Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23175 Davidia involucrata HOM05D001065 ORTHO05D003103 6.1e-32 140.2 71 100.0
Dinv11194 Davidia involucrata HOM05D001065 ORTHO05D003103 9.8e-22 106.3 69 73.9
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.1e-20 102.8 65 75.4
GSVIVG01008584001 Vitis vinifera HOM05D001065 ORTHO05D003103 1.1e-20 102.8 69 68.1
TAR622G1388 Trochodendron aralioides HOM05D001065 ORTHO05D003103 1.2e-19 99.4 71 64.8
Oeu061132.1 Olea europaea HOM05D001065 ORTHO05D003103 3.9e-18 94.4 69 66.7
CSS0022286 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D003103 5.1e-18 94.0 72 65.3
Potri.015G100400 Populus trichocarpa HOM05D001065 ORTHO05D003103 1.1e-17 92.8 71 66.2
Aqoxy5G03263 Aquilegia oxysepala HOM05D001065 ORTHO05D003103 1.5e-17 92.4 71 63.4
Lj5C93G3 Lonicera japonica HOM05D001065 ORTHO05D003103 2.5e-17 91.7 63 71.4
QL10p002118 Quercus lobata HOM05D001065 ORTHO05D003103 5.6e-17 90.5 64 67.2
QL10p002155 Quercus lobata HOM05D001065 ORTHO05D003103 5.6e-17 90.5 64 67.2
CiPaw.11G004600 Carya illinoinensis HOM05D001065 ORTHO05D003103 7.3e-17 90.1 59 72.9
Rhsim08G0192700 Rhododendron simsii HOM05D001065 ORTHO05D003103 9.5e-17 89.7 71 60.6
CAN.G732.17 Capsicum annuum HOM05D001065 ORTHO05D003103 2.8e-16 88.2 69 55.1
Nn3g16379 Nelumbo nucifera HOM05D001065 ORTHO05D003103 2.8e-16 88.2 71 56.3
Nitab4.5_0002530g0070 Nicotiana tabacum HOM05D001065 ORTHO05D003103 3.6e-16 87.8 69 55.1
Sabra15G0121000 Salix brachista HOM05D001065 ORTHO05D003103 4.7e-16 87.4 71 62.0
Peaxi162Scf00516g00329 Petunia axillaris HOM05D001065 ORTHO05D003103 8.1e-16 86.7 69 56.5
PGSC0003DMG400032483 Solanum tuberosum HOM05D001065 ORTHO05D003103 1.4e-15 85.9 67 56.7
Manes.06G122300 Manihot esculenta HOM05D001065 ORTHO05D003103 3.1e-15 84.7 70 60.0
SalBow5G3382 Salvia bowleyana HOM05D001065 ORTHO05D003103 3.1e-15 84.7 69 59.4
Solyc03g097450.4 Solanum lycopersicum HOM05D001065 ORTHO05D003103 3.1e-15 84.7 67 55.2
Sopen03g028220 Solanum pennellii HOM05D001065 ORTHO05D003103 3.1e-15 84.7 67 55.2
Oeu030664.1 Olea europaea HOM05D001065 ORTHO05D003103 5.2e-15 84.0 69 59.4
PSO017G1827 Papaver somniferum HOM05D001065 ORTHO05D003103 5.2e-15 84.0 71 57.7
Cfa018763 Carpinus fangiana HOM05D001065 ORTHO05D003103 1.2e-14 82.8 64 62.5
Haze_07190 Corylus avellana HOM05D001065 ORTHO05D003103 1.2e-14 82.8 64 62.5
Ca_16061_v3 Cicer arietinum L. HOM05D001065 ORTHO05D003103 1.5e-14 82.4 64 60.9
Atru.chr6.1852 Acer truncatum HOM05D001065 ORTHO05D003103 3.4e-14 81.3 55 69.1
PSO478G1861 Papaver somniferum HOM05D001065 ORTHO05D003103 3.4e-14 81.3 71 56.3
Psat5g052400 Pisum sativum HOM05D001065 ORTHO05D003103 3.4e-14 81.3 64 59.4
RcHm_v2.0_Chr7g0189531 Rosa chinensis HOM05D001065 ORTHO05D003103 3.4e-14 81.3 64 54.7
