Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23948 Davidia involucrata HOM05D001790 ORTHO05D003691 2.1e-32 141.7 69 100.0
Actinidia16513 Actinidia chinensis HOM05D001790 ORTHO05D003691 4.1e-25 117.5 61 91.8
Actinidia06601 Actinidia chinensis HOM05D001790 ORTHO05D003691 1.2e-24 115.9 61 88.5
Actinidia20058 Actinidia chinensis HOM05D001790 ORTHO05D003691 1.7e-23 112.1 61 86.9
Lsat_1_v5_gn_5_1480 Lactuca sativa HOM05D001790 ORTHO05D003691 3.0e-23 111.3 61 80.3
Nn1g02214 Nelumbo nucifera HOM05D001790 ORTHO05D003691 3.0e-23 111.3 61 82.0
Nn4g26239 Nelumbo nucifera HOM05D001790 ORTHO05D003691 3.0e-23 111.3 61 83.6
Sc16g0008440 Simmondsia chinensis HOM05D001790 ORTHO05D003691 3.0e-23 111.3 65 75.4
vmacro12777 Vaccinium macrocarpon HOM05D001790 ORTHO05D003691 3.0e-23 111.3 61 85.2
Sc06g0003380 Simmondsia chinensis HOM05D001790 ORTHO05D003691 3.9e-23 110.9 65 76.9
CSS0035783 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 6.6e-23 110.2 61 85.2
Hma1.2p1_0617F.1_g190250 Hydrangea macrophylla HOM05D001790 ORTHO05D003691 6.6e-23 110.2 61 83.6
Ah.11g049780 Amaranthus hybridus HOM05D001790 ORTHO05D003691 8.6e-23 109.8 65 75.4
Rhsim01G0058000 Rhododendron simsii HOM05D001790 ORTHO05D003691 8.6e-23 109.8 61 85.2
Rhsim01G0059500 Rhododendron simsii HOM05D001790 ORTHO05D003691 8.6e-23 109.8 61 85.2
Lsat_1_v5_gn_2_87680 Lactuca sativa HOM05D001790 ORTHO05D003691 1.5e-22 109.0 61 78.7
AUR62011866 Chenopodium quinoa HOM05D001790 ORTHO05D003691 1.9e-22 108.6 65 72.3
AUR62024709 Chenopodium quinoa HOM05D001790 ORTHO05D003691 1.9e-22 108.6 65 72.3
Nitab4.5_0005388g0030 Nicotiana tabacum HOM05D001790 ORTHO05D003691 3.3e-22 107.8 61 83.6
Nitab4.5_0008677g0040 Nicotiana tabacum HOM05D001790 ORTHO05D003691 3.3e-22 107.8 61 83.6
TAR365G0532 Trochodendron aralioides HOM05D001790 ORTHO05D003691 4.3e-22 107.5 61 83.6
GSVIVG01000041001 Vitis vinifera HOM05D001790 ORTHO05D003691 5.6e-22 107.1 60 85.0
Peaxi162Scf00037g00237 Petunia axillaris HOM05D001790 ORTHO05D003691 7.3e-22 106.7 61 82.0
Hund07063 Selenicereus undatus HOM05D001790 ORTHO05D003691 9.6e-22 106.3 63 73.0
Hund21240 Selenicereus undatus HOM05D001790 ORTHO05D003691 9.6e-22 106.3 63 73.0
Dinv40278 Davidia involucrata HOM05D001790 ORTHO05D003691 1.6e-21 105.5 61 82.0
Ciclev10001143m.g Citrus clementina HOM05D001790 ORTHO05D003691 2.1e-21 105.1 64 75.0
Cc02_g33530 Coffea canephora HOM05D001790 ORTHO05D003691 2.1e-21 105.1 61 78.7
