Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23227 Davidia involucrata HOM05D000245 ORTHO05D000020 9.9e-70 266.9 161 100.0
Dinv23226 Davidia involucrata HOM05D000245 ORTHO05D000020 1.2e-62 243.4 159 95.0
CSS0047738 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 2.3e-26 122.9 163 56.4
CSS0004785 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 2.5e-25 119.4 160 51.2
Hma1.2p1_0577F.1_g182250 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 2.2e-24 116.3 169 56.8
CSS0018401 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 3.1e-23 112.5 161 46.0
CSS0037465 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 3.1e-23 112.5 161 46.0
Dinv13720 Davidia involucrata HOM05D000245 ORTHO05D000020 2.2e-21 106.3 104 62.5
Actinidia36843 Actinidia chinensis HOM05D000245 ORTHO05D000020 5.0e-21 105.1 157 47.1
Manes.14G044700 Manihot esculenta HOM05D000245 ORTHO05D000020 1.4e-18 97.1 164 47.6
Oeu046601.1 Olea europaea HOM05D000245 ORTHO05D000020 5.1e-18 95.1 158 44.9
Oeu046604.1 Olea europaea HOM05D000245 ORTHO05D000020 3.3e-17 92.4 158 43.7
TAR371G1146 Trochodendron aralioides HOM05D000245 ORTHO05D000020 7.4e-17 91.3 158 50.6
Oeu012847.2 Olea europaea HOM05D000245 ORTHO05D000020 1.7e-16 90.1 159 45.3
Manes.06G127000 Manihot esculenta HOM05D000245 ORTHO05D000020 2.8e-16 89.4 163 50.9
TAR622G0351 Trochodendron aralioides HOM05D000245 ORTHO05D000020 1.4e-15 87.0 158 44.3
TAR629G1279 Trochodendron aralioides HOM05D000245 ORTHO05D000020 1.8e-15 86.7 158 55.7
MSTRG.22846 Avicennia marina HOM05D000245 ORTHO05D000020 9.1e-15 84.3 162 37.7
CiPaw.11G000600 Carya illinoinensis HOM05D000245 ORTHO05D000020 1.5e-14 83.6 140 51.4
Duzib205G1284 Durio zibethinus HOM05D000245 ORTHO05D000020 1.5e-14 83.6 161 52.8
Actinidia08910 Actinidia chinensis HOM05D000245 ORTHO05D000020 4.5e-14 82.0 82 57.3
Cc04_g05860 Coffea canephora HOM05D000245 ORTHO05D000020 4.5e-14 82.0 160 45.0
Rhsim08G0197600 Rhododendron simsii HOM05D000245 ORTHO05D000020 5.9e-14 81.6 160 48.1
vmacro21551 Vaccinium macrocarpon HOM05D000245 ORTHO05D000020 5.9e-14 81.6 159 40.9
QL10p000467 Quercus lobata HOM05D000245 ORTHO05D000020 2.9e-13 79.3 160 50.0
Sabra12G0079500 Salix brachista HOM05D000245 ORTHO05D000020 3.8e-13 79.0 150 46.0
Potri.003G162500 Populus trichocarpa HOM05D000245 ORTHO05D000020 8.5e-13 77.8 159 41.5
CSS0003530 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.1e-12 77.4 159 39.6
Lj5A86T71 Lonicera japonica HOM05D000245 ORTHO05D000020 1.1e-12 77.4 103 46.6
Nitab4.5_0002584g0030 Nicotiana tabacum HOM05D000245 ORTHO05D000020 2.5e-12 76.3 173 33.5
TWI23G0787 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 2.5e-12 76.3 156 44.2
CSS0000882 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 3.2e-12 75.9 163 38.0
Haze_07096 Corylus avellana HOM05D000245 ORTHO05D000020 5.5e-12 75.1 167 47.9
Duzib052G0199 Durio zibethinus HOM05D000245 ORTHO05D000020 5.5e-12 75.1 154 35.7
