Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 1.0e-121 440.3 257 100.0
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 7.3e-91 337.8 262 80.2
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 8.0e-90 334.3 260 68.1
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 5.2e-89 331.6 263 71.1
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 1.6e-85 320.1 260 76.2
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 2.0e-85 319.7 264 70.1
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 4.7e-82 308.5 248 69.0
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 2.3e-81 306.2 266 66.9
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.0e-81 305.4 260 69.2
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 2.0e-80 303.1 253 66.8
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 5.8e-80 301.6 257 65.0
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 5.8e-80 301.6 248 69.0
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 9.8e-80 300.8 253 66.8
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.2e-79 299.7 259 68.3
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.9e-79 299.3 250 69.6
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 6.4e-79 298.1 259 68.3
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 8.3e-79 297.7 255 69.4
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 8.3e-79 297.7 258 67.8
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 8.3e-79 297.7 253 70.8
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 1.9e-78 296.6 263 68.4
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 2.4e-78 296.2 247 70.4
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 4.1e-78 295.4 247 70.4
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 9.2e-78 294.3 267 70.4
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 1.6e-77 293.5 250 68.4
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 3.5e-77 292.4 258 66.3
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 4.6e-77 292.0 257 66.5
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 1.0e-76 290.8 253 68.4
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 1.0e-76 290.8 253 70.8
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 1.7e-76 290.0 250 72.4
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 2.3e-76 289.7 248 65.3
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 3.9e-76 288.9 249 67.5
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 5.1e-76 288.5 252 67.1
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 5.1e-76 288.5 251 72.1
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 8.6e-76 287.7 267 65.5
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 3.3e-75 285.8 247 70.9
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 3.3e-75 285.8 251 64.5
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 1.6e-74 283.5 252 67.5
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 1.6e-74 283.5 247 63.2
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 1.6e-74 283.5 246 69.1
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 3.6e-74 282.3 244 67.6
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 4.7e-74 282.0 255 60.4
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 1.8e-73 280.0 252 67.1
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 5.2e-73 278.5 255 62.0
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 6.8e-73 278.1 255 60.8
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 8.9e-73 277.7 255 60.0
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 1.5e-72 276.9 259 59.1
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 2.6e-72 276.2 247 64.4
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 5.8e-72 275.0 263 54.0
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.3e-71 273.9 242 61.6
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.8e-71 272.3 249 65.1
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 1.1e-70 270.8 277 59.2
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 1.4e-70 270.4 246 65.9
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 1.9e-70 270.0 260 62.7
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 1.6e-69 266.9 272 61.0
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 1.6e-69 266.9 249 64.7
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 4.6e-69 265.4 269 60.6
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 4.6e-69 265.4 249 64.3
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 1.3e-68 263.8 247 61.5
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 1.7e-68 263.5 261 54.0
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 3.0e-68 262.7 268 60.8
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 3.9e-68 262.3 269 60.2
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 5.1e-68 261.9 259 61.4
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 1.5e-67 260.4 252 58.7
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 4.3e-67 258.8 273 59.3
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 7.3e-67 258.1 274 61.7
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 7.3e-67 258.1 276 59.4
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 9.6e-67 257.7 246 59.8
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 9.6e-67 257.7 254 66.1
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 1.6e-66 256.9 276 59.1
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 2.8e-66 256.1 273 58.6
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 2.8e-66 256.1 249 63.5
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 4.7e-66 255.4 258 64.7
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 4.7e-66 255.4 260 59.6
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 1.1e-65 254.2 249 62.7
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 1.4e-65 253.8 256 62.1
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 5.2e-65 251.9 247 63.2
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 7.6e-64 248.1 248 61.7
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 2.2e-63 246.5 221 69.7
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 3.8e-63 245.7 256 55.5
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 1.4e-62 243.8 249 65.5
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 3.2e-62 242.7 249 66.3
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 5.4e-62 241.9 232 64.7
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 7.1e-62 241.5 271 56.1
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 7.1e-62 241.5 221 62.4
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 9.3e-62 241.1 249 57.8
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 1.6e-61 240.4 246 66.3
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 8.7e-60 234.6 221 65.6
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 1.3e-58 230.7 211 66.8
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 1.5e-56 223.8 240 57.5
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 2.0e-56 223.4 248 58.1
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 4.5e-56 222.2 181 65.7
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 1.9e-54 216.9 205 62.0
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 1.2e-53 214.2 194 60.3
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 2.1e-53 213.4 244 58.2
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 4.6e-53 212.2 248 49.6
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.3e-52 209.9 258 49.2
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 3.3e-51 206.1 185 60.0
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 9.6e-51 204.5 152 71.7
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 1.4e-49 200.7 253 46.6
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.3e-44 184.1 150 62.0
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 1.3e-44 184.1 250 50.4
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 6.7e-44 181.8 250 41.6
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 1.8e-41 173.7 160 59.4
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 5.3e-41 172.2 160 63.1
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 5.1e-36 155.6 261 37.9
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 3.7e-34 149.4 273 42.1
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 7.6e-32 141.7 250 40.0
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 5.0e-31 139.0 118 71.2
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 5.0e-31 139.0 118 71.2
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 2.1e-29 133.7 133 63.9
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 9.1e-25 118.2 206 44.2
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 1.0e-23 114.8 158 43.0
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 2.1e-21 107.1 257 36.2
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 1.8e-20 104.0 123 48.0
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.9e-14 84.0 88 58.0
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 5.5e-14 82.4 333 26.7
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 2.6e-11 73.6 45 68.9
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 2.4e-09 67.0 129 37.2
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 5.3e-09 65.9 57 56.1
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 4.5e-08 62.8 109 36.7
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 5.0e-07 59.3 58 44.8
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 6.5e-07 58.9 57 45.6
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.1e-06 58.2 69 40.6
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 1.5e-06 57.8 63 44.4
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.9e-06 57.4 69 40.6
Hund21526 Selenicereus undatus HOM05D005384 ORTHO05D006477 3.2e-06 56.6 59 42.4
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 4.2e-06 56.2 58 44.8
unitig_21.g20863 Utricularia gibba HOM05D005384 ORTHO05D006477 4.2e-06 56.2 70 38.6
Ah.14g086470 Amaranthus hybridus HOM05D005384 ORTHO05D006477 5.5e-06 55.8 57 43.9
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 5.5e-06 55.8 58 39.7
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 5.5e-06 55.8 52 46.2
Lj3C397G6 Lonicera japonica HOM05D005384 ORTHO05D006477 7.2e-06 55.5 67 43.3
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 9.4e-06 55.1 70 38.6
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 9.4e-06 55.1 59 39.0
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 9.4e-06 55.1 59 39.0
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 9.4e-06 55.1 57 40.4
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 9.4e-06 55.1 58 43.1
Thecc.04G058100 Theobroma cacao HOM05D005384 ORTHO05D006477 9.4e-06 55.1 54 44.4


User provided reference genes

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