Cfa006580 Carpinus fangiana HOM05D001790 ORTHO05D003691 3.6e-21 104.4 64 76.6
Lj7A664T57 Lonicera japonica HOM05D001790 ORTHO05D003691 3.6e-21 104.4 61 80.3
TAR362G0657 Trochodendron aralioides HOM05D001790 ORTHO05D003691 3.6e-21 104.4 61 82.0
COL.COLO4_17835 Corchorus olitorius HOM05D001790 ORTHO05D003691 4.7e-21 104.0 60 80.0
Gohir.A03G212700 Gossypium hirsutum HOM05D001790 ORTHO05D003691 4.7e-21 104.0 60 80.0
VMungo0720G0527 Vigna mungo HOM05D001790 ORTHO05D003691 6.2e-21 103.6 58 82.8
Gohir.A01G179400 Gossypium hirsutum HOM05D001790 ORTHO05D003691 8.1e-21 103.2 60 81.7
Gohir.D01G170200 Gossypium hirsutum HOM05D001790 ORTHO05D003691 8.1e-21 103.2 60 81.7
Gorai.002G211800 Gossypium raimondii HOM05D001790 ORTHO05D003691 8.1e-21 103.2 60 81.7
Phvul.007G180500 Phaseolus vulgaris HOM05D001790 ORTHO05D003691 8.1e-21 103.2 58 81.0
Hma1.2p1_0928F.1_g237860 Hydrangea macrophylla HOM05D001790 ORTHO05D003691 1.1e-20 102.8 61 75.4
Prupe.6G327000 Prunus persica HOM05D001790 ORTHO05D003691 1.1e-20 102.8 64 75.0
TWI56G0634 Tripterygium wilfordii HOM05D001790 ORTHO05D003691 1.1e-20 102.8 60 80.0
CDE10G0434 Ceratophyllum demersum HOM05D001790 ORTHO05D003691 1.4e-20 102.4 61 75.4
Gohir.D02G234200 Gossypium hirsutum HOM05D001790 ORTHO05D003691 1.4e-20 102.4 60 78.3
Gorai.005G262200 Gossypium raimondii HOM05D001790 ORTHO05D003691 1.4e-20 102.4 60 78.3
PSO210G1133 Papaver somniferum HOM05D001790 ORTHO05D003691 1.4e-20 102.4 58 77.6
PSO210G6516 Papaver somniferum HOM05D001790 ORTHO05D003691 1.4e-20 102.4 58 77.6
Duzib132G0634 Durio zibethinus HOM05D001790 ORTHO05D003691 1.8e-20 102.1 60 78.3
Glyma.10G155000 Glycine max HOM05D001790 ORTHO05D003691 2.4e-20 101.7 58 79.3
Atru.chr8.1410 Acer truncatum HOM05D001790 ORTHO05D003691 3.1e-20 101.3 64 73.4
arahy.Tifrunner.gnm1.ann1.29QZWB Arachis hypogaea HOM05D001790 ORTHO05D003691 3.1e-20 101.3 58 81.0
CiPaw.07G016900 Carya illinoinensis HOM05D001790 ORTHO05D003691 3.1e-20 101.3 64 75.0
Lsat_1_v5_gn_4_42741 Lactuca sativa HOM05D001790 ORTHO05D003691 3.1e-20 101.3 57 77.2
HanXRQChr04g0099811 Helianthus annuus HOM05D001790 ORTHO05D003691 4.0e-20 100.9 61 73.8
HanXRQChr07g0195751 Helianthus annuus HOM05D001790 ORTHO05D003691 4.0e-20 100.9 61 73.8
Lj5g0001404 Lotus japonicus HOM05D001790 ORTHO05D003691 4.0e-20 100.9 58 79.3
Sopen01g042420 Solanum pennellii HOM05D001790 ORTHO05D003691 4.0e-20 100.9 61 75.4
PGSC0003DMG402028588 Solanum tuberosum HOM05D001790 ORTHO05D003691 4.0e-20 100.9 61 75.4
