Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23611 Davidia involucrata HOM05D001625 ORTHO05D002663 5.6e-59 230.7 116 100.0
RcHm_v2.0_Chr6g0258221 Rosa chinensis HOM05D001625 ORTHO05D002663 2.3e-20 102.4 124 53.2
COL.COLO4_32672 Corchorus olitorius HOM05D001625 ORTHO05D002663 5.2e-20 101.3 122 50.0
FAN20G1968 Fragaria x ananassa HOM05D001625 ORTHO05D002663 5.7e-19 97.8 124 51.6
Thecc.02G098800 Theobroma cacao HOM05D001625 ORTHO05D002663 5.7e-19 97.8 122 48.4
FAN27G1544 Fragaria x ananassa HOM05D001625 ORTHO05D002663 9.7e-19 97.1 124 50.8
FAN15G0663 Fragaria x ananassa HOM05D001625 ORTHO05D002663 1.3e-18 96.7 124 51.6
Actinidia17861 Actinidia chinensis HOM05D001625 ORTHO05D002663 1.7e-18 96.3 113 53.1
CSS0000353 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D002663 1.7e-18 96.3 125 48.8
CiPaw.05G052200 Carya illinoinensis HOM05D001625 ORTHO05D002663 1.7e-18 96.3 62 77.4
Duzib248G0518 Durio zibethinus HOM05D001625 ORTHO05D002663 2.2e-18 95.9 77 68.8
CANSAT25G3564 Cannabis sativa HOM05D001625 ORTHO05D002663 2.8e-18 95.5 124 49.2
Cfa005472 Carpinus fangiana HOM05D001625 ORTHO05D002663 2.8e-18 95.5 62 79.0
Haze_01840 Corylus avellana HOM05D001625 ORTHO05D002663 2.8e-18 95.5 62 79.0
Haze_01845 Corylus avellana HOM05D001625 ORTHO05D002663 2.8e-18 95.5 62 79.0
FvH4_2g06340 Fragaria vesca HOM05D001625 ORTHO05D002663 2.8e-18 95.5 124 50.8
FAN24G1240 Fragaria x ananassa HOM05D001625 ORTHO05D002663 3.7e-18 95.1 62 82.3
Atru.chr5.2741 Acer truncatum HOM05D001625 ORTHO05D002663 6.3e-18 94.4 124 49.2
Duzib052G1188 Durio zibethinus HOM05D001625 ORTHO05D002663 6.3e-18 94.4 106 54.7
Prupe.8G122400 Prunus persica HOM05D001625 ORTHO05D002663 8.3e-18 94.0 124 49.2
ECA236G2769 Erigeron canadensis HOM05D001625 ORTHO05D002663 1.1e-17 93.6 61 78.7
Lj5A208G41 Lonicera japonica HOM05D001625 ORTHO05D002663 1.1e-17 93.6 128 49.2
MD05G1077400 Malus domestica HOM05D001625 ORTHO05D002663 1.4e-17 93.2 124 49.2
Gohir.D02G210800 Gossypium hirsutum HOM05D001625 ORTHO05D002663 7.0e-17 90.9 61 73.8
Gorai.005G238800 Gossypium raimondii HOM05D001625 ORTHO05D002663 7.0e-17 90.9 61 73.8
Rhsim05G0082900 Rhododendron simsii HOM05D001625 ORTHO05D002663 7.0e-17 90.9 121 48.8
MD10G1092600 Malus domestica HOM05D001625 ORTHO05D002663 9.1e-17 90.5 124 48.4
DCAR_029028 Daucus carota HOM05D001625 ORTHO05D002663 1.2e-16 90.1 67 68.7
HanXRQChr04g0128261 Helianthus annuus HOM05D001625 ORTHO05D002663 1.2e-16 90.1 61 73.8
Sabra09G0079200 Salix brachista HOM05D001625 ORTHO05D002663 1.2e-16 90.1 76 64.5
