Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25024 Davidia involucrata HOM05D004807 ORTHO05D005915 7.6e-138 493.8 245 100.0
Rhsim03G0002200 Rhododendron simsii HOM05D004807 ORTHO05D005915 7.1e-104 380.9 268 74.3
Lj1A1135G80 Lonicera japonica HOM05D004807 ORTHO05D005915 5.1e-102 374.8 257 73.9
Actinidia22073 Actinidia chinensis HOM05D004807 ORTHO05D005915 7.6e-98 360.9 262 72.5
TAR623G0137 Trochodendron aralioides HOM05D004807 ORTHO05D005915 6.1e-95 351.3 257 69.3
Manes.08G040000 Manihot esculenta HOM05D004807 ORTHO05D005915 1.4e-91 340.1 260 66.9
Aqoxy1G00442 Aquilegia oxysepala HOM05D004807 ORTHO05D005915 1.5e-90 336.7 264 64.4
vmacro12557 Vaccinium macrocarpon HOM05D004807 ORTHO05D005915 1.0e-89 334.0 265 68.7
CsaV3_3G038490 Cucumis sativus L. HOM05D004807 ORTHO05D005915 1.7e-89 333.2 260 66.5
Nn7g35896 Nelumbo nucifera HOM05D004807 ORTHO05D005915 2.9e-89 332.4 258 64.7
Atru.chr8.1221 Acer truncatum HOM05D004807 ORTHO05D005915 6.5e-89 331.3 265 65.3
GSVIVG01033428001 Vitis vinifera HOM05D004807 ORTHO05D005915 1.1e-88 330.5 257 65.8
ClCG10G017810 Citrullus lanatus HOM05D004807 ORTHO05D005915 2.5e-88 329.3 260 66.2
CiPaw.09G026200 Carya illinoinensis HOM05D004807 ORTHO05D005915 9.4e-88 327.4 261 66.7
Solyc10g080630.2 Solanum lycopersicum HOM05D004807 ORTHO05D005915 1.0e-86 323.9 261 64.4
Sopen10g031170 Solanum pennellii HOM05D004807 ORTHO05D005915 1.0e-86 323.9 261 64.4
Sed0007842 Sechium edule HOM05D004807 ORTHO05D005915 1.4e-86 323.6 260 65.0
Thecc.05G180400 Theobroma cacao HOM05D004807 ORTHO05D005915 1.4e-86 323.6 267 64.8
Lsat_1_v5_gn_2_58060 Lactuca sativa HOM05D004807 ORTHO05D005915 2.3e-86 322.8 263 63.5
Peaxi162Scf00249g00811 Petunia axillaris HOM05D004807 ORTHO05D005915 3.9e-86 322.0 261 63.6
Nitab4.5_0005684g0020 Nicotiana tabacum HOM05D004807 ORTHO05D005915 7.4e-85 317.8 263 63.9
Gorai.006G145300 Gossypium raimondii HOM05D004807 ORTHO05D005915 9.7e-85 317.4 267 62.9
Ciclev10011020m.g Citrus clementina HOM05D004807 ORTHO05D005915 1.3e-84 317.0 266 61.7
ECA238G3196 Erigeron canadensis HOM05D004807 ORTHO05D005915 2.2e-84 316.2 259 62.2
CAN.G128.57 Capsicum annuum HOM05D004807 ORTHO05D005915 2.8e-84 315.8 262 63.7
Nitab4.5_0001079g0110 Nicotiana tabacum HOM05D004807 ORTHO05D005915 3.7e-84 315.5 263 63.9
Ca_09097_v3 Cicer arietinum L. HOM05D004807 ORTHO05D005915 4.8e-84 315.1 259 63.7
SGA_v2.0_scaffold105G30514 Striga asiatica HOM05D004807 ORTHO05D005915 6.3e-84 314.7 260 64.2
Gohir.D09G126500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 1.1e-83 313.9 266 62.8