SGA_v2.0_scaffold354G49726 Striga asiatica HOM05D001790 ORTHO05D003691 4.0e-20 100.9 60 80.0
RcHm_v2.0_Chr3g0454601 Rosa chinensis HOM05D001790 ORTHO05D003691 5.2e-20 100.5 58 79.3
Solyc01g098880.3 Solanum lycopersicum HOM05D001790 ORTHO05D003691 5.2e-20 100.5 61 73.8
SGA_v2.0_scaffold5G02920 Striga asiatica HOM05D001790 ORTHO05D003691 5.2e-20 100.5 60 78.3
Thecc.02G035000 Theobroma cacao HOM05D001790 ORTHO05D003691 5.2e-20 100.5 60 78.3
EL10As5g23472 Beta vulgaris HOM05D001790 ORTHO05D003691 6.9e-20 100.1 63 68.3
Manes.02G210900 Manihot esculenta HOM05D001790 ORTHO05D003691 6.9e-20 100.1 59 81.4
MSTRG.27559 Avicennia marina HOM05D001790 ORTHO05D003691 8.9e-20 99.8 60 78.3
Eucgr.H04482 Eucalyptus grandis HOM05D001790 ORTHO05D003691 8.9e-20 99.8 59 78.0
MD12G1220200 Malus domestica HOM05D001790 ORTHO05D003691 8.9e-20 99.8 64 75.0
arahy.Tifrunner.gnm1.ann1.DW9AST Arachis hypogaea HOM05D001790 ORTHO05D003691 1.2e-19 99.4 58 79.3
Glyma.20G233300 Glycine max HOM05D001790 ORTHO05D003691 1.2e-19 99.4 58 77.6
MD04G1206400 Malus domestica HOM05D001790 ORTHO05D003691 1.2e-19 99.4 64 71.9
Sed0016587 Sechium edule HOM05D001790 ORTHO05D003691 1.2e-19 99.4 59 78.0
CiPaw.08G165400 Carya illinoinensis HOM05D001790 ORTHO05D003691 2.0e-19 98.6 64 75.0
Manes.10G109523 Manihot esculenta HOM05D001790 ORTHO05D003691 2.0e-19 98.6 59 79.7
PSO832G0951 Papaver somniferum HOM05D001790 ORTHO05D003691 2.0e-19 98.6 57 73.7
arahy.Tifrunner.gnm1.ann1.8W4KMR Arachis hypogaea HOM05D001790 ORTHO05D003691 2.6e-19 98.2 58 77.6
CAN.G134.54 Capsicum annuum HOM05D001790 ORTHO05D003691 2.6e-19 98.2 62 74.2
arahy.Tifrunner.gnm1.ann1.PXJ7J7 Arachis hypogaea HOM05D001790 ORTHO05D003691 3.4e-19 97.8 58 77.6
Duzib248G1449 Durio zibethinus HOM05D001790 ORTHO05D003691 3.4e-19 97.8 60 75.0
MBI04_g35660_MAGBIO Magnolia biondii HOM05D001790 ORTHO05D003691 3.4e-19 97.8 61 72.1
Oeu016077.1 Olea europaea HOM05D001790 ORTHO05D003691 3.4e-19 97.8 61 75.4
PGSC0003DMG400013480 Solanum tuberosum HOM05D001790 ORTHO05D003691 3.4e-19 97.8 64 68.8
Psat6g149680 Pisum sativum HOM05D001790 ORTHO05D003691 4.4e-19 97.4 58 74.1
SalBow3G2039 Salvia bowleyana HOM05D001790 ORTHO05D003691 4.4e-19 97.4 59 81.4
SalBow4G2898 Salvia bowleyana HOM05D001790 ORTHO05D003691 5.8e-19 97.1 59 79.7
FvH4_6g05710 Fragaria vesca HOM05D001790 ORTHO05D003691 7.6e-19 96.7 56 78.6
FAN02G4035 Fragaria x ananassa HOM05D001790 ORTHO05D003691 7.6e-19 96.7 56 78.6
FAN05G0374 Fragaria x ananassa HOM05D001790 ORTHO05D003691 7.6e-19 96.7 56 78.6