Nitab4.5_0001841g0070 Nicotiana tabacum HOM05D001469 ORTHO05D001648 5.5e-12 75.1 177 33.3
vmacro19185 Vaccinium macrocarpon HOM05D000245 ORTHO05D000020 7.2e-12 74.7 165 41.8
Potri.012G108500 Populus trichocarpa HOM05D000245 ORTHO05D000020 9.4e-12 74.3 156 46.2
Oeu026517.1 Olea europaea HOM05D000245 ORTHO05D000020 1.2e-11 73.9 98 44.9
CDE02G4413 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 1.6e-11 73.6 93 48.4
Duzib248G1108 Durio zibethinus HOM05D000245 ORTHO05D000020 1.6e-11 73.6 159 39.0
Gohir.A12G193600 Gossypium hirsutum HOM05D000245 ORTHO05D000020 1.6e-11 73.6 162 46.9
Sabra03G0118200 Salix brachista HOM05D000245 ORTHO05D000020 1.6e-11 73.6 159 42.1
Thecc.03G140700 Theobroma cacao HOM05D000245 ORTHO05D000020 1.6e-11 73.6 94 48.9
Gohir.D12G196100 Gossypium hirsutum HOM05D000245 ORTHO05D000020 2.1e-11 73.2 161 47.8
Gorai.008G210600 Gossypium raimondii HOM05D000245 ORTHO05D000020 2.1e-11 73.2 161 47.8
Nitab4.5_0023116g0010 Nicotiana tabacum HOM05D000245 ORTHO05D000020 3.6e-11 72.4 161 37.3
VMungo1309G2459 Vigna mungo HOM05D000245 ORTHO05D000020 4.7e-11 72.0 154 41.6
Peaxi162Scf00314g00628 Petunia axillaris HOM05D000245 ORTHO05D000020 6.1e-11 71.6 159 43.4
Aqoxy5G03117 Aquilegia oxysepala HOM05D000245 ORTHO05D000020 8.0e-11 71.2 99 47.5
MSTRG.8053 Avicennia marina HOM05D000245 ORTHO05D000020 8.0e-11 71.2 162 36.4
CDE09G0373 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 1.4e-10 70.5 93 47.3
Manes.09G188100 Manihot esculenta HOM05D000245 ORTHO05D000020 2.3e-10 69.7 143 39.2
Cpa.g.sc13.175 Carica papaya HOM05D000245 ORTHO05D000020 3.0e-10 69.3 74 62.2
Gohir.A03G152400 Gossypium hirsutum HOM05D000245 ORTHO05D000020 3.0e-10 69.3 161 35.4
Duzib068G1095 Durio zibethinus HOM05D000245 ORTHO05D000020 5.2e-10 68.6 82 53.7
Glyma.04G201900 Glycine max HOM05D000245 ORTHO05D000020 5.2e-10 68.6 149 47.0
Lalb_Chr23g0272861 Lupinus albus HOM05D000245 ORTHO05D000020 5.2e-10 68.6 157 36.9
Nitab4.5_0000976g0040 Nicotiana tabacum HOM05D000245 ORTHO05D000020 5.2e-10 68.6 173 38.2
MBI10_g39638_MAGBIO Magnolia biondii HOM05D000245 ORTHO05D000020 6.7e-10 68.2 162 50.0
Atru.chr6.1918 Acer truncatum HOM05D000245 ORTHO05D000020 8.8e-10 67.8 51 68.6
Peaxi162Scf00135g01433 Petunia axillaris HOM05D000245 ORTHO05D000020 8.8e-10 67.8 168 35.7
Sabra01G0046900 Salix brachista HOM05D000245 ORTHO05D000020 8.8e-10 67.8 147 41.5
Gorai.005G197100 Gossypium raimondii HOM05D000245 ORTHO05D000020 1.1e-09 67.4 161 34.8
Hma1.2p1_0471F.1_g159460 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 1.1e-09 67.4 165 39.4
Lsat_1_v5_gn_5_10080 Lactuca sativa HOM05D000245 ORTHO05D000020 1.1e-09 67.4 54 63.0
Peaxi162Scf00207g00144 Petunia axillaris HOM05D000245 ORTHO05D000020 1.1e-09 67.4 40 77.5
SalBow7G4172 Salvia bowleyana HOM05D000245 ORTHO05D000020 1.1e-09 67.4 34 94.1
Glyma.06G163700 Glycine max HOM05D000245 ORTHO05D000020 1.5e-09 67.0 150 41.3
Nn3g16273 Nelumbo nucifera HOM05D000245 ORTHO05D000020 1.5e-09 67.0 162 40.1