Phvul.001G200200 Phaseolus vulgaris HOM05D004807 ORTHO05D005915 1.4e-83 313.5 255 64.3
Prupe.7G085900 Prunus persica HOM05D004807 ORTHO05D005915 1.4e-83 313.5 260 63.8
Cfa020114 Carpinus fangiana HOM05D004807 ORTHO05D005915 1.8e-83 313.2 257 65.0
Potri.006G197200 Populus trichocarpa HOM05D004807 ORTHO05D005915 2.4e-83 312.8 267 59.9
Gohir.A09G130500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 9.1e-83 310.8 266 62.4
VMungo1383G3705 Vigna mungo HOM05D004807 ORTHO05D005915 9.1e-83 310.8 259 63.3
Glyma.03G206600 Glycine max HOM05D004807 ORTHO05D005915 3.4e-82 308.9 264 63.6
MD14G1049600 Malus domestica HOM05D004807 ORTHO05D005915 5.9e-82 308.1 261 62.5
Psat0s2035g0040 Pisum sativum HOM05D004807 ORTHO05D005915 5.9e-82 308.1 263 62.7
SalBow6G5976 Salvia bowleyana HOM05D004807 ORTHO05D005915 5.9e-82 308.1 263 60.5
COL.COLO4_29436 Corchorus olitorius HOM05D004807 ORTHO05D005915 1.7e-81 306.6 269 60.2
Oeu046734.3 Olea europaea HOM05D004807 ORTHO05D005915 2.2e-81 306.2 235 65.5
CANSAT64G1965 Cannabis sativa HOM05D004807 ORTHO05D005915 6.5e-81 304.7 255 63.1
arahy.Tifrunner.gnm1.ann1.4PIV4R Arachis hypogaea HOM05D004807 ORTHO05D005915 1.1e-80 303.9 259 61.0
TPR.G32304 Trifolium pratense HOM05D004807 ORTHO05D005915 1.1e-80 303.9 261 62.1
Migut.J01878 Erythranthe guttata HOM05D004807 ORTHO05D005915 4.2e-80 302.0 266 60.5
PGR142G0165 Punica granatum HOM05D004807 ORTHO05D005915 4.2e-80 302.0 250 62.0
Glyma.19G204200 Glycine max HOM05D004807 ORTHO05D005915 5.5e-80 301.6 258 64.0
TWI74G1245 Tripterygium wilfordii HOM05D004807 ORTHO05D005915 9.4e-80 300.8 252 62.7
Medtr7g107350 Medicago truncatula HOM05D004807 ORTHO05D005915 1.2e-79 300.4 261 60.2
arahy.Tifrunner.gnm1.ann1.14IR3Z Arachis hypogaea HOM05D004807 ORTHO05D005915 2.7e-79 299.3 253 61.7
EL10Ac3g06848 Beta vulgaris HOM05D004807 ORTHO05D005915 4.7e-79 298.5 286 57.3
Rhsim03G0002400 Rhododendron simsii HOM05D004807 ORTHO05D005915 4.7e-79 298.5 176 84.1
FvH4_6g21460 Fragaria vesca HOM05D004807 ORTHO05D005915 7.9e-79 297.7 261 58.6
FAN05G3467 Fragaria x ananassa HOM05D004807 ORTHO05D005915 7.9e-79 297.7 261 58.6
FAN14G4845 Fragaria x ananassa HOM05D004807 ORTHO05D005915 7.9e-79 297.7 261 58.6
Sc19g0006260 Simmondsia chinensis HOM05D004807 ORTHO05D005915 1.4e-78 297.0 261 61.3
FAN09G2962 Fragaria x ananassa HOM05D004807 ORTHO05D005915 3.0e-78 295.8 261 58.6
RcHm_v2.0_Chr3g0478641 Rosa chinensis HOM05D004807 ORTHO05D005915 3.0e-78 295.8 259 60.2