Thecc.03G133900 Theobroma cacao HOM05D001065 ORTHO05D003103 3.4e-14 81.3 69 56.5
Phvul.009G132800 Phaseolus vulgaris HOM05D001065 ORTHO05D003103 4.4e-14 80.9 64 59.4
Duzib205G1530 Durio zibethinus HOM05D001065 ORTHO05D003103 5.8e-14 80.5 69 59.4
Glyma.04G243100 Glycine max HOM05D001065 ORTHO05D003103 7.5e-14 80.1 64 57.8
CDE06G0841 Ceratophyllum demersum HOM05D001065 ORTHO05D003103 9.9e-14 79.7 68 54.4
VMungo1309G1952 Vigna mungo HOM05D001065 ORTHO05D003103 9.9e-14 79.7 64 59.4
Lj1g0013977 Lotus japonicus HOM05D001065 ORTHO05D003103 1.3e-13 79.3 64 57.8
MBI07_g40341_MAGBIO Magnolia biondii HOM05D001065 ORTHO05D003103 1.3e-13 79.3 71 57.7
PGR083G2801 Punica granatum HOM05D001065 ORTHO05D003103 1.3e-13 79.3 59 62.7
Sc10g0010540 Simmondsia chinensis HOM05D001065 ORTHO05D003103 1.7e-13 79.0 65 58.5
CANSAT80G1097 Cannabis sativa HOM05D001065 ORTHO05D003103 2.2e-13 78.6 64 54.7
Cc07_g20270 Coffea canephora HOM05D001065 ORTHO05D003103 2.2e-13 78.6 71 57.7
Medtr3g099000 Medicago truncatula HOM05D001065 ORTHO05D003103 2.2e-13 78.6 64 56.2
Prupe.5G147600 Prunus persica HOM05D001065 ORTHO05D003103 2.9e-13 78.2 64 56.2
Gohir.D12G193000 Gossypium hirsutum HOM05D001065 ORTHO05D003103 3.7e-13 77.8 69 56.5
Gorai.008G207800 Gossypium raimondii HOM05D001065 ORTHO05D003103 3.7e-13 77.8 69 56.5
Lalb_Chr11g0069411 Lupinus albus HOM05D001065 ORTHO05D003103 3.7e-13 77.8 64 56.2
Hund14302 Selenicereus undatus HOM05D001065 ORTHO05D003103 3.7e-13 77.8 63 60.3
TPR.G21957 Trifolium pratense HOM05D001065 ORTHO05D003103 3.7e-13 77.8 64 54.7
TWI14G1104 Tripterygium wilfordii HOM05D001065 ORTHO05D003103 4.9e-13 77.4 57 64.9
arahy.Tifrunner.gnm1.ann1.N0U0UU Arachis hypogaea HOM05D001065 ORTHO05D003103 8.3e-13 76.6 64 57.8
arahy.Tifrunner.gnm1.ann1.Z6G03S Arachis hypogaea HOM05D001065 ORTHO05D003103 8.3e-13 76.6 64 57.8
Cpa.g.sc4.161 Carica papaya HOM05D001065 ORTHO05D003103 8.3e-13 76.6 59 64.4
Eucgr.K03476 Eucalyptus grandis HOM05D001065 ORTHO05D003103 8.3e-13 76.6 68 52.9
MSTRG.11263 Avicennia marina HOM05D001065 ORTHO05D003103 1.1e-12 76.3 69 53.6
FAN18G0786 Fragaria x ananassa HOM05D001065 ORTHO05D003103 1.1e-12 76.3 64 51.6
TWI23G0477 Tripterygium wilfordii HOM05D001065 ORTHO05D003103 1.4e-12 75.9 57 59.6
FvH4_5g08750 Fragaria vesca HOM05D001065 ORTHO05D003103 1.9e-12 75.5 64 50.0
FAN13G0558 Fragaria x ananassa HOM05D001065 ORTHO05D003103 2.4e-12 75.1 64 51.6
FAN08G3680 Fragaria x ananassa HOM05D001065 ORTHO05D003103 3.2e-12 74.7 64 50.0
ClCG06G018080 Citrullus lanatus HOM05D001065 ORTHO05D003103 7.1e-12 73.6 64 54.7
COL.COLO4_16638 Corchorus olitorius HOM05D001065 ORTHO05D003103 7.1e-12 73.6 66 54.5
