Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24080 Davidia involucrata HOM05D006596 ORTHO05D008497 5.7e-133 477.6 248 100.0
CSS0017956 Camellia sinensis var. sinensis HOM05D006596 ORTHO05D008497 6.7e-41 171.8 308 36.7
CAN.G911.26 Capsicum annuum HOM05D006596 ORTHO05D008497 1.1e-38 164.5 319 36.4
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 9.6e-32 141.4 321 34.0
Rhsim03G0063400 Rhododendron simsii HOM05D001372 ORTHO05D002010 1.3e-31 141.0 157 49.0
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 4.8e-31 139.0 190 45.3
CANSAT64G0970 Cannabis sativa HOM05D006596 ORTHO05D008497 4.5e-29 132.5 320 30.9
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 1.3e-28 131.0 188 43.6
Lj1g0010915 Lotus japonicus HOM05D006596 ORTHO05D008497 2.9e-28 129.8 317 29.7
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 8.4e-28 128.3 318 31.8
Sabra06G0154500 Salix brachista HOM05D006596 ORTHO05D008497 1.4e-27 127.5 317 30.9
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 7.1e-27 125.2 321 30.5
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 1.2e-26 124.4 316 30.1
Lj1P1058T24 Lonicera japonica HOM05D006596 ORTHO05D008497 1.2e-26 124.4 179 42.5
EL10Ac4g10108 Beta vulgaris HOM05D006596 ORTHO05D008497 2.1e-26 123.6 318 29.9
Dinv11886 Davidia involucrata HOM05D006596 ORTHO05D008497 2.1e-26 123.6 149 47.0
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 2.7e-26 123.2 323 30.3
Psat6g128160 Pisum sativum HOM05D006596 ORTHO05D008497 4.6e-26 122.5 279 31.2
Aqoxy1G00603 Aquilegia oxysepala HOM05D006596 ORTHO05D008497 6.7e-25 118.6 318 28.9
Hma1.2p1_0969F.1_g242594 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 1.9e-24 117.1 155 42.6
PSO384G2212 Papaver somniferum HOM05D006596 ORTHO05D008497 4.3e-24 115.9 320 27.5
Sed0007804 Sechium edule HOM05D006596 ORTHO05D008497 2.2e-23 113.6 316 28.8
PSO339G5577 Papaver somniferum HOM05D006596 ORTHO05D008497 3.7e-23 112.8 316 27.2
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 6.3e-23 112.1 315 29.5
HanXRQChr14g0453291 Helianthus annuus HOM05D006596 ORTHO05D008497 8.2e-23 111.7 179 38.0
Lj5g0008032 Lotus japonicus HOM05D006596 ORTHO05D008497 8.2e-23 111.7 211 36.0
Cc06_g06860 Coffea canephora HOM05D006596 ORTHO05D008497 1.1e-22 111.3 136 47.8
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 1.1e-22 111.3 319 30.1
Thecc.05G108600 Theobroma cacao HOM05D006596 ORTHO05D008497 1.1e-22 111.3 315 27.9
MD12G1044100 Malus domestica HOM05D006596 ORTHO05D008497 1.8e-22 110.5 102 52.0
Duzib093G1929 Durio zibethinus HOM05D006596 ORTHO05D008497 2.4e-22 110.2 319 29.8
TAR636G1255 Trochodendron aralioides HOM05D006596 ORTHO05D008497 3.1e-22 109.8 320 27.5
RcHm_v2.0_Chr3g0476881 Rosa chinensis HOM05D006596 ORTHO05D008497 4.1e-22 109.4 102 55.9
Gohir.A11G315300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 1.2e-21 107.8 104 52.9
