQChr09g0256441 Helianthus annuus HOM05D000350 ORTHO05D000228 5.2e-32 141.7 140 62.1
CAN.G473.122 Capsicum annuum HOM05D000350 ORTHO05D000228 1.2e-31 140.6 145 57.2
Lj7P611T37 Lonicera japonica HOM05D000350 ORTHO05D000228 5.7e-31 138.3 102 70.6
Sed0020156 Sechium edule HOM05D000350 ORTHO05D000228 5.7e-31 138.3 135 60.0
Rhsim08G0041600 Rhododendron simsii HOM05D000350 ORTHO05D000228 4.8e-30 135.2 147 59.2
DCAR_014495 Daucus carota HOM05D000350 ORTHO05D000228 6.3e-30 134.8 134 61.9
ECA238G1950 Erigeron canadensis HOM05D000350 ORTHO05D000228 2.4e-29 132.9 143 58.0
CAN.G1525.3 Capsicum annuum HOM05D000350 ORTHO05D000228 4.1e-29 132.1 141 58.2
Nitab4.5_0003376g0090 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.2e-28 130.6 148 58.8
Nitab4.5_0007375g0060 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.2e-28 130.6 145 59.3
TAR371G0550 Trochodendron aralioides HOM05D000918 ORTHO05D000228 5.9e-28 128.3 148 58.1
PSO017G0744 Papaver somniferum HOM05D000350 ORTHO05D000228 1.0e-27 127.5 127 59.1
Peaxi162Scf00420g00064 Petunia axillaris HOM05D000350 ORTHO05D000228 1.0e-27 127.5 143 55.9
PGSC0003DMG400040232 Solanum tuberosum HOM05D000350 ORTHO05D000228 3.8e-27 125.6 146 61.0
Solyc02g068200.1 Solanum lycopersicum HOM05D000350 ORTHO05D000228 1.9e-26 123.2 142 61.3
Aqoxy3G01633 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 2.5e-26 122.9 145 57.9
CiPaw.05G106400 Carya illinoinensis HOM05D000350 ORTHO05D000228 4.2e-26 122.1 145 49.7
PSO478G4219 Papaver somniferum HOM05D000350 ORTHO05D000228 5.5e-26 121.7 126 55.6
Cfa009393 Carpinus fangiana HOM05D000350 ORTHO05D000228 7.2e-26 121.3 141 48.2
Haze_12453 Corylus avellana HOM05D000350 ORTHO05D000228 9.5e-26 120.9 141 48.2
arahy.Tifrunner.gnm1.ann1.KNN8RN Arachis hypogaea HOM05D000350 ORTHO05D000228 1.2e-25 120.6 163 49.7
arahy.Tifrunner.gnm1.ann1.XF5UIG Arachis hypogaea HOM05D000350 ORTHO05D000228 1.2e-25 120.6 163 49.7
CiPaw.06G105800 Carya illinoinensis HOM05D000350 ORTHO05D000228 1.6e-25 120.2 139 48.9
Psat3g162880 Pisum sativum HOM05D000350 ORTHO05D000228 1.6e-25 120.2 132 59.1
Ca_26316_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 2.1e-25 119.8 153 60.1
TPR.G8574 Trifolium pratense HOM05D000350 ORTHO05D000228 8.0e-25 117.9 130 55.4
Medtr7g028160 Medicago truncatula HOM05D000350 ORTHO05D000228 3.0e-24 115.9 133 54.9
PSO017G7103 Papaver somniferum HOM05D000350 ORTHO05D000228 3.0e-24 115.9 103 61.2
QL03p051355 Quercus lobata HOM05D000350 ORTHO05D000228 4.0e-24 115.5 118 51.7
PSO478G3234 Papaver somniferum HOM05D000350 ORTHO05D000228 6.8e-24 114.8 101 61.4
Sopen02g017300 Solanum pennellii HOM05D000350 ORTHO05D000228 6.8e-24 114.8 145 60.7
Nitab4.5_0011381g0030 Nicotiana tabacum HOM05D000350 ORTHO05D000228 2.6e-23 112.8 147 57.1
Sc03g0006340 Simmondsia chinensis HOM05D000350 ORTHO05D000228 3.4e-23 112.5 125 57.6
ATR0582G195 Amborella trichopoda HOM05D000350 ORTHO05D000228 7.5e-23 111.3 132 48.5
Manes.12G007700 Manihot esculenta HOM05D000350 ORTHO05D000228 3.7e-22 109.0 142 51.4
Potri.003G167900 Populus trichocarpa HOM05D000350 ORTHO05D000228 2.4e-21 106.3 129 49.6
Carub.0005s0520 Capsella rubella HOM05D000350 ORTHO05D000228 4.1e-21 105.5 153 44.4
