Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 6.7e-42 173.7 95 100.0
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 6.3e-32 140.6 96 81.2
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 4.5e-30 134.4 95 75.8
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 4.5e-30 134.4 93 77.4
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 4.5e-30 134.4 93 77.4
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 4.5e-30 134.4 95 76.8
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 7.7e-30 133.7 95 74.7
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.0e-29 133.3 95 73.7
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.3e-29 132.9 90 76.7
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 2.9e-29 131.7 95 74.7
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 6.5e-29 130.6 93 74.2
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 8.5e-29 130.2 87 78.2
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.5e-28 129.4 95 71.6
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.5e-28 128.6 89 76.4
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 3.2e-28 128.3 87 75.9
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.2e-28 128.3 87 75.9
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 3.2e-28 128.3 95 72.6
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 4.2e-28 127.9 87 74.7
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 4.2e-28 127.9 95 70.5
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 4.2e-28 127.9 95 70.5
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 5.5e-28 127.5 87 78.2
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 5.5e-28 127.5 87 78.2
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 5.5e-28 127.5 95 71.6
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 5.5e-28 127.5 87 75.9
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 7.2e-28 127.1 87 77.0
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 9.4e-28 126.7 95 70.5
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 3.6e-27 124.8 87 72.4
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 3.6e-27 124.8 87 73.6
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 6.1e-27 124.0 95 71.6
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 6.1e-27 124.0 92 69.6
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.0e-26 121.7 95 67.4
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 8.8e-26 120.2 95 67.4
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 1.5e-25 119.4 87 70.1
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.0e-25 119.0 88 71.6
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 2.6e-25 118.6 96 68.8
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 4.4e-25 117.9 93 68.8
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 5.7e-25 117.5 91 69.2
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 7.5e-25 117.1 83 73.5
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 4.8e-24 114.4 87 67.8
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.4e-23 112.1 102 62.7
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 5.3e-23 110.9 96 67.7
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.9e-21 105.1 78 71.8
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 5.0e-21 104.4 79 69.6
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.5e-20 102.8 79 68.4
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.9e-20 102.4 79 68.4
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 2.5e-20 102.1 79 67.1
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.5e-20 102.1 79 67.1
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.2e-20 101.7 78 67.9
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 4.2e-20 101.3 79 65.8
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 4.2e-20 101.3 79 65.8
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 4.2e-20 101.3 79 65.8
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 9.4e-20 100.1 79 65.8
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.6e-19 99.4 77 71.4
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 1.6e-19 99.4 67 79.1
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 3.6e-19 98.2 79 64.6
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 4.7e-19 97.8 74 74.3
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.0e-18 96.7 95 58.9
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.5e-17 92.8 88 56.8
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.1e-15 86.7 99 50.5
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.1e-15 86.7 99 48.5
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 3.1e-15 85.1 99 49.5
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 4.1e-15 84.7 99 48.5
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 4.1e-15 84.7 78 56.4
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 4.1e-15 84.7 78 56.4
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 5.4e-15 84.3 87 51.7
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 5.4e-15 84.3 76 60.5
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 7.0e-15 84.0 79 57.0
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 7.0e-15 84.0 79 58.2
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 7.0e-15 84.0 99 48.5
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 7.0e-15 84.0 99 49.5
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 7.0e-15 84.0 99 49.5
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 7.0e-15 84.0 99 47.5
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 7.0e-15 84.0 99 50.5
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 7.0e-15 84.0 99 50.5
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 9.1e-15 83.6 100 47.0
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 9.1e-15 83.6 83 53.0
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.2e-14 83.2 97 49.5
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 1.2e-14 83.2 99 48.5
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.6e-14 82.8 99 47.5
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.6e-14 82.8 78 57.7
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 2.0e-14 82.4 99 47.5
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.0e-14 82.4 99 47.5
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.0e-14 82.4 76 57.9
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 2.0e-14 82.4 78 55.1
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.0e-14 82.4 99 48.5
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 2.7e-14 82.0 78 56.4
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 3.5e-14 81.6 79 53.2
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 3.5e-14 81.6 78 56.4
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 3.5e-14 81.6 79 55.7
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.5e-14 81.6 79 55.7
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 3.5e-14 81.6 79 57.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.5e-14 81.6 99 47.5
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 3.5e-14 81.6 78 56.4
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 3.5e-14 81.6 99 49.5
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 4.5e-14 81.3 79 55.7
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 4.5e-14 81.3 79 55.7
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 5.9e-14 80.9 78 55.1
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 5.9e-14 80.9 76 56.6
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 5.9e-14 80.9 76 56.6
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 7.7e-14 80.5 79 55.7
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 7.7e-14 80.5 79 55.7
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 7.7e-14 80.5 79 55.7
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 7.7e-14 80.5 79 55.7
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 7.7e-14 80.5 99 47.5
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 7.7e-14 80.5 105 46.7
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 7.7e-14 80.5 76 53.9
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 7.7e-14 80.5 79 51.9
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 7.7e-14 80.5 79 51.9
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 7.7e-14 80.5 99 46.5
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.0e-13 80.1 99 47.5
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.0e-13 80.1 99 46.5
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.3e-13 79.7 78 53.8
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.3e-13 79.7 79 54.4
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.3e-13 79.7 79 54.4
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 1.3e-13 79.7 79 54.4
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 1.3e-13 79.7 79 54.4
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 1.3e-13 79.7 79 54.4
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.3e-13 79.7 79 54.4
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.3e-13 79.7 79 54.4
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.7e-13 79.3 76 55.3
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.3e-13 79.0 99 45.5
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.3e-13 79.0 76 55.3
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 2.9e-13 78.6 76 52.6
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 2.9e-13 78.6 99 44.4
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 2.9e-13 78.6 78 51.3
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 3.8e-13 78.2 74 58.1
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 3.8e-13 78.2 76 52.6
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.8e-13 78.2 76 55.3
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 3.8e-13 78.2 78 56.4
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 6.5e-13 77.4 99 45.5
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 6.5e-13 77.4 79 53.2
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 8.6e-13 77.0 76 52.6
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 2.5e-12 75.5 74 55.4
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 5.5e-12 74.3 74 54.1
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 9.5e-12 73.6 74 54.1
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 9.5e-12 73.6 93 45.2
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 9.5e-12 73.6 76 50.0
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.2e-11 73.2 71 56.3
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.1e-11 72.4 98 44.9
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 2.8e-11 72.0 99 43.4
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 4.7e-11 71.2 48 81.2
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 6.1e-11 70.9 73 49.3
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.4e-10 69.7 104 43.3
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 5.7e-09 64.3 62 61.3
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 2.8e-08 62.0 61 60.7
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 3.1e-07 58.5 72 47.2
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 3.1e-07 58.5 118 36.4
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.7e-06 55.5 53 54.7


User provided reference genes

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