Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.9e-171 606.3 434 100.0
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.0e-105 387.9 386 82.4
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 3.1e-102 376.3 386 81.6
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.3e-102 375.6 386 81.6
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.3e-102 375.6 386 81.3
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 6.9e-102 375.2 357 86.6
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 9.1e-102 374.8 401 79.3
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 9.1e-102 374.8 396 81.1
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 8.5e-100 368.2 385 82.1
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.4e-99 367.5 388 79.4
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 3.2e-99 366.3 389 81.2
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.8e-97 360.5 388 78.4
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.8e-97 360.5 390 80.8
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 3.0e-97 359.8 385 80.3
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.0e-97 359.8 385 80.0
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 8.8e-97 358.2 389 77.6
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.0e-96 357.1 390 80.5
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.0e-96 357.1 390 80.5
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 2.6e-96 356.7 388 79.9
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.7e-95 354.0 386 76.7
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 1.1e-94 351.3 358 85.5
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.0e-93 347.1 418 70.3
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 4.5e-93 345.9 402 75.4
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 1.0e-92 344.7 376 81.6
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.3e-92 344.4 387 79.8
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.3e-92 344.4 360 84.7
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 2.9e-92 343.2 398 78.4
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.1e-91 341.3 360 83.3
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.9e-91 340.5 392 79.1
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.9e-91 340.5 387 78.6
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 4.2e-91 339.3 386 68.1
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 5.5e-91 339.0 360 83.9
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 1.6e-90 337.4 398 77.1
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 2.1e-90 337.0 388 79.1
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 2.7e-90 336.7 386 79.0
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.7e-90 336.7 369 80.5
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 8.0e-90 335.1 217 80.6
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 8.0e-90 335.1 394 75.9
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 1.8e-89 334.0 366 82.5
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 2.3e-89 333.6 436 73.9
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 3.9e-89 332.8 408 75.0
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 8.8e-89 331.6 218 77.5
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.1e-88 331.3 391 79.3
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 1.5e-88 330.9 404 61.1
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.0e-88 330.5 389 76.3
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 2.6e-88 330.1 389 77.1
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 4.4e-88 329.3 218 78.4
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 9.7e-88 328.2 218 76.1
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 2.2e-87 327.0 388 77.8
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 2.2e-87 327.0 386 75.6
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 3.7e-87 326.2 391 69.1
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 3.7e-87 326.2 389 72.5
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 3.7e-87 326.2 389 72.5
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 8.2e-87 325.1 404 75.7
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.4e-86 324.3 218 74.3
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.8e-86 323.9 218 75.7
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 2.4e-86 323.6 386 75.9
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 2.4e-86 323.6 389 75.1
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 2.4e-86 323.6 388 74.0
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 3.1e-86 323.2 389 74.3
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 5.3e-86 322.4 493 60.4
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 5.3e-86 322.4 392 71.2
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 9.1e-86 321.6 386 76.2
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 9.1e-86 321.6 406 71.9
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 9.1e-86 321.6 189 86.8
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 1.0e-84 318.2 387 78.8
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.7e-84 317.4 389 74.8
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 2.2e-84 317.0 218 74.8
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.2e-84 317.0 207 77.3
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 1.1e-83 314.7 386 75.6
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 1.1e-83 314.7 360 76.4
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 2.5e-83 313.5 386 76.9
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 6.1e-82 308.9 438 70.5
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.0e-81 308.1 218 72.9
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 3.4e-80 303.1 386 75.9
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.7e-79 300.8 189 79.9
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.2e-79 300.4 358 80.2
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 6.3e-79 298.9 218 72.0
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 8.3e-79 298.5 184 76.6
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.1e-78 298.1 217 71.4
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.1e-78 298.1 217 71.4
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.1e-78 298.1 217 71.4
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.1e-78 298.1 358 76.0
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 1.4e-78 297.7 215 72.1
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.4e-78 297.7 184 76.6
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 2.4e-78 297.0 184 76.6
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 5.4e-78 295.8 184 76.1
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 9.1e-78 295.0 184 76.1
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 9.1e-78 295.0 184 77.2
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 9.1e-78 295.0 184 78.3
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.2e-77 294.7 184 75.5
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 2.0e-77 293.9 155 89.0
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 5.9e-77 292.4 169 84.0
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 7.7e-77 292.0 183 82.0
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 7.7e-77 292.0 183 82.0
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.2e-76 290.4 395 74.9
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 8.5e-76 288.5 155 86.5
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 2.5e-75 287.0 162 85.2
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 4.2e-75 286.2 497 56.9
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 9.4e-75 285.0 396 48.5
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 6.1e-74 282.3 155 85.2
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 6.1e-74 282.3 155 83.9
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-73 281.6 207 67.1
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.8e-73 280.8 181 77.3
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 3.0e-73 280.0 190 74.7
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 8.8e-73 278.5 155 84.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 1.5e-72 277.7 183 74.9
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.7e-71 274.2 155 81.9
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 2.4e-70 270.4 539 52.5
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.4e-70 270.4 360 48.3
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 4.1e-70 269.6 189 72.5
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 9.1e-70 268.5 386 49.0
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 1.1e-67 261.5 184 69.6
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 4.2e-67 259.6 364 73.9
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 9.5e-67 258.5 155 78.1
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 3.0e-65 253.4 161 76.4
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.4e-62 244.6 388 44.8
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.8e-57 227.6 339 69.6
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 6.4e-55 219.2 155 60.0
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 6.6e-52 209.1 297 70.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 3.1e-49 200.3 128 78.9
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 1.8e-41 174.5 150 53.3
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 2.3e-41 174.1 149 54.4
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 8.4e-39 165.6 157 54.1
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 7.6e-32 142.5 87 85.1
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 9.6e-27 125.6 62 93.5
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 1.6e-26 124.8 91 67.0
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.6e-24 117.5 90 63.3
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.7e-23 114.8 70 75.7
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.7e-23 114.8 70 75.7
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 5.3e-17 93.2 60 73.3
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 2.7e-13 80.9 69 59.4
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 3.0e-12 77.4 55 74.5
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 4.3e-11 73.6 42 81.0
ATR0693G087 Amborella trichopoda HOM05D005421 ORTHO05D026565 8.1e-10 69.3 57 75.4
CSS0031576 Camellia sinensis var. sinensis HOM05D032561 ORTHO05D030857 6.5e-07 59.7 44 77.3
CSS0038730 Camellia sinensis var. sinensis HOM05D032561 ORTHO05D030857 6.5e-07 59.7 44 77.3
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 8.4e-07 59.3 27 100.0
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 4.2e-06 57.0 28 92.9
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 4.2e-06 57.0 118 35.6
BcaB06g29159 Brassica carinata HOM05D005421 ORTHO05D031077 5.5e-06 56.6 42 71.4


User provided reference genes

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