FAN02G2347 Fragaria x ananassa HOM05D004807 ORTHO05D005915 3.9e-78 295.4 261 57.9
Hund19221 Selenicereus undatus HOM05D004807 ORTHO05D005915 2.0e-77 293.1 278 56.5
Lalb_Chr25g0287671 Lupinus albus HOM05D004807 ORTHO05D005915 2.6e-77 292.7 269 58.4
HanXRQChr14g0438891 Helianthus annuus HOM05D004807 ORTHO05D005915 7.4e-77 291.2 261 58.2
Sabra06G0151700 Salix brachista HOM05D004807 ORTHO05D005915 2.8e-76 289.3 286 55.2
QL07p025555 Quercus lobata HOM05D004807 ORTHO05D005915 8.2e-76 287.7 342 50.3
PSO170G3481 Papaver somniferum HOM05D004807 ORTHO05D005915 7.7e-74 281.2 252 56.7
PSO528G0235 Papaver somniferum HOM05D004807 ORTHO05D005915 2.2e-73 279.6 252 56.3
BcaB06g25560 Brassica carinata HOM05D004807 ORTHO05D005915 9.4e-72 274.2 263 54.8
BcaC05g29309 Brassica carinata HOM05D004807 ORTHO05D005915 3.6e-71 272.3 237 58.6
CSS0022615 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 4.7e-71 271.9 152 89.5
THA.LOC104826780 Tarenaya hassleriana HOM05D004807 ORTHO05D005915 4.7e-71 271.9 266 54.1
Lj1g0016427 Lotus japonicus HOM05D004807 ORTHO05D005915 1.0e-70 270.8 261 56.7
AT3G11960 Arabidopsis thaliana HOM05D004807 ORTHO05D005915 4.0e-70 268.9 267 52.8
BraA05t22540Z Brassica rapa HOM05D004807 ORTHO05D005915 1.5e-69 266.9 245 56.3
Sp3g10180 Schrenkiella parvula HOM05D004807 ORTHO05D005915 1.5e-69 266.9 238 56.7
A05p37420 Brassica napus HOM05D004807 ORTHO05D005915 3.3e-69 265.8 245 55.9
ATR0665G460 Amborella trichopoda HOM05D004807 ORTHO05D005915 5.7e-69 265.0 260 54.6
BolC5t34266H Brassica oleracea HOM05D004807 ORTHO05D005915 5.7e-69 265.0 245 56.7
Thhalv10019900m.g Eutrema salsugineum HOM05D004807 ORTHO05D005915 3.7e-68 262.3 264 52.7
Carub.0003s1129 Capsella rubella HOM05D004807 ORTHO05D005915 6.3e-68 261.5 264 52.7
unitig_0.g511 Utricularia gibba HOM05D004807 ORTHO05D005915 8.2e-68 261.2 273 52.4
BcaB04g18703 Brassica carinata HOM05D004807 ORTHO05D005915 1.4e-67 260.4 237 56.1
BcaC01g04068 Brassica carinata HOM05D004807 ORTHO05D005915 4.1e-67 258.8 237 56.5
C05p55980 Brassica napus HOM05D004807 ORTHO05D005915 5.3e-67 258.5 245 55.1
Ah.04g153050 Amaranthus hybridus HOM05D004807 ORTHO05D005915 2.0e-66 256.5 271 53.1
C03p45390 Brassica napus HOM05D004807 ORTHO05D005915 4.5e-66 255.4 243 55.6
A03p37390 Brassica napus HOM05D004807 ORTHO05D005915 7.7e-66 254.6 273 52.0
BraA03t12900Z Brassica rapa HOM05D004807 ORTHO05D005915 1.7e-65 253.4 281 50.5
BolC3t16806H Brassica oleracea HOM05D004807 ORTHO05D005915 2.2e-65 253.1 243 55.1