CAN.G1041.9 Capsicum annuum HOM05D001625 ORTHO05D002663 1.6e-16 89.7 118 46.6
CiPaw.06G143000 Carya illinoinensis HOM05D001625 ORTHO05D002663 1.6e-16 89.7 62 77.4
Cpa.g.sc62.27 Carica papaya HOM05D001625 ORTHO05D002663 2.7e-16 89.0 77 64.9
Gohir.A03G190100 Gossypium hirsutum HOM05D001625 ORTHO05D002663 3.5e-16 88.6 57 75.4
TWI79G0065 Tripterygium wilfordii HOM05D001625 ORTHO05D002663 3.5e-16 88.6 120 45.0
GSVIVG01031764001 Vitis vinifera HOM05D001625 ORTHO05D002663 3.5e-16 88.6 62 77.4
Potri.009G103500 Populus trichocarpa HOM05D001625 ORTHO05D002663 7.7e-16 87.4 76 63.2
Potri.004G142000 Populus trichocarpa HOM05D001625 ORTHO05D002663 1.0e-15 87.0 76 63.2
Aa31LG8G13330 Aethionema arabicum HOM05D001625 ORTHO05D002663 1.3e-15 86.7 79 64.6
Oeu010574.1 Olea europaea HOM05D001625 ORTHO05D002663 1.3e-15 86.7 71 63.4
QL11p036180 Quercus lobata HOM05D001625 ORTHO05D002663 1.7e-15 86.3 120 48.3
arahy.Tifrunner.gnm1.ann1.7J23VE Arachis hypogaea HOM05D001625 ORTHO05D002663 2.2e-15 85.9 124 44.4
arahy.Tifrunner.gnm1.ann1.BL68M3 Arachis hypogaea HOM05D001625 ORTHO05D002663 2.2e-15 85.9 124 44.4
arahy.Tifrunner.gnm1.ann1.QRWV2F Arachis hypogaea HOM05D001625 ORTHO05D002663 2.2e-15 85.9 124 44.4
HanXRQChr16g0508481 Helianthus annuus HOM05D001625 ORTHO05D002663 2.9e-15 85.5 79 58.2
arahy.Tifrunner.gnm1.ann1.HA6K5H Arachis hypogaea HOM05D001625 ORTHO05D002663 3.8e-15 85.1 124 44.4
CARHR106070 Cardamine hirsuta HOM05D001625 ORTHO05D002663 3.8e-15 85.1 61 72.1
Psat7g123160 Pisum sativum HOM05D001625 ORTHO05D002663 3.8e-15 85.1 74 66.2
PGSC0003DMG400025822 Solanum tuberosum HOM05D001625 ORTHO05D002663 3.8e-15 85.1 118 44.1
Oeu003702.2 Olea europaea HOM05D001625 ORTHO05D002663 5.0e-15 84.7 59 69.5
Sabra04G0093800 Salix brachista HOM05D001625 ORTHO05D002663 5.0e-15 84.7 76 61.8
SGA_v2.0_scaffold90G27675 Striga asiatica HOM05D001625 ORTHO05D002663 5.0e-15 84.7 73 61.6
A07p05100 Brassica napus HOM05D001625 ORTHO05D002663 6.5e-15 84.3 62 67.7
BraA07t28303Z Brassica rapa HOM05D001625 ORTHO05D002663 6.5e-15 84.3 62 67.7
Gohir.A01G006400 Gossypium hirsutum HOM05D001625 ORTHO05D002663 6.5e-15 84.3 73 64.4
Gorai.002G007500 Gossypium raimondii HOM05D001625 ORTHO05D002663 6.5e-15 84.3 73 64.4
Nitab4.5_0002097g0090 Nicotiana tabacum HOM05D001625 ORTHO05D002663 8.5e-15 84.0 118 44.9
Nitab4.5_0005249g0020 Nicotiana tabacum HOM05D001625 ORTHO05D002663 8.5e-15 84.0 118 44.9
Ca_18696_v3 Cicer arietinum L. HOM05D001625 ORTHO05D002663 1.1e-14 83.6 77 62.3