Thecc.02G192400 Theobroma cacao HOM05D000245 ORTHO05D000020 1.5e-09 67.0 149 34.9
Atru.chr6.1900 Acer truncatum HOM05D000245 ORTHO05D000020 2.0e-09 66.6 51 66.7
C03p06970 Brassica napus HOM05D000245 ORTHO05D000020 2.6e-09 66.2 106 39.6
GSVIVG01008649001 Vitis vinifera HOM05D000245 ORTHO05D000020 2.6e-09 66.2 39 82.1
A03p05940 Brassica napus HOM05D000245 ORTHO05D000020 3.3e-09 65.9 106 43.4
Duzib132G0436 Durio zibethinus HOM05D000245 ORTHO05D000020 3.3e-09 65.9 159 36.5
Lalb_Chr11g0069161 Lupinus albus HOM05D000245 ORTHO05D000020 3.3e-09 65.9 156 39.1
Actinidia18299 Actinidia chinensis HOM05D000245 ORTHO05D000020 4.4e-09 65.5 42 73.8
Nn4g22131 Nelumbo nucifera HOM05D000245 ORTHO05D000020 4.4e-09 65.5 105 41.9
Nitab4.5_0010249g0010 Nicotiana tabacum HOM05D001469 ORTHO05D001648 4.4e-09 65.5 169 36.7
Carub.0006s1150 Capsella rubella HOM05D000245 ORTHO05D000020 5.7e-09 65.1 95 44.2
FvH4_5g09511 Fragaria vesca HOM05D000245 ORTHO05D000020 5.7e-09 65.1 110 41.8
FAN18G2568 Fragaria x ananassa HOM05D000245 ORTHO05D000020 5.7e-09 65.1 110 41.8
Lj1g0009508 Lotus japonicus HOM05D000245 ORTHO05D000020 5.7e-09 65.1 160 33.8
Psat5g055720 Pisum sativum HOM05D000245 ORTHO05D000020 5.7e-09 65.1 168 44.6
QL03p049231 Quercus lobata HOM05D000245 ORTHO05D000020 5.7e-09 65.1 97 46.4
Actinidia25518 Actinidia chinensis HOM05D000245 ORTHO05D000020 7.4e-09 64.7 48 64.6
ECA232G4054 Erigeron canadensis HOM05D000245 ORTHO05D000020 7.4e-09 64.7 42 78.6
Glyma.04G201700 Glycine max HOM05D000245 ORTHO05D000020 7.4e-09 64.7 149 46.3
MD06G1130400 Malus domestica HOM05D000245 ORTHO05D000020 9.7e-09 64.3 117 41.0
vmacro16756 Vaccinium macrocarpon HOM05D000245 ORTHO05D000020 9.7e-09 64.3 40 77.5
Os04g0398000 Oryza sativa ssp. japonica HOM05D000245 ORTHO05D000020 1.3e-08 63.9 41 73.2
Prupe.5G141300 Prunus persica HOM05D000245 ORTHO05D000020 1.3e-08 63.9 182 44.0
Sp6g30660 Schrenkiella parvula HOM05D000245 ORTHO05D000020 1.3e-08 63.9 97 40.2
Potri.001G067600 Populus trichocarpa HOM05D000245 ORTHO05D000020 1.7e-08 63.5 151 39.7
FAN13G2623 Fragaria x ananassa HOM05D000245 ORTHO05D000020 2.2e-08 63.2 110 40.9
Thhalv10014575m.g Eutrema salsugineum HOM05D000245 ORTHO05D000020 2.8e-08 62.8 101 40.6
HanXRQChr16g0498951 Helianthus annuus HOM05D000245 ORTHO05D000020 2.8e-08 62.8 41 78.0
Zm00001eb084820 Zea mays HOM05D000245 ORTHO05D000020 2.8e-08 62.8 41 70.7
RcHm_v2.0_Chr7g0188691 Rosa chinensis HOM05D000245 ORTHO05D000020 3.7e-08 62.4 75 48.0
Gohir.A11G038700 Gossypium hirsutum HOM05D000245 ORTHO05D000020 4.8e-08 62.0 57 63.2
Nitab4.5_0005097g0040 Nicotiana tabacum HOM05D001469 ORTHO05D001648 4.8e-08 62.0 40 72.5
AL6G23950 Arabidopsis lyrata HOM05D000245 ORTHO05D000020 6.3e-08 61.6 96 43.8
RcHm_v2.0_Chr4g0428891 Rosa chinensis HOM05D000245 ORTHO05D000020 6.3e-08 61.6 109 40.4
A02p01850 Brassica napus HOM05D000245 ORTHO05D000020 8.2e-08 61.2 97 40.2
BraA02t05159Z Brassica rapa HOM05D000245 ORTHO05D000020 8.2e-08 61.2 97 40.2
