Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.1e-56 223.4 136 100.0
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 4.0e-40 168.3 133 78.2
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 4.5e-39 164.9 133 77.4
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 4.5e-39 164.9 133 69.2
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 5.8e-39 164.5 133 76.7
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 7.6e-39 164.1 133 75.9
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.7e-38 162.9 133 75.9
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.9e-38 162.2 133 75.2
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 4.9e-38 161.4 129 58.1
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 6.4e-38 161.0 133 75.9
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.2e-37 158.3 133 75.2
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.2e-37 158.3 133 75.2
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 3.5e-36 155.2 133 71.4
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 3.5e-36 155.2 133 73.7
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 4.6e-36 154.8 129 77.5
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 3.0e-35 152.1 130 74.6
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 3.9e-35 151.8 133 72.2
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 6.7e-35 151.0 132 72.7
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 6.7e-35 151.0 132 66.7
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 8.7e-35 150.6 133 70.7
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 8.7e-35 150.6 131 71.0
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.9e-34 149.4 132 72.7
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.9e-34 149.4 133 71.4
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.9e-34 149.4 133 71.4
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.9e-34 149.4 133 71.4
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.3e-34 148.7 131 71.0
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 3.3e-34 148.7 128 73.4
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 5.6e-34 147.9 133 69.2
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 1.6e-33 146.4 128 71.9
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.8e-33 145.6 133 70.7
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 2.8e-33 145.6 124 56.5
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 2.8e-33 145.6 128 71.9
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 6.2e-33 144.4 131 68.7
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 6.2e-33 144.4 133 69.9
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.1e-32 143.7 128 72.7
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.1e-32 143.7 132 70.5
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 1.4e-32 143.3 132 68.9
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 2.4e-32 142.5 85 74.1
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 4.0e-32 141.7 134 70.1
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 5.3e-32 141.4 128 72.7
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 5.3e-32 141.4 133 67.7
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 5.3e-32 141.4 133 67.7
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 9.0e-32 140.6 128 71.1
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 9.0e-32 140.6 131 69.5
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 1.2e-31 140.2 130 56.9
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.5e-31 139.8 132 68.2
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 2.0e-31 139.4 131 69.5
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 2.0e-31 139.4 134 67.9
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 2.0e-31 139.4 126 63.5
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 2.6e-31 139.0 131 70.2
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.0e-30 137.1 131 68.7
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.3e-30 136.7 131 69.5
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 2.2e-30 136.0 128 68.8
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 2.9e-30 135.6 131 58.0
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 3.8e-30 135.2 131 67.9
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 3.8e-30 135.2 116 76.7
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 4.9e-30 134.8 131 67.2
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 4.9e-30 134.8 128 65.6
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 1.4e-29 133.3 128 64.8
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 3.2e-29 132.1 128 64.8
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 3.2e-29 132.1 133 66.2
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 4.2e-29 131.7 128 64.1
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 4.2e-29 131.7 134 69.4
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 5.5e-29 131.3 134 68.7
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 5.5e-29 131.3 89 66.3
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 7.1e-29 131.0 123 70.7
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 9.3e-29 130.6 134 68.7
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 9.3e-29 130.6 131 65.6
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 9.3e-29 130.6 133 63.2
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.1e-28 129.4 120 72.5
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 3.5e-28 128.6 130 63.1
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 3.5e-28 128.6 120 73.3
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.0e-27 127.1 133 60.9
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.8e-27 126.3 128 64.8
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 3.9e-27 125.2 133 61.7
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 8.7e-27 124.0 81 70.4
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.5e-26 123.2 133 60.9
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 2.5e-26 122.5 133 61.7
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 3.3e-26 122.1 133 54.1
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 5.7e-26 121.3 125 64.0
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 7.4e-26 120.9 132 61.4
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 9.7e-26 120.6 128 63.3
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 9.7e-26 120.6 132 61.4
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 9.7e-26 120.6 132 61.4
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.6e-25 119.8 123 67.5
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 2.2e-25 119.4 83 62.7
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 4.8e-25 118.2 132 59.1
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 4.8e-25 118.2 132 60.6
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 5.3e-24 114.8 123 57.7
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 5.3e-24 114.8 120 59.2
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.2e-23 113.6 135 42.2
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.2e-23 113.6 135 56.3
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 4.5e-23 111.7 135 55.6
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 5.9e-23 111.3 131 51.1
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 7.6e-23 110.9 133 60.9
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 7.6e-23 110.9 135 54.8
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.7e-22 109.8 80 57.5
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.7e-22 109.8 128 57.0
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 3.8e-22 108.6 126 57.9
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 5.0e-22 108.2 99 77.8
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 8.5e-22 107.5 111 68.5
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 8.5e-22 107.5 107 50.5
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 8.5e-22 107.5 132 53.0
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 8.5e-22 107.5 135 54.8
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 1.1e-21 107.1 128 56.2
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 4.2e-21 105.1 132 40.2
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 5.5e-21 104.8 136 55.9
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 5.5e-21 104.8 136 55.9
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 1.6e-20 103.2 141 51.1
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.9e-18 96.3 115 59.1
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 1.7e-17 93.2 134 46.3
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 1.1e-16 90.5 144 37.5
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 4.1e-16 88.6 115 50.4
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 5.3e-16 88.2 94 62.8
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 6.9e-16 87.8 131 42.0
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 6.9e-16 87.8 127 53.5
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 7.7e-15 84.3 117 39.3
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 7.7e-15 84.3 117 39.3
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 7.7e-15 84.3 117 39.3
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 5.0e-14 81.6 117 37.6
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 5.0e-14 81.6 117 37.6
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 6.5e-14 81.3 117 37.6
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 5.5e-13 78.2 121 50.4
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 7.2e-13 77.8 118 35.6
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 2.7e-12 75.9 99 38.4
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.7e-12 75.9 74 50.0
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 6.1e-12 74.7 67 49.3
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 9.7e-10 67.4 61 50.8
Hma1.2p1_1820F.1_g304180 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 7.0e-08 61.2 66 80.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 9.1e-08 60.8 123 38.2
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 4.5e-07 58.5 133 39.8


User provided reference genes

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