Manes.13G008300 Manihot esculenta HOM05D000350 ORTHO05D000228 7.0e-21 104.8 118 51.7
Potri.001G060000 Populus trichocarpa HOM05D000350 ORTHO05D000228 1.6e-20 103.6 144 45.8
AL5G16030 Arabidopsis lyrata HOM05D000350 ORTHO05D000228 2.7e-20 102.8 153 49.0
Ciclev10032374m.g Citrus clementina HOM05D000350 ORTHO05D000228 4.5e-20 102.1 148 45.3
Thecc.02G200900 Theobroma cacao HOM05D000350 ORTHO05D000228 1.3e-19 100.5 143 45.5
Sabra01G0043000 Salix brachista HOM05D000350 ORTHO05D000228 2.3e-19 99.8 144 46.5
Actinidia36216 Actinidia chinensis HOM05D000350 ORTHO05D000228 2.9e-19 99.4 151 49.0
Aa31LG2G5580 Aethionema arabicum HOM05D000350 ORTHO05D000228 5.0e-19 98.6 100 58.0
ECA232G2119 Erigeron canadensis HOM05D000350 ORTHO05D000228 5.0e-19 98.6 153 50.3
Aqoxy5G03265 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 6.6e-19 98.2 108 55.6
unitig_0.g1937 Utricularia gibba HOM05D000350 ORTHO05D000228 1.9e-18 96.7 126 53.2
HPP92_006995 Vanilla planifolia HOM05D000350 ORTHO05D000228 2.5e-18 96.3 130 47.7
AT3G27010 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 3.3e-18 95.9 134 51.5
CANSAT01G0916 Cannabis sativa HOM05D000350 ORTHO05D000228 3.3e-18 95.9 107 48.6
THA.LOC104805322 Tarenaya hassleriana HOM05D000350 ORTHO05D015477 3.3e-18 95.9 147 46.3
PGSC0003DMG400020247 Solanum tuberosum HOM05D000350 ORTHO05D000228 4.3e-18 95.5 119 53.8
Prupe.1G222000 Prunus persica HOM05D000350 ORTHO05D000228 5.6e-18 95.1 104 52.9
Lj6P831T22 Lonicera japonica HOM05D000350 ORTHO05D000228 9.5e-18 94.4 135 42.2
THA.LOC104825633 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 2.1e-17 93.2 115 50.4
Sp2g16130 Schrenkiella parvula HOM05D000350 ORTHO05D000228 6.1e-17 91.7 111 49.5
CDE02G4659 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 1.4e-16 90.5 80 57.5
HanXRQChr07g0198131 Helianthus annuus HOM05D000350 ORTHO05D000228 1.4e-16 90.5 137 48.2
Eucgr.B03529 Eucalyptus grandis HOM05D000350 ORTHO05D000228 1.8e-16 90.1 115 47.0
Thhalv10004391m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 1.8e-16 90.1 110 45.5
Sopen02g038930 Solanum pennellii HOM05D000350 ORTHO05D000228 2.3e-16 89.7 132 50.8
HPP92_000343 Vanilla planifolia HOM05D000350 ORTHO05D000228 4.0e-16 89.0 129 44.2
Gohir.A12G141100 Gossypium hirsutum HOM05D000350 ORTHO05D000228 6.8e-16 88.2 142 42.3
Duzib052G0017 Durio zibethinus HOM05D000350 ORTHO05D000228 8.9e-16 87.8 119 42.9
Gohir.D12G146000 Gossypium hirsutum HOM05D000350 ORTHO05D000228 8.9e-16 87.8 142 42.3
Gorai.008G157300 Gossypium raimondii HOM05D000350 ORTHO05D000228 8.9e-16 87.8 142 42.3
Nitab4.5_0000519g0050 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.5e-15 87.0 89 58.4
MD13G1122900 Malus domestica HOM05D000350 ORTHO05D000228 2.6e-15 86.3 105 49.5
THA.LOC104823985 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 2.6e-15 86.3 152 46.1
C07p36110 Brassica napus HOM05D000350 ORTHO05D000228 3.4e-15 85.9 136 42.6
EL10Ac6g15439 Beta vulgaris HOM05D000350 ORTHO05D000228 7.5e-15 84.7 129 44.2
BcaC06g33868 Brassica carinata HOM05D000350 ORTHO05D000228 7.5e-15 84.7 136 42.6
Migut.F00047 Erythranthe guttata HOM05D000350 ORTHO05D000228 7.5e-15 84.7 160 48.8
