Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.8e-90 335.9 170 100.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.5e-87 325.5 170 96.5
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.6e-86 322.8 170 95.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.9e-85 318.2 166 94.6
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.2e-85 317.8 170 92.9
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 6.7e-85 317.4 170 92.4
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 8.8e-85 317.0 170 91.2
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.6e-84 315.5 168 91.1
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 5.7e-84 314.3 168 92.9
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 5.7e-84 314.3 168 93.5
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 5.7e-84 314.3 168 92.9
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 7.4e-84 313.9 168 92.3
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.3e-83 313.2 168 92.3
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.8e-83 312.0 168 91.7
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 3.7e-83 311.6 168 91.7
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.7e-83 311.6 168 91.1
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.7e-83 311.6 168 91.1
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 3.7e-83 311.6 168 92.9
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 6.3e-83 310.8 165 90.9
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 8.2e-83 310.5 167 91.0
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.1e-82 310.1 168 89.9
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.1e-82 310.1 168 89.9
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.4e-82 308.9 168 91.7
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 4.1e-82 308.1 168 91.7
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 5.3e-82 307.8 168 89.9
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 5.3e-82 307.8 168 89.9
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.6e-81 306.2 168 88.7
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.6e-81 306.2 168 88.7
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.6e-81 306.2 168 89.9
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.0e-81 305.8 168 88.1
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.6e-81 305.4 167 91.0
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 3.5e-81 305.1 166 88.6
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 4.5e-81 304.7 168 88.1
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 7.7e-81 303.9 168 88.1
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 7.7e-81 303.9 167 88.6
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 1.3e-80 303.1 171 90.1
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.9e-80 302.0 168 90.5
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.9e-80 302.0 165 89.7
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.9e-80 302.0 165 89.7
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.9e-80 302.0 165 89.7
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.9e-80 302.0 165 89.7
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.9e-80 302.0 168 88.7
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 5.0e-80 301.2 168 89.9
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.0e-80 301.2 165 89.7
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 8.5e-80 300.4 168 87.5
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.1e-79 300.1 168 86.9
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.1e-79 300.1 168 86.9
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.5e-79 299.7 168 88.1
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.5e-79 298.9 168 86.9
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.5e-79 298.9 168 86.9
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.5e-79 298.9 168 86.9
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.2e-79 298.5 168 88.7
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.2e-79 298.1 168 86.9
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 7.2e-79 297.4 165 86.7
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 7.2e-79 297.4 168 89.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 9.4e-79 297.0 168 88.7
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.2e-78 296.6 185 81.1
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 2.1e-78 295.8 165 87.3
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.1e-78 295.8 168 88.1
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 3.6e-78 295.0 165 87.3
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.6e-78 295.0 168 85.1
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 3.6e-78 295.0 168 86.9
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 8.0e-78 293.9 168 86.3
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 8.0e-78 293.9 165 86.1
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.0e-78 293.9 216 73.1
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.4e-77 293.1 206 73.8
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.8e-77 292.7 181 80.7
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.0e-77 292.0 168 86.3
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 3.0e-77 292.0 168 86.3
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.0e-77 291.6 168 85.7
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.5e-76 289.7 168 86.9
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-76 289.7 182 80.8
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.0e-76 289.3 168 85.7
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.0e-76 289.3 182 80.8
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.0e-76 289.3 182 80.8
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 4.4e-76 288.1 168 83.9
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 4.4e-76 288.1 168 84.5
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 4.4e-76 288.1 191 77.0
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.7e-76 287.7 168 85.1
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 5.7e-76 287.7 168 85.7
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.7e-76 287.0 166 85.5
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.3e-75 286.6 168 82.7
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 2.8e-75 285.4 225 68.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 4.8e-75 284.6 148 93.2
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 6.3e-75 284.3 148 94.6
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 8.2e-75 283.9 148 92.6
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.4e-74 283.1 153 94.1
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.8e-74 282.7 168 83.9
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 2.4e-74 282.3 167 79.6
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 7.0e-74 280.8 193 74.6
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 9.1e-74 280.4 168 82.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 3.5e-73 278.5 168 83.9
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.5e-73 278.1 168 81.0
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 5.9e-73 277.7 168 79.2
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 7.7e-73 277.3 168 83.3
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.0e-72 276.9 171 83.6
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.3e-72 276.6 166 80.1
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.3e-72 276.6 241 64.7
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 2.2e-72 275.8 148 90.5
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.9e-72 275.4 154 87.7
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 8.5e-72 273.9 171 83.0
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.1e-71 273.5 149 88.6
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.1e-71 273.5 166 81.9
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.9e-71 272.7 148 87.8
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.9e-71 272.7 168 82.1
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.2e-71 271.6 142 92.3
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 4.2e-71 271.6 147 89.1
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 3.6e-70 268.5 144 91.0
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 4.7e-70 268.1 168 75.0
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 6.1e-70 267.7 169 78.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.4e-69 266.5 169 76.3
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 5.2e-69 264.6 149 86.6
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 8.8e-69 263.8 176 78.4
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 2.4e-66 255.8 168 74.4
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.3e-64 250.0 148 82.4
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-63 246.9 156 81.4
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 2.5e-63 245.7 167 73.1
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 4.2e-63 245.0 169 78.7
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.0e-61 240.4 148 79.7
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.4e-61 240.0 137 85.4
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 6.8e-61 237.7 152 79.6
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 6.8e-61 237.7 125 88.0
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 8.8e-61 237.3 123 89.4
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.2e-59 232.6 124 96.8
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 3.7e-59 231.9 165 75.2
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.9e-59 231.5 125 86.4
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 9.2e-58 227.3 168 72.0
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.6e-57 226.5 124 92.7
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-56 223.4 165 72.1
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.3e-56 222.6 132 84.1
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 6.6e-56 221.1 121 90.9
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 8.6e-56 220.7 124 93.5
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 8.6e-56 220.7 121 90.1
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 8.6e-56 220.7 121 90.1
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.1e-55 220.3 155 70.3
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-55 219.5 121 89.3
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 5.6e-55 218.0 123 88.6
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 9.5e-55 217.2 192 59.4
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.2e-52 210.3 143 77.6
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 3.4e-52 208.8 147 75.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.2e-51 206.1 158 72.2
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 5.9e-49 198.0 134 70.9
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 5.8e-44 181.4 109 86.2
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 9.2e-42 174.1 89 88.8
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-41 173.3 90 93.3
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-38 162.9 94 90.4
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.9e-34 149.8 83 91.6
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.7e-32 143.3 115 65.2
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 8.9e-29 131.0 94 70.2
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.2e-28 130.6 100 65.0
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.3e-27 127.1 73 90.4
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.9e-27 125.2 77 81.8
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.4e-27 124.4 82 74.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.4e-26 123.6 103 65.0
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.6e-23 110.9 75 70.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.8e-22 109.4 74 71.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.8e-19 99.0 64 75.0
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 9.3e-18 94.4 65 73.8
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.7e-17 92.8 158 37.3
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 6.0e-17 91.7 130 40.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-15 86.3 49 89.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-15 86.3 49 89.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.3e-15 85.9 46 84.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 6.2e-14 81.6 108 50.9
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 4.0e-13 79.0 182 34.6
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.4e-10 68.6 37 78.4


User provided reference genes

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