Eucgr.A02555 Eucalyptus grandis HOM05D006596 ORTHO05D008497 2.6e-21 106.7 319 28.2
FvH4_6g20810 Fragaria vesca HOM05D006596 ORTHO05D008497 3.4e-21 106.3 138 44.2
FAN14G5569 Fragaria x ananassa HOM05D006596 ORTHO05D008497 3.4e-21 106.3 138 44.2
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 5.9e-21 105.5 135 44.4
Gorai.007G363200 Gossypium raimondii HOM05D006596 ORTHO05D008497 5.9e-21 105.5 135 44.4
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 7.7e-21 105.1 154 42.9
Glyma.02G192800 Glycine max HOM05D006596 ORTHO05D008497 2.2e-20 103.6 320 26.9
Manes.09G043000 Manihot esculenta HOM05D006596 ORTHO05D008497 2.2e-20 103.6 136 44.1
Nn4g26016 Nelumbo nucifera HOM05D006596 ORTHO05D008497 2.2e-20 103.6 119 47.1
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 2.9e-20 103.2 136 41.9
TPR.G40248 Trifolium pratense HOM05D006596 ORTHO05D008497 2.9e-20 103.2 163 39.3
Oeu063088.1 Olea europaea HOM05D006596 ORTHO05D008497 3.8e-20 102.8 100 50.0
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 1.1e-19 101.3 175 38.3
COL.COLO4_29516 Corchorus olitorius HOM05D006596 ORTHO05D008497 1.4e-19 100.9 115 47.0
Sopen01g002840 Solanum pennellii HOM05D006596 ORTHO05D008497 1.4e-19 100.9 153 39.9
PGSC0003DMG400021371 Solanum tuberosum HOM05D006596 ORTHO05D008497 3.2e-19 99.8 153 39.2
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 5.5e-19 99.0 142 41.5
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 9.4e-19 98.2 153 39.2
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 2.7e-18 96.7 154 37.0
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 2.7e-18 96.7 136 41.2
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 2.7e-18 96.7 137 40.9
Cpa.g.sc104.1 Carica papaya HOM05D006596 ORTHO05D008497 4.6e-18 95.9 103 49.5
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 6.1e-18 95.5 132 42.4
VMungo0720G1474 Vigna mungo HOM05D006596 ORTHO05D008497 1.8e-17 94.0 136 40.4
DCAR_016913 Daucus carota HOM05D006596 ORTHO05D008497 2.3e-17 93.6 136 38.2
Phvul.007G266200 Phaseolus vulgaris HOM05D006596 ORTHO05D008497 2.3e-17 93.6 136 40.4
Ah.06g194670 Amaranthus hybridus HOM05D006596 ORTHO05D008497 3.9e-17 92.8 133 39.8
HPP92_016090 Vanilla planifolia HOM05D006596 ORTHO05D008497 6.7e-17 92.0 147 38.8
PGR004G2850 Punica granatum HOM05D006596 ORTHO05D008497 8.8e-17 91.7 135 41.5
Nitab4.5_0009788g0010 Nicotiana tabacum HOM05D006596 ORTHO05D008497 1.5e-16 90.9 137 38.0
SEGI_06407 Sequoiadendron giganteum HOM05D006596 ORTHO05D008497 4.3e-16 89.4 92 44.6
Peaxi162Scf00675g00062 Petunia axillaris HOM05D006596 ORTHO05D008497 5.7e-16 89.0 139 38.1
CDE07G1133 Ceratophyllum demersum HOM05D006596 ORTHO05D008497 1.3e-15 87.8 118 41.5
MSTRG.989 Avicennia marina HOM05D006596 ORTHO05D008497 1.4e-14 84.3 137 37.2
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 1.4e-14 84.3 130 39.2