FAN05G5279 Fragaria x ananassa HOM05D001790 ORTHO05D003691 7.6e-19 96.7 56 78.6
FAN09G3771 Fragaria x ananassa HOM05D001790 ORTHO05D003691 7.6e-19 96.7 56 78.6
FAN14G1835 Fragaria x ananassa HOM05D001790 ORTHO05D003691 7.6e-19 96.7 56 78.6
QL03p006890 Quercus lobata HOM05D001790 ORTHO05D003691 7.6e-19 96.7 64 70.3
ATR0706G137 Amborella trichopoda HOM05D001790 ORTHO05D003691 9.9e-19 96.3 59 74.6
MELO3C026449.2 Cucumis melo HOM05D001790 ORTHO05D003691 9.9e-19 96.3 59 76.3
Migut.F00862 Erythranthe guttata HOM05D001790 ORTHO05D003691 9.9e-19 96.3 60 73.3
ECA234G0311 Erigeron canadensis HOM05D001790 ORTHO05D003691 1.3e-18 95.9 58 75.9
Lalb_Chr21g0310711 Lupinus albus HOM05D001790 ORTHO05D003691 1.3e-18 95.9 58 75.9
Ca_10108_v3 Cicer arietinum L. HOM05D001790 ORTHO05D003691 1.7e-18 95.5 58 72.4
Psat6g149440 Pisum sativum HOM05D001790 ORTHO05D003691 1.7e-18 95.5 59 69.5
Ca_01500_v3 Cicer arietinum L. HOM05D001790 ORTHO05D003691 2.2e-18 95.1 58 72.4
Lalb_Chr18g0045581 Lupinus albus HOM05D001790 ORTHO05D003691 2.2e-18 95.1 58 75.9
unitig_37.g12350 Utricularia gibba HOM05D001790 ORTHO05D003691 2.2e-18 95.1 60 71.7
CsaV3_5G013970 Cucumis sativus L. HOM05D001790 ORTHO05D003691 2.9e-18 94.7 59 74.6
DCAR_011444 Daucus carota HOM05D001790 ORTHO05D003691 2.9e-18 94.7 61 70.5
DCAR_029748 Daucus carota HOM05D001790 ORTHO05D003691 2.9e-18 94.7 61 70.5
QL06p003654 Quercus lobata HOM05D001790 ORTHO05D003691 2.9e-18 94.7 65 64.6
Sed0000871 Sechium edule HOM05D001790 ORTHO05D003691 2.9e-18 94.7 59 74.6
Medtr1g082850 Medicago truncatula HOM05D001790 ORTHO05D003691 3.8e-18 94.4 58 72.4
TPR.G14125 Trifolium pratense HOM05D001790 ORTHO05D003691 4.9e-18 94.0 64 68.8
ECA246G3796 Erigeron canadensis HOM05D001790 ORTHO05D003691 8.4e-18 93.2 61 67.2
THA.LOC104818684 Tarenaya hassleriana HOM05D001790 ORTHO05D003691 8.4e-18 93.2 64 65.6
PGR031G2902 Punica granatum HOM05D001790 ORTHO05D003691 1.1e-17 92.8 59 72.9
SEGI_34874 Sequoiadendron giganteum HOM05D001790 ORTHO05D003691 1.1e-17 92.8 61 68.9
THA.LOC104821709 Tarenaya hassleriana HOM05D001790 ORTHO05D003691 1.1e-17 92.8 68 67.6
QL02p001500 Quercus lobata HOM05D001790 ORTHO05D003691 1.4e-17 92.4 64 65.6
CAN.G1077.17 Capsicum annuum HOM05D001790 ORTHO05D003691 2.4e-17 91.7 64 71.9
ClCG03G016950 Citrullus lanatus HOM05D001790 ORTHO05D003691 2.4e-17 91.7 59 72.9
Lsat_1_v5_gn_3_25760 Lactuca sativa HOM05D001790 ORTHO05D003691 4.2e-17 90.9 59 67.8