TPR.G30830 Trifolium pratense HOM05D001625 ORTHO05D002663 1.1e-14 83.6 74 64.9
CsaV3_3G018670 Cucumis sativus L. HOM05D001625 ORTHO05D002663 2.5e-14 82.4 65 64.6
AT2G15695 Arabidopsis thaliana HOM05D001625 ORTHO05D002663 3.2e-14 82.0 63 68.3
BcaB08g34608 Brassica carinata HOM05D001625 ORTHO05D002663 3.2e-14 82.0 61 67.2
Gohir.D01G006500 Gossypium hirsutum HOM05D001625 ORTHO05D002663 3.2e-14 82.0 117 46.2
THA.LOC104804372 Tarenaya hassleriana HOM05D001625 ORTHO05D002663 3.2e-14 82.0 67 65.7
Sopen01g050840 Solanum pennellii HOM05D001625 ORTHO05D002663 5.5e-14 81.3 118 43.2
MSTRG.20147 Avicennia marina HOM05D001625 ORTHO05D002663 7.2e-14 80.9 57 66.7
Lsat_1_v5_gn_7_87121 Lactuca sativa HOM05D001625 ORTHO05D002663 7.2e-14 80.9 61 72.1
BcaC01g03059 Brassica carinata HOM05D001625 ORTHO05D002663 9.4e-14 80.5 61 67.2
A03p45560 Brassica napus HOM05D001625 ORTHO05D002663 9.4e-14 80.5 61 67.2
C03p56560 Brassica napus HOM05D001625 ORTHO05D002663 9.4e-14 80.5 61 67.2
BolC3t17942H Brassica oleracea HOM05D001625 ORTHO05D002663 9.4e-14 80.5 61 67.2
BraA03t13689Z Brassica rapa HOM05D001625 ORTHO05D002663 9.4e-14 80.5 61 67.2
Ciclev10028545m.g Citrus clementina HOM05D001625 ORTHO05D002663 9.4e-14 80.5 76 63.2
Glyma.07G211400 Glycine max HOM05D001625 ORTHO05D002663 9.4e-14 80.5 77 61.0
Solyc01g108620.3 Solanum lycopersicum HOM05D001625 ORTHO05D002663 9.4e-14 80.5 118 43.2
MELO3C019501.2 Cucumis melo HOM05D001625 ORTHO05D002663 1.2e-13 80.1 65 63.1
Lj4g0016453 Lotus japonicus HOM05D001625 ORTHO05D002663 1.2e-13 80.1 117 44.4
Medtr4g086420 Medicago truncatula HOM05D001625 ORTHO05D002663 1.2e-13 80.1 74 63.5
TAR381G1668 Trochodendron aralioides HOM05D001625 ORTHO05D002663 1.2e-13 80.1 124 43.5
Glyma.02G133600 Glycine max HOM05D001625 ORTHO05D002663 1.6e-13 79.7 64 65.6
SGA_v2.0_scaffold32G13074 Striga asiatica HOM05D001625 ORTHO05D002663 1.6e-13 79.7 62 64.5
Dinv39326 Davidia involucrata HOM05D001625 ORTHO05D002663 4.7e-13 78.2 124 43.5
Manes.10G066100 Manihot esculenta HOM05D001625 ORTHO05D002663 6.1e-13 77.8 60 63.3
TAR625G0983 Trochodendron aralioides HOM05D001625 ORTHO05D002663 6.1e-13 77.8 124 42.7
AL3G47470 Arabidopsis lyrata HOM05D001625 ORTHO05D002663 8.0e-13 77.4 63 63.5
ClCG05G009910 Citrullus lanatus HOM05D001625 ORTHO05D002663 1.0e-12 77.0 65 61.5
Peaxi162Scf00016g01742 Petunia axillaris HOM05D001625 ORTHO05D002663 1.0e-12 77.0 118 42.4
SalBow6G3773 Salvia bowleyana HOM05D001625 ORTHO05D002663 1.0e-12 77.0 56 67.9
Sed0019855 Sechium edule HOM05D001625 ORTHO05D002663 1.4e-12 76.6 119 43.7