Medtr1g055295 Medicago truncatula HOM05D006596 ORTHO05D008497 1.4e-14 84.3 314 25.5
Rhsim03G0062300 Rhododendron simsii HOM05D006596 ORTHO05D008497 2.4e-14 83.6 60 66.7
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 4.1e-14 82.8 130 37.7
Aa31sc52G230 Aethionema arabicum HOM05D006596 ORTHO05D008497 6.9e-14 82.0 155 32.9
CARHR207160 Cardamine hirsuta HOM05D006596 ORTHO05D008497 6.9e-14 82.0 129 37.2
AL6G16490 Arabidopsis lyrata HOM05D006596 ORTHO05D008497 1.2e-13 81.3 155 32.3
THA.LOC104816628 Tarenaya hassleriana HOM05D006596 ORTHO05D008497 1.5e-13 80.9 102 41.2
BolC9t59785H Brassica oleracea HOM05D006596 ORTHO05D008497 4.5e-13 79.3 129 38.8
Os12g0456100 Oryza sativa ssp. japonica HOM05D006596 ORTHO05D008497 4.5e-13 79.3 285 24.2
AT5G06400 Arabidopsis thaliana HOM05D006596 ORTHO05D008497 5.9e-13 79.0 130 36.9
Carub.0006s0529 Capsella rubella HOM05D006596 ORTHO05D008497 1.0e-12 78.2 135 37.0
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 2.2e-12 77.0 155 32.9
PSO339G1222 Papaver somniferum HOM05D006596 ORTHO05D008497 2.2e-12 77.0 168 32.7
A10p29980 Brassica napus HOM05D006596 ORTHO05D008497 3.8e-12 76.3 155 32.9
CAN.G1067.1 Capsicum annuum HOM05D000461 ORTHO05D001840 1.4e-11 74.3 86 48.8
BcaNung05486 Brassica carinata HOM05D006596 ORTHO05D008497 2.5e-11 73.6 86 45.3
TPR.G39953 Trifolium pratense HOM05D006596 ORTHO05D008497 1.2e-10 71.2 69 50.7
Haze_20109 Corylus avellana HOM05D006596 ORTHO05D008497 3.6e-10 69.7 216 29.2
Cfa020083 Carpinus fangiana HOM05D006596 ORTHO05D008497 1.0e-09 68.2 216 28.7
Cc09_g06050 Coffea canephora HOM05D000424 ORTHO05D000355 5.1e-09 65.9 108 35.2
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 1.1e-08 64.7 175 29.1
Dinv11883 Davidia involucrata HOM05D006596 ORTHO05D008497 1.5e-08 64.3 44 75.0
Manes.04G002700 Manihot esculenta HOM05D000424 ORTHO05D000355 1.5e-08 64.3 108 34.3
Peaxi162Scf00174g00073 Petunia axillaris HOM05D000424 ORTHO05D000355 1.5e-08 64.3 121 32.2
Nitab4.5_0002611g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.0e-08 63.9 158 29.7
Sopen04g035590 Solanum pennellii HOM05D000424 ORTHO05D000355 2.0e-08 63.9 107 33.6
PGSC0003DMG400009885 Solanum tuberosum HOM05D000424 ORTHO05D000355 2.0e-08 63.9 107 33.6
CDE07G0106 Ceratophyllum demersum HOM05D005973 ORTHO05D007285 2.6e-08 63.5 155 33.5
Lsat_1_v5_gn_2_6800 Lactuca sativa HOM05D000424 ORTHO05D000355 3.3e-08 63.2 103 35.9
Solyc01g068180.3 Solanum lycopersicum HOM05D005973 ORTHO05D007285 4.4e-08 62.8 178 25.3
Zm00001eb253100 Zea mays HOM05D006596 ORTHO05D008497 5.7e-08 62.4 132 31.1
CAN.G160.25 Capsicum annuum HOM05D000001 ORTHO05D000003 9.7e-08 61.6 158 28.5
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 9.7e-08 61.6 118 30.5
Ca_11668_v3 Cicer arietinum L. HOM05D006596 ORTHO05D008497 9.7e-08 61.6 47 63.8
ECA246G3879 Erigeron canadensis HOM05D005622 ORTHO05D002854 1.3e-07 61.2 158 28.5