Sabra05G0078200 Salix brachista HOM05D001790 ORTHO05D003691 5.4e-17 90.5 59 71.2
Cpa.g.sc26.176 Carica papaya HOM05D001790 ORTHO05D003691 1.2e-16 89.4 61 73.8
Potri.005G094400 Populus trichocarpa HOM05D001790 ORTHO05D003691 1.2e-16 89.4 59 71.2
SEGI_01941 Sequoiadendron giganteum HOM05D001790 ORTHO05D003691 2.7e-16 88.2 61 67.2
RcHm_v2.0_Chr2g0115881 Rosa chinensis HOM05D001790 ORTHO05D003691 3.5e-16 87.8 58 70.7
Aa31LG11G9230 Aethionema arabicum HOM05D001790 ORTHO05D003691 4.6e-16 87.4 67 65.7
AagrBONN_evm.TU.Sc2ySwM_344.3412 Anthoceros agrestis HOM05D001790 ORTHO05D003691 4.6e-16 87.4 56 62.5
CAN.G1091.2 Capsicum annuum HOM05D001790 ORTHO05D003691 4.6e-16 87.4 64 68.8
CDE10G0730 Ceratophyllum demersum HOM05D001790 ORTHO05D003691 4.6e-16 87.4 57 68.4
AL6G39530 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 7.8e-16 86.7 67 64.2
AT5G27470 Arabidopsis thaliana HOM05D001790 ORTHO05D003691 7.8e-16 86.7 67 67.2
A02p38650 Brassica napus HOM05D001790 ORTHO05D003691 3.9e-15 84.3 67 64.2
BraA02t08841Z Brassica rapa HOM05D001790 ORTHO05D003691 3.9e-15 84.3 67 64.2
CARHR289470 Cardamine hirsuta HOM05D001790 ORTHO05D003691 5.1e-15 84.0 63 65.1
ECA246G2160 Erigeron canadensis HOM05D001790 ORTHO05D003691 5.1e-15 84.0 60 63.3
BcaC03g17790 Brassica carinata HOM05D001790 ORTHO05D003691 6.6e-15 83.6 69 60.9
Thhalv10004203m.g Eutrema salsugineum HOM05D001790 ORTHO05D003691 6.6e-15 83.6 63 61.9
Sp2g20690 Schrenkiella parvula HOM05D001790 ORTHO05D003691 6.6e-15 83.6 67 61.2
SMO146G0126 Selaginella moellendorffii HOM05D001790 ORTHO05D003691 6.6e-15 83.6 62 59.7
C02p58140 Brassica napus HOM05D001790 ORTHO05D003691 8.7e-15 83.2 67 62.7
BolC2t11882H Brassica oleracea HOM05D001790 ORTHO05D003691 8.7e-15 83.2 67 62.7
FvH4_3g37770 Fragaria vesca HOM05D001790 ORTHO05D003691 1.5e-14 82.4 56 67.9
Carub.0006s2506 Capsella rubella HOM05D001790 ORTHO05D003691 1.9e-14 82.0 68 58.8
Mapoly0079s0015 Marchantia polymorpha HOM05D001790 ORTHO05D003691 3.3e-14 81.3 63 58.7
HPP92_015619 Vanilla planifolia HOM05D001790 ORTHO05D003691 4.3e-14 80.9 61 63.9
CSS0029145 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 5.6e-14 80.5 44 88.6
Aqoxy3G00799 Aquilegia oxysepala HOM05D001790 ORTHO05D003691 1.3e-13 79.3 64 56.2
AL6G39540 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.4e-12 75.9 67 61.2
ECA246G0857 Erigeron canadensis HOM05D001790 ORTHO05D003691 1.4e-12 75.9 58 58.6
Ah.02g112000 Amaranthus hybridus HOM05D001790 ORTHO05D003691 1.8e-12 75.5 45 71.1
