Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 2.7e-261 904.8 462 100.0
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 5.1e-252 874.0 464 97.0
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 9.0e-233 810.1 466 89.5
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 9.0e-233 810.1 468 89.1
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 2.1e-226 788.9 462 87.7
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 3.4e-224 781.6 445 88.3
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 5.8e-224 780.8 430 90.0
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 1.3e-223 779.6 465 86.2
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 1.3e-223 779.6 427 91.6
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 6.5e-223 777.3 462 86.6
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 1.1e-222 776.5 434 90.6
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 4.2e-222 774.6 462 85.5
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 5.5e-222 774.2 456 86.2
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 6.0e-221 770.8 436 89.2
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 7.9e-221 770.4 462 84.4
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 1.3e-220 769.6 427 89.5
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 1.3e-220 769.6 427 89.9
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.3e-220 769.6 437 89.5
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 1.3e-220 769.6 437 89.5
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.8e-220 769.2 437 89.5
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 2.3e-220 768.8 425 90.8
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 3.3e-219 765.0 435 89.2
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 3.3e-219 765.0 432 87.7
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 9.6e-219 763.5 427 89.7
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.3e-218 763.1 447 85.9
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 1.6e-218 762.7 427 88.5
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 3.7e-218 761.5 428 88.3
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 3.7e-218 761.5 447 85.9
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 4.8e-218 761.1 428 88.1
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 4.8e-218 761.1 446 86.5
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 4.8e-218 761.1 427 88.8
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 4.8e-218 761.1 427 89.0
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 6.3e-218 760.8 427 89.2
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 8.2e-218 760.4 427 88.8
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 1.1e-217 760.0 429 89.3
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 1.1e-217 760.0 434 88.2
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 1.8e-217 759.2 434 88.0
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 3.1e-217 758.4 429 88.3
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 5.3e-217 757.7 468 83.5
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 5.3e-217 757.7 427 88.1
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 6.9e-217 757.3 441 86.6
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.2e-216 756.5 448 85.3
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 2.0e-216 755.7 427 88.5
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 7.6e-216 753.8 427 87.8
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.0e-215 753.4 447 86.1
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.3e-215 753.1 462 83.3
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 1.7e-215 752.7 427 88.1
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 3.8e-215 751.5 427 88.3
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 3.8e-215 751.5 451 83.6
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 8.4e-215 750.4 427 88.3
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 1.4e-214 749.6 437 86.5
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 5.5e-214 747.7 449 83.3
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.6e-213 746.1 415 88.9
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 2.1e-213 745.7 421 87.6
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 2.7e-213 745.3 434 85.9
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 4.6e-213 744.6 441 85.0
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 4.6e-213 744.6 469 83.4
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 7.9e-213 743.8 487 80.5
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 7.9e-213 743.8 477 79.7
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.8e-212 742.7 427 87.1
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 1.8e-212 742.7 467 82.7
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 3.0e-212 741.9 440 85.0
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 3.0e-212 741.9 439 84.5
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 6.7e-212 740.7 492 79.1
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 8.7e-212 740.3 408 91.2
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 8.7e-212 740.3 408 91.2
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 8.7e-212 740.3 408 90.4
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 8.7e-212 740.3 429 86.0
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 1.5e-211 739.6 440 84.8
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 1.9e-211 739.2 434 85.5
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 1.9e-211 739.2 451 82.3
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 1.9e-211 739.2 440 84.8
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 2.5e-211 738.8 437 85.4
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 2.5e-211 738.8 437 85.4
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 4.3e-211 738.0 440 84.5
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 4.3e-211 738.0 437 85.4
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 4.3e-211 738.0 437 85.4
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 7.4e-211 737.3 447 85.0
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 2.2e-210 735.7 442 83.9
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 2.2e-210 735.7 428 85.3
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 6.3e-210 734.2 436 84.9
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 6.3e-210 734.2 436 84.9
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 6.3e-210 734.2 479 80.6
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 4.1e-209 731.5 436 83.9
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 6.9e-209 730.7 436 83.7
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 1.5e-208 729.6 466 81.5
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 2.0e-208 729.2 466 82.2
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 2.6e-208 728.8 441 83.7
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 2.6e-208 728.8 436 83.7
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 7.7e-208 727.2 438 84.9
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 8.5e-207 723.8 445 81.6
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 8.5e-207 723.8 437 83.8
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.4e-206 723.0 437 83.8
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 1.4e-206 723.0 419 84.0
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 2.5e-206 722.2 427 83.1
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 3.2e-206 721.8 450 82.0
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 3.0e-204 715.3 472 76.9
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 5.1e-204 714.5 391 91.0
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 4.1e-201 704.9 487 77.4
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 3.7e-194 681.8 468 77.4
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 6.3e-194 681.0 383 88.8
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 4.5e-192 674.9 383 87.7
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 1.5e-190 669.8 403 86.1
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 5.5e-190 667.9 495 72.3
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 7.2e-190 667.5 434 80.0
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 2.3e-188 662.5 457 76.8
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 3.7e-186 655.2 438 77.4
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 4.8e-186 654.8 444 75.9
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 1.8e-185 652.9 432 78.0
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 5.3e-185 651.4 426 79.1
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 1.3e-183 646.7 414 79.7
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.5e-182 643.3 447 75.4
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 4.0e-180 635.2 437 76.4
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 8.3e-178 627.5 411 75.7
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 1.6e-176 623.2 413 75.8
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 2.2e-175 619.4 438 71.9
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 5.2e-172 608.2 440 71.1
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.1e-169 599.0 463 70.6
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 7.3e-166 587.8 425 73.4
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.8e-164 583.2 595 58.3
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.5e-147 526.9 301 88.0
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.2e-144 517.3 330 79.1
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 7.8e-144 514.6 429 59.7
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 1.4e-129 467.2 411 57.4
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 2.4e-121 439.9 369 61.0
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 2.1e-120 436.8 386 59.8
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 4.2e-113 412.5 261 78.5
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.2e-112 411.0 227 89.0
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 6.9e-108 395.2 417 50.6
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.9e-105 387.1 442 51.1
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 6.9e-84 315.5 173 91.9
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.7e-80 303.5 188 83.0
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 7.9e-80 302.0 281 59.4
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 1.4e-76 291.2 409 41.3
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 6.5e-58 229.2 358 39.7
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.1e-57 228.4 173 68.2
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 2.6e-46 190.7 117 81.2
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.7e-45 188.0 425 33.4
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 8.9e-31 139.0 152 51.3
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 3.4e-30 137.1 72 90.3
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 5.4e-28 129.8 81 85.2
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 1.3e-26 125.2 68 86.8
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 4.9e-21 106.7 66 86.4
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 1.9e-20 104.8 76 72.4
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 1.9e-20 104.8 76 72.4
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 3.6e-16 90.5 61 73.8
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.8e-15 88.2 296 28.0
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 1.8e-15 88.2 59 78.0
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 5.6e-09 66.6 50 62.0
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 4.8e-08 63.5 68 51.5
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 4.8e-08 63.5 68 51.5


User provided reference genes

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