HanXRQChr06g0185091 Helianthus annuus HOM05D000424 ORTHO05D000355 1.3e-07 61.2 100 36.0
PSO675G1088 Papaver somniferum HOM05D000424 ORTHO05D000355 1.3e-07 61.2 113 34.5
TPR.G39620 Trifolium pratense HOM05D006596 ORTHO05D008497 1.7e-07 60.8 85 41.2
BcaNung05934 Brassica carinata HOM05D000703 ORTHO05D000633 2.2e-07 60.5 168 26.8
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 2.2e-07 60.5 157 26.1
Nitab4.5_0007821g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.2e-07 60.5 158 29.1
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 2.8e-07 60.1 186 28.5
Peaxi162Scf00401g00032 Petunia axillaris HOM05D000001 ORTHO05D000003 2.8e-07 60.1 158 29.1
CSS0037385 Camellia sinensis var. sinensis HOM05D008810 ORTHO05D010971 3.7e-07 59.7 108 35.2
Solyc07g005850.3 Solanum lycopersicum HOM05D000001 ORTHO05D000003 3.7e-07 59.7 158 28.5
Sopen07g001950 Solanum pennellii HOM05D000001 ORTHO05D000003 3.7e-07 59.7 158 28.5
PGSC0003DMG400011199 Solanum tuberosum HOM05D000001 ORTHO05D000003 3.7e-07 59.7 158 29.1
Actinidia24374 Actinidia chinensis HOM05D000001 ORTHO05D000003 4.8e-07 59.3 161 28.0
AUR62039554 Chenopodium quinoa HOM05D000424 ORTHO05D000355 4.8e-07 59.3 189 25.4
COL.COLO4_27901 Corchorus olitorius HOM05D005622 ORTHO05D002854 4.8e-07 59.3 152 27.6
Lj7A250T23 Lonicera japonica HOM05D002986 ORTHO05D007611 4.8e-07 59.3 132 29.5
Lj7A254T21 Lonicera japonica HOM05D002986 ORTHO05D007611 4.8e-07 59.3 132 29.5
Nn1g07956 Nelumbo nucifera HOM05D000424 ORTHO05D000355 6.3e-07 58.9 103 34.0
Ah.09g228770 Amaranthus hybridus HOM05D000001 ORTHO05D000003 8.2e-07 58.5 159 28.9
CANSAT80G0227 Cannabis sativa HOM05D005622 ORTHO05D002854 8.2e-07 58.5 147 31.3
ECA238G3774 Erigeron canadensis HOM05D000424 ORTHO05D000355 8.2e-07 58.5 103 34.0
MD04G1034700 Malus domestica HOM05D007128 ORTHO05D009059 8.2e-07 58.5 132 32.6
QL02p012919 Quercus lobata HOM05D000424 ORTHO05D000355 8.2e-07 58.5 103 34.0
SalBow6G0752 Salvia bowleyana HOM05D006218 ORTHO05D007338 8.2e-07 58.5 176 25.0
Actinidia03863 Actinidia chinensis HOM05D006596 ORTHO05D008497 1.1e-06 58.2 119 28.6
CARHR043560 Cardamine hirsuta HOM05D002453 ORTHO05D008746 1.1e-06 58.2 84 39.3
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 1.1e-06 58.2 165 24.2
Potri.001G180000 Populus trichocarpa HOM05D006749 ORTHO05D008352 1.1e-06 58.2 111 32.4
SHI08443 Sapria himalayana HOM05D005622 ORTHO05D002854 1.1e-06 58.2 145 29.7
QL03p000909 Quercus lobata HOM05D005622 ORTHO05D002854 1.4e-06 57.8 145 28.3
QL03p001266 Quercus lobata HOM05D005622 ORTHO05D002854 1.4e-06 57.8 145 28.3
CARHR238580 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.8e-06 57.4 159 28.9
CiPaw.07G143800 Carya illinoinensis HOM05D000424 ORTHO05D000355 1.8e-06 57.4 103 34.0
Migut.C00898 Erythranthe guttata HOM05D000424 ORTHO05D000355 1.8e-06 57.4 108 31.5
Nn1g06206 Nelumbo nucifera HOM05D000001 ORTHO05D011132 1.8e-06 57.4 157 28.7