CSS0032051 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 2.4e-12 75.1 63 63.5
Os03g0198400 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 6.9e-12 73.6 61 54.1
CSS0038561 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 1.5e-11 72.4 59 66.1
Os01g0559100 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 1.5e-11 72.4 62 51.6
Pp3c13_16820 Physcomitrium patens HOM05D001790 ORTHO05D003691 2.0e-11 72.0 61 49.2
Zm00001eb113140 Zea mays HOM05D001790 ORTHO05D003691 9.9e-11 69.7 61 52.5
BcaNung04373 Brassica carinata HOM05D001790 ORTHO05D003691 1.3e-10 69.3 63 55.6
MCO07G384 Micromonas commoda HOM05D001790 ORTHO05D003691 1.3e-10 69.3 61 59.0
C07p40910 Brassica napus HOM05D001790 ORTHO05D003691 1.7e-10 68.9 61 55.7
Zm00001eb400980 Zea mays HOM05D001790 ORTHO05D003691 1.7e-10 68.9 61 50.8
A06p37450 Brassica napus HOM05D001790 ORTHO05D003691 8.4e-10 66.6 61 54.1
BolC7t44620H Brassica oleracea HOM05D001790 ORTHO05D003691 8.4e-10 66.6 61 55.7
Carub.0001s3362 Capsella rubella HOM05D001790 ORTHO05D003691 1.1e-09 66.2 67 50.7
BcaNung02448 Brassica carinata HOM05D001790 ORTHO05D003691 1.4e-09 65.9 61 55.7
BraA06t26669Z Brassica rapa HOM05D001790 ORTHO05D003691 1.4e-09 65.9 61 54.1
AL1G50890 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.9e-09 65.5 67 49.3
Lj5g0023584 Lotus japonicus HOM05D001790 ORTHO05D003691 2.4e-09 65.1 58 55.2
BcaB04g19676 Brassica carinata HOM05D001790 ORTHO05D003691 3.2e-09 64.7 63 54.0
Aqoxy3G00711 Aquilegia oxysepala HOM05D001790 ORTHO05D003691 7.1e-09 63.5 67 49.3
AL8G17390 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 9.3e-09 63.2 60 51.7
Cre03.g189400 Chlamydomonas reinhardtii HOM05D001790 ORTHO05D003691 1.2e-08 62.8 62 53.2
PRCOL_00002676 Prasinoderma coloniale HOM05D001790 ORTHO05D003691 2.1e-08 62.0 51 52.9
BraA09t36170Z Brassica rapa HOM05D001790 ORTHO05D003691 3.5e-08 61.2 63 49.2
SMO118G0093 Selaginella moellendorffii HOM05D001790 ORTHO05D003691 3.5e-08 61.2 64 42.2
A09p05320 Brassica napus HOM05D001790 ORTHO05D003691 1.0e-07 59.7 63 47.6
Zm00001eb344690 Zea mays HOM05D001790 ORTHO05D003691 3.9e-07 57.8 60 45.0
Haze_26143 Corylus avellana HOM05D001790 ORTHO05D003691 6.7e-07 57.0 62 46.8
BcaC04g23675 Brassica carinata HOM05D001790 ORTHO05D003691 1.1e-06 56.2 63 49.2
C09p05790 Brassica napus HOM05D001790 ORTHO05D003691 2.5e-06 55.1 63 49.2
BolC9t53506H Brassica oleracea HOM05D001790 ORTHO05D003691 2.5e-06 55.1 63 49.2


User provided reference genes

Program Settings