Haze_20076 Corylus avellana HOM05D004807 ORTHO05D005915 6.5e-65 251.5 202 64.9
FAN05G1427 Fragaria x ananassa HOM05D004807 ORTHO05D005915 4.4e-61 238.8 203 58.6
Aa31LG3G5560 Aethionema arabicum HOM05D004807 ORTHO05D005915 2.7e-58 229.6 238 50.4
Cpa.g.sc85.17 Carica papaya HOM05D004807 ORTHO05D005915 8.6e-57 224.6 221 57.9
Pp3c24_19520 Physcomitrium patens HOM05D004807 ORTHO05D005915 1.1e-56 224.2 244 47.1
AUR62015288 Chenopodium quinoa HOM05D004807 ORTHO05D005915 8.8e-54 214.5 229 50.7
CDE05G3662 Ceratophyllum demersum HOM05D004807 ORTHO05D005915 3.1e-51 206.1 240 48.3
Zm00001eb302880 Zea mays HOM05D004807 ORTHO05D005915 4.1e-51 205.7 201 52.7
AUR62032732 Chenopodium quinoa HOM05D004807 ORTHO05D005915 5.4e-51 205.3 220 50.5
AUR62026870 Chenopodium quinoa HOM05D004807 ORTHO05D005915 1.6e-50 203.8 228 49.1
Mapoly0005s0200 Marchantia polymorpha HOM05D004807 ORTHO05D005915 2.0e-50 203.4 195 52.8
SEGI_25187 Sequoiadendron giganteum HOM05D004807 ORTHO05D005915 1.3e-49 200.7 209 50.7
Os07g0203700 Oryza sativa ssp. japonica HOM05D004807 ORTHO05D005915 6.6e-49 198.4 233 46.8
SMO276G0043 Selaginella moellendorffii HOM05D004807 ORTHO05D005915 6.6e-49 198.4 254 45.7
AagrBONN_evm.TU.Sc2ySwM_228.688 Anthoceros agrestis HOM05D004807 ORTHO05D005915 1.9e-48 196.8 216 48.6
DCAR_017047 Daucus carota HOM05D004807 ORTHO05D005915 3.6e-47 192.6 262 45.8
MSTRG.19928 Avicennia marina HOM05D004807 ORTHO05D005915 6.6e-41 171.8 155 57.4
FAN14G5853 Fragaria x ananassa HOM05D004807 ORTHO05D005915 3.6e-39 166.0 183 49.7
Eucgr.K01882 Eucalyptus grandis HOM05D004807 ORTHO05D005915 3.1e-38 162.9 156 57.7
Psat7g139360 Pisum sativum HOM05D004807 ORTHO05D005915 4.0e-38 162.5 200 49.0
CsaV3_7G005530 Cucumis sativus L. HOM05D004807 ORTHO05D005915 8.9e-38 161.4 136 61.0
EL10Ac4g10205 Beta vulgaris HOM05D000020 ORTHO05D027019 8.3e-36 154.8 124 62.1
AL3G23560 Arabidopsis lyrata HOM05D004807 ORTHO05D005915 3.2e-35 152.9 155 50.3
SHI30024 Sapria himalayana HOM05D004807 ORTHO05D005915 3.0e-33 146.4 159 52.8
CSS0045552 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 3.1e-30 136.3 103 67.0
CBR_g51523 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-29 133.7 168 42.3
SHI30022 Sapria himalayana HOM05D004807 ORTHO05D005915 2.4e-22 110.2 104 51.9
Psat3g169960 Pisum sativum HOM05D002132 ORTHO05D009901 1.1e-16 91.3 62 64.5
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.6e-15 87.4 108 45.4
Cfa020119 Carpinus fangiana HOM05D004807 ORTHO05D021976 2.1e-15 87.0 54 75.9
RcHm_v2.0_Chr3g0478521 Rosa chinensis HOM05D004807 ORTHO05D005915 5.2e-14 82.4 55 67.3
