Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 2644.0 1350 100.0
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 2076.6 1360 80.7
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1875.1 1383 71.7
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1809.3 1390 69.1
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1770.0 1387 67.5
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1768.8 1385 68.5
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1732.6 1500 65.1
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1728.8 1387 66.3
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1723.4 1351 68.2
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1715.7 1383 66.5
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1707.2 1423 64.9
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1704.5 1382 66.4
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1676.8 1384 65.9
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1662.5 1381 65.2
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1657.5 1380 64.8
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1653.6 1382 65.1
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1635.2 1382 63.7
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1635.2 1516 59.9
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1628.6 1351 64.9
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1610.9 1476 61.1
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1562.4 1383 62.3
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1561.2 1374 60.4
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1536.2 1395 59.8
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1531.2 1352 60.7
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1527.3 1433 60.1
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1524.2 1381 60.6
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1511.5 1461 57.2
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1511.5 1351 60.3
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1511.1 1384 59.8
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1480.7 1371 58.8
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1480.7 1363 59.3
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1479.5 1366 58.2
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1478.4 1386 57.9
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1474.1 1372 58.3
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1473.8 1402 58.2
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1470.3 1385 58.5
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1466.4 1370 58.0
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1461.8 1372 58.1
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1457.6 1381 58.7
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1457.2 1380 57.8
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1451.0 1409 57.8
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1447.6 1429 56.8
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1441.4 1411 56.8
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1436.4 1385 57.2
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1429.1 1371 55.9
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1425.2 1373 56.1
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1423.7 1389 56.8
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1421.8 1351 57.9
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1413.7 1395 55.1
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1410.2 1375 56.6
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1404.4 1374 56.4
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1403.7 1383 55.7
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1403.3 1443 55.3
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1397.1 1359 57.6
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1394.8 1398 56.2
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1387.5 1419 54.4
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1387.1 1383 55.7
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1382.9 1416 57.4
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1372.8 1372 55.6
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1369.8 1419 54.0
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1364.4 1431 53.8
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1354.7 1332 57.2
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1350.9 1373 56.7
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1350.1 1377 55.0
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1349.3 1348 55.6
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1349.0 1447 52.9
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1348.2 1382 57.2
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1340.5 1372 54.3
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1338.9 1376 54.9
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1320.1 1380 54.1
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1313.5 1350 54.5
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1312.4 1358 54.9
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1305.0 1254 57.6
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1303.9 1388 52.5
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1293.1 1364 54.5
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1288.1 1358 53.4
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1277.3 1347 53.2
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1274.6 1372 52.7
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1274.2 1365 53.5
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1271.5 1373 52.4
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1271.5 1373 52.4
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1271.5 1373 52.4
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1268.4 1371 52.2
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1268.4 1366 53.0
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1267.7 1068 65.0
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1265.4 1349 53.2
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1264.6 1371 52.1
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1251.1 1373 51.8
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 0.0e+00 1234.2 1353 52.0
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1232.2 1375 51.3
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 0.0e+00 1164.8 1360 48.6
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 0.0e+00 1163.3 936 68.1
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 0.0e+00 1105.9 1383 47.4
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 0.0e+00 1100.5 1089 55.4
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 9.2e-312 1073.9 937 63.4
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 7.0e-310 1067.8 1309 48.6
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.2e-262 909.1 728 67.6
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 6.0e-261 905.2 868 58.3
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.2e-248 864.4 725 65.2
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.3e-247 860.9 850 57.6
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 2.3e-236 823.5 778 59.4
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 9.6e-235 818.1 944 51.7
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 4.6e-229 799.3 641 67.6
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 2.4e-217 760.4 710 59.4
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 6.5e-199 699.1 599 59.4
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 8.3e-194 682.2 839 50.1
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 7.0e-193 679.1 480 72.1
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 8.6e-175 619.0 1458 32.7
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 2.8e-165 587.4 507 60.0
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 9.8e-163 578.9 1381 33.4
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 8.3e-162 575.9 358 80.7
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 7.8e-160 569.3 641 49.0
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 2.6e-147 527.7 1363 30.2
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 4.2e-145 520.4 358 72.1
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.2e-144 518.8 1046 35.9
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 4.8e-141 506.9 1322 29.9
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 6.2e-141 506.5 1148 33.0
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 7.9e-120 436.4 417 51.6
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.0e-107 395.2 678 36.3
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.4e-105 389.0 445 47.2
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 4.1e-92 344.4 238 69.7
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 4.1e-92 344.4 321 57.9
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.0e-87 328.2 326 49.7
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.5e-83 314.3 234 70.9
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 1.2e-78 299.7 380 49.5
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 4.4e-78 297.7 351 49.3
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.0e-75 288.9 325 51.1
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 5.2e-63 247.7 272 50.7
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.3e-53 216.5 296 43.9
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 3.2e-52 211.8 201 63.7
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 8.9e-47 193.7 173 60.7
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 9.8e-46 190.3 120 76.7
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 3.6e-40 171.8 301 39.5
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 3.9e-34 151.8 510 26.1
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 8.9e-31 140.6 217 41.9
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.2e-29 136.0 166 48.2
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 2.1e-27 129.4 380 27.9
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 8.7e-26 124.0 85 70.6
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.6e-24 119.8 401 23.2
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.1e-24 119.4 430 28.4
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 4.0e-23 115.2 479 26.9
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 9.3e-20 104.0 104 56.7
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.3e-18 100.1 86 60.5
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.6e-16 93.2 149 45.6
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.8e-16 92.4 70 67.1
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.5e-14 86.7 285 24.9
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.6e-08 66.6 45 68.9
Sabra05G0049200 Salix brachista HOM05D005030 ORTHO05D006490 8.2e-08 64.3 110 39.1
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 1.2e-06 60.5 39 74.4


User provided reference genes

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