Rhsim12G0023400 Rhododendron simsii HOM05D000350 ORTHO05D000228 9.8e-15 84.3 118 47.5
BcaC06g31027 Brassica carinata HOM05D000350 ORTHO05D000228 1.3e-14 84.0 151 40.4
BolC7t44125H Brassica oleracea HOM05D000350 ORTHO05D000228 2.2e-14 83.2 135 42.2
CDE05G0377 Ceratophyllum demersum HOM05D000482 ORTHO05D000349 4.9e-14 82.0 104 46.2
MBI11_g24606_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 6.4e-14 81.6 138 42.0
A06p41550 Brassica napus HOM05D000350 ORTHO05D000228 1.1e-13 80.9 112 46.4
BraA06t27080Z Brassica rapa HOM05D000350 ORTHO05D000228 1.1e-13 80.9 112 46.4
TWI36G0943 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 5.4e-13 78.6 141 40.4
ClCG06G001980 Citrullus lanatus HOM05D000350 ORTHO05D000228 9.2e-13 77.8 142 38.7
CsaV3_6G008050 Cucumis sativus L. HOM05D000350 ORTHO05D000228 9.2e-13 77.8 141 38.3
CARHR148200 Cardamine hirsuta HOM05D000350 ORTHO05D000228 2.0e-12 76.6 110 47.3
CDE05G1510 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 4.6e-12 75.5 92 45.7
BcaB07g30197 Brassica carinata HOM05D000350 ORTHO05D015477 6.0e-12 75.1 88 50.0
MELO3C022331.2 Cucumis melo HOM05D000350 ORTHO05D000228 6.0e-12 75.1 141 37.6
HPP92_025269 Vanilla planifolia HOM05D000350 ORTHO05D000228 7.8e-12 74.7 93 49.5
Cc11_g17270 Coffea canephora HOM05D000350 ORTHO05D000228 3.0e-11 72.8 116 44.0
DCAR_024657 Daucus carota HOM05D000350 ORTHO05D000228 3.0e-11 72.8 136 37.5
MSTRG.8024 Avicennia marina HOM05D000350 ORTHO05D000228 9.5e-10 67.8 140 40.7
BcaC04g23912 Brassica carinata HOM05D000350 ORTHO05D000228 1.2e-09 67.4 96 45.8
Oeu058911.1 Olea europaea HOM05D000350 ORTHO05D000228 2.1e-09 66.6 138 35.5
C02p53640 Brassica napus HOM05D013494 ORTHO05D015477 2.8e-09 66.2 96 50.0
C09p03440 Brassica napus HOM05D000350 ORTHO05D000228 8.0e-09 64.7 58 56.9
Zm00001eb364110 Zea mays HOM05D000350 ORTHO05D000228 8.0e-09 64.7 122 40.2
Atru.chr11.2373 Acer truncatum HOM05D000350 ORTHO05D000228 1.8e-08 63.5 107 39.3
CDE06G2622 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 1.8e-08 63.5 56 60.7
Zm00001eb142960 Zea mays HOM05D000350 ORTHO05D000228 3.1e-08 62.8 115 40.9
PGR083G1592 Punica granatum HOM05D000350 ORTHO05D000228 6.8e-08 61.6 146 39.7
BolC9t53265H Brassica oleracea HOM05D000350 ORTHO05D000228 1.5e-07 60.5 53 60.4
SGA_v2.0_scaffold253G45181 Striga asiatica HOM05D000350 ORTHO05D000228 2.6e-07 59.7 88 44.3
Ah.11g045530 Amaranthus hybridus HOM05D000350 ORTHO05D000228 5.8e-07 58.5 103 41.7
A09p03240 Brassica napus HOM05D000350 ORTHO05D000228 5.8e-07 58.5 62 53.2
BraA09t35962Z Brassica rapa HOM05D000350 ORTHO05D000228 5.8e-07 58.5 62 53.2
PGR102G0616 Punica granatum HOM05D000350 ORTHO05D000228 9.8e-07 57.8 133 33.8
CDE05G0962 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 1.7e-06 57.0 50 60.0
BraA02t08504Z Brassica rapa HOM05D013494 ORTHO05D015477 2.2e-06 56.6 58 50.0
BolC2t11432H Brassica oleracea HOM05D013494 ORTHO05D015477 2.9e-06 56.2 82 43.9
AUR62029577 Chenopodium quinoa HOM05D000350 ORTHO05D000228 6.4e-06 55.1 111 38.7
Sc04g0000520 Simmondsia chinensis HOM05D000350 ORTHO05D000228 8.3e-06 54.7 91 47.3


User provided reference genes

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