Carub.0003s2956 Capsella rubella HOM05D001625 ORTHO05D002663 1.8e-12 76.3 64 60.9
THA.LOC104819585 Tarenaya hassleriana HOM05D001625 ORTHO05D002663 1.8e-12 76.3 69 60.9
Phvul.003G295500 Phaseolus vulgaris HOM05D001625 ORTHO05D002663 3.0e-12 75.5 77 57.1
Nn5g30234 Nelumbo nucifera HOM05D001625 ORTHO05D002663 4.0e-12 75.1 120 38.3
Cc02_g18660 Coffea canephora HOM05D001625 ORTHO05D002663 5.2e-12 74.7 117 42.7
unitig_0.g856 Utricularia gibba HOM05D001625 ORTHO05D002663 5.2e-12 74.7 63 58.7
MBI06_g24645_MAGBIO Magnolia biondii HOM05D001625 ORTHO05D002663 6.8e-12 74.3 121 40.5
Sed0026214 Sechium edule HOM05D001625 ORTHO05D002663 6.8e-12 74.3 61 59.0
VMungo0251G2817 Vigna mungo HOM05D001625 ORTHO05D002663 6.8e-12 74.3 77 57.1
Nitab4.5_0000686g0030 Nicotiana tabacum HOM05D001625 ORTHO05D002663 8.8e-12 73.9 118 40.7
Cc10_g04300 Coffea canephora HOM05D001625 ORTHO05D002663 1.2e-11 73.6 124 40.3
Eucgr.G01459 Eucalyptus grandis HOM05D001625 ORTHO05D002663 1.2e-11 73.6 119 43.7
Lalb_Chr16g0384641 Lupinus albus HOM05D001625 ORTHO05D002663 1.2e-11 73.6 62 58.1
BcaB03g16312 Brassica carinata HOM05D001625 ORTHO05D002663 1.5e-11 73.2 62 62.9
BcaC06g36078 Brassica carinata HOM05D001625 ORTHO05D002663 1.5e-11 73.2 61 62.3
C07p08100 Brassica napus HOM05D001625 ORTHO05D002663 1.5e-11 73.2 61 62.3
BolC7t41228H Brassica oleracea HOM05D001625 ORTHO05D002663 1.5e-11 73.2 61 62.3
Eucgr.L02396 Eucalyptus grandis HOM05D001625 ORTHO05D002663 2.6e-11 72.4 119 43.7
Sp3g28970 Schrenkiella parvula HOM05D001625 ORTHO05D002663 3.4e-11 72.0 39 84.6
Peaxi162Scf00252g01216 Petunia axillaris HOM05D001625 ORTHO05D002663 7.5e-11 70.9 126 38.1
Nitab4.5_0001101g0100 Nicotiana tabacum HOM05D001625 ORTHO05D002663 3.7e-10 68.6 124 37.1
Oeu049971.1 Olea europaea HOM05D001625 ORTHO05D002663 3.7e-10 68.6 120 39.2
CAN.G371.33 Capsicum annuum HOM05D001625 ORTHO05D002663 6.3e-10 67.8 124 38.7
Nn1g05828 Nelumbo nucifera HOM05D001625 ORTHO05D002663 6.3e-10 67.8 56 60.7
Sabra14G0022300 Salix brachista HOM05D001625 ORTHO05D002663 6.3e-10 67.8 56 60.7
Dinv35972 Davidia involucrata HOM05D001625 ORTHO05D002663 8.3e-10 67.4 118 39.8
ATR0100G055 Amborella trichopoda HOM05D001625 ORTHO05D002663 1.8e-09 66.2 56 57.1
CDE10G1304 Ceratophyllum demersum HOM05D001164 ORTHO05D001031 3.1e-09 65.5 71 52.1
Dinv42143 Davidia involucrata HOM05D001625 ORTHO05D002663 3.1e-09 65.5 98 42.9
Thhalv10022704m.g Eutrema salsugineum HOM05D001625 ORTHO05D002663 3.1e-09 65.5 38 81.6
Potri.014G031800 Populus trichocarpa HOM05D001625 ORTHO05D002663 3.1e-09 65.5 120 37.5