AUR62030183 Chenopodium quinoa HOM05D000826 ORTHO05D000250 9.0e-14 81.6 52 71.2
CsaV3_7G005520 Cucumis sativus L. HOM05D004807 ORTHO05D005915 8.4e-12 75.1 56 75.0
MCO03G129 Micromonas commoda HOM05D004807 ORTHO05D005915 2.1e-10 70.5 116 33.6
Migut.N02978 Erythranthe guttata HOM05D003635 ORTHO05D004283 2.1e-07 60.5 137 27.7
Nn2g12856 Nelumbo nucifera HOM05D003635 ORTHO05D004283 2.1e-07 60.5 137 29.2
PSO384G4083 Papaver somniferum HOM05D003635 ORTHO05D004283 2.1e-07 60.5 137 29.2
Prupe.2G226500 Prunus persica HOM05D003635 ORTHO05D004283 2.8e-07 60.1 141 27.0
Sabra08G0035000 Salix brachista HOM05D003635 ORTHO05D004283 2.8e-07 60.1 141 26.2
PSO339G2718 Papaver somniferum HOM05D003635 ORTHO05D004283 3.6e-07 59.7 137 29.2
ECA233G0861 Erigeron canadensis HOM05D003635 ORTHO05D004283 4.8e-07 59.3 124 32.3
FvH4_1g28630 Fragaria vesca HOM05D003635 ORTHO05D004283 4.8e-07 59.3 141 26.2
Potri.008G048900 Populus trichocarpa HOM05D003635 ORTHO05D004283 4.8e-07 59.3 141 26.2
THA.LOC104824257 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 4.8e-07 59.3 137 27.7
CAN.G1557.8 Capsicum annuum HOM05D003635 ORTHO05D004283 6.2e-07 58.9 137 26.3
Glyma.10G291300 Glycine max HOM05D003635 ORTHO05D004283 8.1e-07 58.5 141 26.2
Glyma.20G240500 Glycine max HOM05D003635 ORTHO05D004283 8.1e-07 58.5 141 26.2
Lj8A91T61 Lonicera japonica HOM05D003635 ORTHO05D004283 8.1e-07 58.5 141 27.0
MD01G1119800 Malus domestica HOM05D003635 ORTHO05D004283 8.1e-07 58.5 141 26.2
MD07G1189000 Malus domestica HOM05D003635 ORTHO05D004283 8.1e-07 58.5 141 26.2
Medtr1g115525 Medicago truncatula HOM05D003635 ORTHO05D004283 8.1e-07 58.5 141 26.2
SMO116G0157 Selaginella moellendorffii HOM05D003635 ORTHO05D004283 8.1e-07 58.5 141 27.0
SGA_v2.0_scaffold364G49990 Striga asiatica HOM05D003635 ORTHO05D004283 8.1e-07 58.5 137 28.5
SGA_v2.0_scaffold54G19634 Striga asiatica HOM05D003635 ORTHO05D004283 8.1e-07 58.5 137 28.5
THA.LOC104810010 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 8.1e-07 58.5 137 27.7
Cpa.g.sc1.324 Carica papaya HOM05D003635 ORTHO05D004283 1.1e-06 58.2 137 27.0
Lsat_1_v5_gn_8_18261 Lactuca sativa HOM05D003635 ORTHO05D004283 1.1e-06 58.2 124 30.6
Manes.07G109100 Manihot esculenta HOM05D003635 ORTHO05D004283 1.1e-06 58.2 141 26.2
BcaB02g07694 Brassica carinata HOM05D003635 ORTHO05D004283 1.4e-06 57.8 137 29.2
Lalb_Chr02g0143971 Lupinus albus HOM05D003635 ORTHO05D004283 1.4e-06 57.8 137 25.5
MSTRG.22089 Avicennia marina HOM05D003635 ORTHO05D004283 1.8e-06 57.4 137 27.0