Ciclev10005787m.g Citrus clementina HOM05D000245 ORTHO05D000020 8.2e-08 61.2 143 44.1
FAN04G3255 Fragaria x ananassa HOM05D000245 ORTHO05D000020 8.2e-08 61.2 111 37.8
Gohir.D11G041950 Gossypium hirsutum HOM05D000245 ORTHO05D000020 8.2e-08 61.2 57 63.2
Gorai.007G045100 Gossypium raimondii HOM05D000245 ORTHO05D000020 8.2e-08 61.2 57 63.2
Manes.08G101300 Manihot esculenta HOM05D000245 ORTHO05D000020 8.2e-08 61.2 160 41.9
Phvul.009G161000 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 8.2e-08 61.2 150 43.3
Solyc12g042210.2 Solanum lycopersicum HOM05D000245 ORTHO05D000020 8.2e-08 61.2 169 42.0
FAN08G0001 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.1e-07 60.8 75 48.0
MD14G1147200 Malus domestica HOM05D000245 ORTHO05D000020 1.1e-07 60.8 117 41.0
SalBow2G3113 Salvia bowleyana HOM05D000245 ORTHO05D000020 1.1e-07 60.8 98 41.8
TPR.G25955 Trifolium pratense HOM05D000245 ORTHO05D000020 1.1e-07 60.8 152 44.1
ECA246G4893 Erigeron canadensis HOM05D000245 ORTHO05D000020 1.4e-07 60.5 38 76.3
FAN17G2840 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.4e-07 60.5 118 39.8
HanXRQChr10g0316051 Helianthus annuus HOM05D000245 ORTHO05D000020 1.4e-07 60.5 54 57.4
Ah.02g114590 Amaranthus hybridus HOM05D000245 ORTHO05D000020 1.8e-07 60.1 65 52.3
C02p06060 Brassica napus HOM05D000245 ORTHO05D000020 1.8e-07 60.1 101 37.6
BolC2t06548H Brassica oleracea HOM05D000245 ORTHO05D000020 1.8e-07 60.1 101 37.6
unitig_0.g1090 Utricularia gibba HOM05D000245 ORTHO05D000020 1.8e-07 60.1 38 71.1
Sopen06g026100 Solanum pennellii HOM05D000245 ORTHO05D000020 2.4e-07 59.7 174 31.6
PGSC0003DMG400025582 Solanum tuberosum HOM05D000245 ORTHO05D000020 2.4e-07 59.7 58 53.4
THA.LOC104825459 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 2.4e-07 59.7 104 38.5
Lsat_1_v5_gn_3_32080 Lactuca sativa HOM05D000245 ORTHO05D000020 3.1e-07 59.3 110 40.0
Prupe.1G214900 Prunus persica HOM05D000245 ORTHO05D000020 3.1e-07 59.3 125 36.0
BcaNung01877 Brassica carinata HOM05D000210 ORTHO05D000247 4.1e-07 58.9 101 37.6
Solyc06g068830.2 Solanum lycopersicum HOM05D000245 ORTHO05D000020 4.1e-07 58.9 174 32.8
Hund02510 Selenicereus undatus HOM05D000245 ORTHO05D000020 5.3e-07 58.5 38 76.3
TWI39G0247 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 5.3e-07 58.5 142 43.0
VMungo0251G1565 Vigna mungo HOM05D000245 ORTHO05D000020 5.3e-07 58.5 44 68.2
BcaB01g05363 Brassica carinata HOM05D000210 ORTHO05D000247 7.0e-07 58.2 106 37.7
Aa31LG3G14320 Aethionema arabicum HOM05D000245 ORTHO05D000020 9.1e-07 57.8 95 40.0
arahy.Tifrunner.gnm1.ann1.B66PX0 Arachis hypogaea HOM05D000245 ORTHO05D000020 9.1e-07 57.8 45 68.9
Duzib187G1424 Durio zibethinus HOM05D000245 ORTHO05D000020 9.1e-07 57.8 109 39.4
FvH4_4g22650 Fragaria vesca HOM05D000245 ORTHO05D000020 9.1e-07 57.8 122 38.5
FAN12G3453 Fragaria x ananassa HOM05D000245 ORTHO05D000020 9.1e-07 57.8 122 38.5
Eucgr.B03559 Eucalyptus grandis HOM05D000245 ORTHO05D000020 1.2e-06 57.4 104 41.3