Solyc04g079140.3 Solanum lycopersicum HOM05D001625 ORTHO05D002663 4.1e-09 65.1 124 35.5
Hma1.2p1_0982F.1_g243910 Hydrangea macrophylla HOM05D001625 ORTHO05D002663 7.0e-09 64.3 120 38.3
Potri.002G127600 Populus trichocarpa HOM05D001625 ORTHO05D002663 7.0e-09 64.3 120 36.7
PGSC0003DMG400008023 Solanum tuberosum HOM05D001625 ORTHO05D002663 9.1e-09 63.9 124 34.7
Migut.N01195 Erythranthe guttata HOM05D001625 ORTHO05D002663 1.6e-08 63.2 57 59.6
Manes.18G032400 Manihot esculenta HOM05D001625 ORTHO05D002663 1.6e-08 63.2 120 37.5
Sopen04g032750 Solanum pennellii HOM05D001625 ORTHO05D002663 1.6e-08 63.2 124 34.7
vmacro21535 Vaccinium macrocarpon HOM05D001625 ORTHO05D002663 1.6e-08 63.2 127 38.6
CSS0022663 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D002663 2.0e-08 62.8 114 38.6
PSO210G1621 Papaver somniferum HOM05D001625 ORTHO05D002663 2.0e-08 62.8 113 40.7
Os06g0213400 Oryza sativa ssp. japonica HOM05D001625 ORTHO05D002663 4.5e-08 61.6 55 52.7
Gohir.A05G201500 Gossypium hirsutum HOM05D001625 ORTHO05D002663 1.0e-07 60.5 58 55.2
Manes.05G172100 Manihot esculenta HOM05D001625 ORTHO05D002663 1.0e-07 60.5 120 35.0
CSS0040487 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D002663 1.3e-07 60.1 55 56.4
Cpa.g.sc49.2 Carica papaya HOM05D001625 ORTHO05D002663 1.3e-07 60.1 124 37.9
CiPaw.16G045700 Carya illinoinensis HOM05D001625 ORTHO05D002663 1.3e-07 60.1 61 54.1
MBI02_g17333_MAGBIO Magnolia biondii HOM05D001625 ORTHO05D002663 1.3e-07 60.1 56 57.1
COL.COLO4_26480 Corchorus olitorius HOM05D001625 ORTHO05D008114 2.3e-07 59.3 84 44.0
Gohir.D05G204600 Gossypium hirsutum HOM05D001625 ORTHO05D002663 2.3e-07 59.3 56 55.4
Gorai.009G210900 Gossypium raimondii HOM05D001625 ORTHO05D002663 2.3e-07 59.3 56 55.4
PGR042G3680 Punica granatum HOM05D001625 ORTHO05D002663 2.3e-07 59.3 62 58.1
Actinidia23266 Actinidia chinensis HOM05D001625 ORTHO05D002663 5.0e-07 58.2 119 37.0
Aqoxy5G01263 Aquilegia oxysepala HOM05D001625 ORTHO05D002663 6.6e-07 57.8 55 50.9
HPP92_010960 Vanilla planifolia HOM05D001625 ORTHO05D002663 6.6e-07 57.8 54 57.4
GSVIVG01009521001 Vitis vinifera HOM05D001625 ORTHO05D002663 8.6e-07 57.4 59 50.8
Oeu043551.1 Olea europaea HOM05D001625 ORTHO05D002663 1.1e-06 57.0 61 52.5
Zm00001eb373180 Zea mays HOM05D001625 ORTHO05D002663 1.9e-06 56.2 116 32.8
TWI36G0499 Tripterygium wilfordii HOM05D001625 ORTHO05D002663 5.5e-06 54.7 55 50.9


User provided reference genes

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