Nn8g39987 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.8e-06 57.4 163 26.4
Sabra16G0092400 Salix brachista HOM05D005622 ORTHO05D002854 1.8e-06 57.4 145 31.0
CAN.G311.72 Capsicum annuum HOM05D000424 ORTHO05D000355 2.4e-06 57.0 91 35.2
COL.COLO4_17790 Corchorus olitorius HOM05D007675 ORTHO05D009699 2.4e-06 57.0 108 36.1
Hund21894 Selenicereus undatus HOM05D000162 ORTHO05D000090 2.4e-06 57.0 131 29.0
Actinidia03971 Actinidia chinensis HOM05D006596 ORTHO05D008497 3.1e-06 56.6 39 66.7
Lalb_Chr23g0266001 Lupinus albus HOM05D000424 ORTHO05D000355 3.1e-06 56.6 103 32.0
SGA_v2.0_scaffold63G21630 Striga asiatica HOM05D005622 ORTHO05D002854 3.1e-06 56.6 127 29.9
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 3.1e-06 56.6 158 24.7
CARHR088490 Cardamine hirsuta HOM05D000001 ORTHO05D000003 4.1e-06 56.2 176 26.7
PSO541G2673 Papaver somniferum HOM05D000424 ORTHO05D000355 4.1e-06 56.2 107 33.6
Phvul.005G011000 Phaseolus vulgaris HOM05D000001 ORTHO05D011132 4.1e-06 56.2 165 27.9
TAR383G1103 Trochodendron aralioides HOM05D000001 ORTHO05D000003 4.1e-06 56.2 158 27.8
CSS0033743 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 5.3e-06 55.8 165 27.3
Haze_22701 Corylus avellana HOM05D000424 ORTHO05D000355 5.3e-06 55.8 102 33.3
Eucgr.B03161 Eucalyptus grandis HOM05D005622 ORTHO05D002854 5.3e-06 55.8 127 33.9
Lj4C17T15 Lonicera japonica HOM05D000424 ORTHO05D000355 5.3e-06 55.8 110 32.7
Medtr8g071300 Medicago truncatula HOM05D000424 ORTHO05D000355 5.3e-06 55.8 122 32.0
RcHm_v2.0_Chr2g0085291 Rosa chinensis HOM05D000001 ORTHO05D000003 5.3e-06 55.8 160 30.6
CAN.G338.60 Capsicum annuum HOM05D005622 ORTHO05D021722 7.0e-06 55.5 115 33.0
Lj7P462T29 Lonicera japonica HOM05D000001 ORTHO05D000003 7.0e-06 55.5 158 27.2
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 7.0e-06 55.5 126 30.2
PSO541G5032 Papaver somniferum HOM05D000424 ORTHO05D000355 7.0e-06 55.5 106 35.8
SGA_v2.0_scaffold292G47396 Striga asiatica HOM05D000424 ORTHO05D000355 7.0e-06 55.5 102 32.4
Aqoxy6G01988 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 9.1e-06 55.1 103 31.1
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 9.1e-06 55.1 154 29.2
MELO3C011426.2 Cucumis melo HOM05D005622 ORTHO05D002854 9.1e-06 55.1 154 26.6
Thhalv10024455m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 9.1e-06 55.1 159 29.6
Glyma.06G020900 Glycine max HOM05D000424 ORTHO05D000355 9.1e-06 55.1 102 32.4
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 9.1e-06 55.1 112 27.7
Psat7g006360 Pisum sativum HOM05D000001 ORTHO05D000003 9.1e-06 55.1 161 29.8
Prupe.1G285700 Prunus persica HOM05D005622 ORTHO05D002854 9.1e-06 55.1 145 29.0
SMO147G0255 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 9.1e-06 55.1 166 27.7


User provided reference genes

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