MBI07_g35977_MAGBIO Magnolia biondii HOM05D000245 ORTHO05D000020 1.2e-06 57.4 93 44.1
Oeu028937.1 Olea europaea HOM05D000245 ORTHO05D000020 1.2e-06 57.4 155 36.1
Solyc03g118190.4 Solanum lycopersicum HOM05D000245 ORTHO05D000020 1.2e-06 57.4 32 84.4
Sopen03g037110 Solanum pennellii HOM05D000245 ORTHO05D000020 1.2e-06 57.4 32 84.4
PGSC0003DMG400014240 Solanum tuberosum HOM05D000245 ORTHO05D000020 1.2e-06 57.4 32 84.4
arahy.Tifrunner.gnm1.ann1.88B2ED Arachis hypogaea HOM05D001469 ORTHO05D001648 1.6e-06 57.0 36 77.8
EL10Ac5g11282 Beta vulgaris HOM05D000245 ORTHO05D000020 1.6e-06 57.0 38 73.7
Gohir.D02G175500 Gossypium hirsutum HOM05D000245 ORTHO05D000020 1.6e-06 57.0 48 60.4
Medtr3g098580 Medicago truncatula HOM05D000245 ORTHO05D000020 1.6e-06 57.0 37 73.0
Phvul.002G281300 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 1.6e-06 57.0 44 65.9
CARHR275650 Cardamine hirsuta HOM05D000245 ORTHO05D000020 2.0e-06 56.6 52 51.9
CiPaw.06G109300 Carya illinoinensis HOM05D000245 ORTHO05D000020 2.0e-06 56.6 101 44.6
QL02p069457 Quercus lobata HOM05D000245 ORTHO05D000020 2.0e-06 56.6 125 36.0
AL8G38650 Arabidopsis lyrata HOM05D000245 ORTHO05D000020 2.6e-06 56.2 53 50.9
AT5G13330 Arabidopsis thaliana HOM05D000245 ORTHO05D000020 2.6e-06 56.2 95 48.4
arahy.Tifrunner.gnm1.ann1.IJ6373 Arachis hypogaea HOM05D001469 ORTHO05D001648 2.6e-06 56.2 142 37.3
CAN.G843.11 Capsicum annuum HOM05D000245 ORTHO05D000020 2.6e-06 56.2 173 39.9
CARHR200110 Cardamine hirsuta HOM05D000245 ORTHO05D000020 2.6e-06 56.2 95 48.4
Ciclev10032575m.g Citrus clementina HOM05D000245 ORTHO05D000020 2.6e-06 56.2 170 44.7
Sopen12g021250 Solanum pennellii HOM05D000245 ORTHO05D000020 2.6e-06 56.2 181 44.2
MSTRG.454 Avicennia marina HOM05D000245 ORTHO05D000020 3.5e-06 55.8 107 40.2
Carub.0008s2257 Capsella rubella HOM05D000245 ORTHO05D000020 3.5e-06 55.8 54 51.9
AT5G61890 Arabidopsis thaliana HOM05D000245 ORTHO05D000020 4.5e-06 55.5 53 50.9
arahy.Tifrunner.gnm1.ann1.2Q12N5 Arachis hypogaea HOM05D000245 ORTHO05D000020 4.5e-06 55.5 45 66.7
Haze_12501 Corylus avellana HOM05D000245 ORTHO05D000020 4.5e-06 55.5 112 38.4
FvH4_5g09520 Fragaria vesca HOM05D000245 ORTHO05D000020 4.5e-06 55.5 77 46.8
FAN13G0694 Fragaria x ananassa HOM05D000245 ORTHO05D000020 4.5e-06 55.5 72 50.0
MD13G1130700 Malus domestica HOM05D000245 ORTHO05D000020 4.5e-06 55.5 106 38.7
MD14G1147100 Malus domestica HOM05D000245 ORTHO05D000020 4.5e-06 55.5 56 58.9
SGA_v2.0_scaffold37G14645 Striga asiatica HOM05D000245 ORTHO05D000020 4.5e-06 55.5 89 46.1
Dinv31456 Davidia involucrata HOM05D000245 ORTHO05D000020 5.9e-06 55.1 143 35.7
Prupe.5G141200 Prunus persica HOM05D000245 ORTHO05D000020 5.9e-06 55.1 168 33.3
Hund10038 Selenicereus undatus HOM05D000245 ORTHO05D000020 5.9e-06 55.1 55 52.7
ECA246G0980 Erigeron canadensis HOM05D000245 ORTHO05D000020 7.7e-06 54.7 40 67.5


User provided reference genes

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