Ca_11305_v3 Cicer arietinum L. HOM05D003635 ORTHO05D004283 1.8e-06 57.4 141 27.0
HanXRQChr14g0437201 Helianthus annuus HOM05D003635 ORTHO05D004283 1.8e-06 57.4 124 30.6
Lalb_Chr06g0164191 Lupinus albus HOM05D003635 ORTHO05D004283 1.8e-06 57.4 137 26.3
Phvul.007G009600 Phaseolus vulgaris HOM05D003635 ORTHO05D004283 1.8e-06 57.4 141 26.2
Psat6g237600 Pisum sativum HOM05D003635 ORTHO05D004283 1.8e-06 57.4 141 26.2
Potri.010G212100 Populus trichocarpa HOM05D003635 ORTHO05D004283 1.8e-06 57.4 141 25.5
TPR.G35191 Trifolium pratense HOM05D003635 ORTHO05D004283 1.8e-06 57.4 133 27.1
TWI63G0503 Tripterygium wilfordii HOM05D003635 ORTHO05D004283 1.8e-06 57.4 141 26.2
TAR369G0684 Trochodendron aralioides HOM05D003635 ORTHO05D004283 1.8e-06 57.4 137 29.2
arahy.Tifrunner.gnm1.ann1.4JT818 Arachis hypogaea HOM05D003635 ORTHO05D004283 2.4e-06 57.0 141 25.5
arahy.Tifrunner.gnm1.ann1.T81D7J Arachis hypogaea HOM05D003635 ORTHO05D004283 2.4e-06 57.0 141 25.5
CSS0019699 Camellia sinensis var. sinensis HOM05D003635 ORTHO05D004283 2.4e-06 57.0 137 27.0
Cre08.g372800 Chlamydomonas reinhardtii HOM05D003635 ORTHO05D004283 2.4e-06 57.0 153 26.1
PRCOL_00000086 Prasinoderma coloniale HOM05D003635 ORTHO05D004283 2.4e-06 57.0 133 30.8
Manes.10G036500 Manihot esculenta HOM05D003635 ORTHO05D004283 3.1e-06 56.6 141 24.8
SalBow7G2745 Salvia bowleyana HOM05D003635 ORTHO05D004283 3.1e-06 56.6 149 27.5
SEGI_09849 Sequoiadendron giganteum HOM05D004807 ORTHO05D005915 3.1e-06 56.6 45 60.0
CARHR289060 Cardamine hirsuta HOM05D003635 ORTHO05D004283 4.0e-06 56.2 137 27.7
Thhalv10006588m.g Eutrema salsugineum HOM05D003635 ORTHO05D004283 4.0e-06 56.2 137 27.7
Sp5g07240 Schrenkiella parvula HOM05D003635 ORTHO05D004283 4.0e-06 56.2 137 27.7
BcaC09g48162 Brassica carinata HOM05D003635 ORTHO05D004283 6.9e-06 55.5 133 29.3
BolC1t05325H Brassica oleracea HOM05D003635 ORTHO05D004283 6.9e-06 55.5 133 29.3
BraA01t04192Z Brassica rapa HOM05D003635 ORTHO05D004283 6.9e-06 55.5 133 29.3
Carub.0005s2188 Capsella rubella HOM05D003635 ORTHO05D004283 6.9e-06 55.5 137 27.7
Aa31LG10G9870 Aethionema arabicum HOM05D003635 ORTHO05D004283 9.0e-06 55.1 137 27.0
DCAR_015231 Daucus carota HOM05D003635 ORTHO05D004283 9.0e-06 55.1 137 26.3
DCAR_019162 Daucus carota HOM05D003635 ORTHO05D004283 9.0e-06 55.1 137 26.3
HPP92_016709 Vanilla planifolia HOM05D003635 ORTHO05D004283 9.0e-06 55.1 137 27.7


User provided reference genes

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