Ciclev10031125m.g Citrus clementina HOM05D001065 ORTHO05D003103 9.2e-12 73.2 57 61.4
FAN04G3103 Fragaria x ananassa HOM05D001065 ORTHO05D003103 1.2e-11 72.8 64 48.4
MELO3C026190.2 Cucumis melo HOM05D001065 ORTHO05D003103 2.1e-11 72.0 64 53.1
CsaV3_1G000390 Cucumis sativus L. HOM05D001065 ORTHO05D003103 2.1e-11 72.0 64 53.1
DCAR_007508 Daucus carota HOM05D001065 ORTHO05D003103 3.5e-11 71.2 69 52.2
ECA232G3427 Erigeron canadensis HOM05D001065 ORTHO05D003103 3.5e-11 71.2 71 50.7
Migut.I00558 Erythranthe guttata HOM05D001065 ORTHO05D003103 3.5e-11 71.2 69 53.6
Lsat_1_v5_gn_4_82541 Lactuca sativa HOM05D001065 ORTHO05D003103 6.0e-11 70.5 71 47.9
Gohir.A12G190900 Gossypium hirsutum HOM05D001065 ORTHO05D003103 7.8e-11 70.1 69 55.1
Sed0024397 Sechium edule HOM05D001065 ORTHO05D003103 1.0e-10 69.7 59 55.9
MD14G1152600 Malus domestica HOM05D001065 ORTHO05D003103 2.3e-10 68.6 64 51.6
MD06G1137800 Malus domestica HOM05D001065 ORTHO05D003103 3.9e-10 67.8 64 50.0
unitig_61.g26206 Utricularia gibba HOM05D001065 ORTHO05D003103 1.1e-09 66.2 63 58.7
AUR62029578 Chenopodium quinoa HOM05D001065 ORTHO05D003103 1.5e-09 65.9 59 52.5
AUR62038849 Chenopodium quinoa HOM05D001065 ORTHO05D003103 2.5e-09 65.1 59 54.2
Nitab4.5_0000021g1050 Nicotiana tabacum HOM05D001065 ORTHO05D003103 7.3e-09 63.5 52 55.8
EL10Ac5g11385 Beta vulgaris HOM05D001065 ORTHO05D003103 9.5e-09 63.2 59 52.5
Aa31LG1G28960 Aethionema arabicum HOM05D001065 ORTHO05D003103 1.1e-07 59.7 59 52.5
Os04g0480300 Oryza sativa ssp. japonica HOM05D001065 ORTHO05D003103 1.4e-07 59.3 63 47.6
Thhalv10001411m.g Eutrema salsugineum HOM05D001065 ORTHO05D003103 1.8e-07 58.9 63 52.4
BcaC01g05026 Brassica carinata HOM05D000286 ORTHO05D003103 3.1e-07 58.2 66 50.0
BraA03t11817Z Brassica rapa HOM05D000286 ORTHO05D003103 3.1e-07 58.2 66 50.0
BcaB01g03164 Brassica carinata HOM05D000286 ORTHO05D003103 5.2e-07 57.4 66 50.0
A05p00310 Brassica napus HOM05D001065 ORTHO05D003103 5.2e-07 57.4 63 47.6
BraA05t19028Z Brassica rapa HOM05D001065 ORTHO05D003103 5.2e-07 57.4 63 47.6
SEGI_11956 Sequoiadendron giganteum HOM05D001065 ORTHO05D003103 5.2e-07 57.4 51 52.9
SGA_v2.0_scaffold188G40322 Striga asiatica HOM05D001065 ORTHO05D003103 5.2e-07 57.4 59 45.8
Zm00001eb079510 Zea mays HOM05D001065 ORTHO05D003103 8.9e-07 56.6 63 42.9
AL4G47200 Arabidopsis lyrata HOM05D001065 ORTHO05D003103 3.4e-06 54.7 63 47.6
Ah.11g045520 Amaranthus hybridus HOM05D002797 ORTHO05D003496 5.8e-06 53.9 59 49.2
BcaC02g12553 Brassica carinata HOM05D001065 ORTHO05D003103 5.8e-06 53.9 59 47.5
C04p00220 Brassica napus HOM05D001065 ORTHO05D003103 5.8e-06 53.9 59 47.5
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 7.6e-06 53.5 43 55.8
HPP92_011546 Vanilla planifolia HOM05D001065 ORTHO05D003103 7.6e-06 53.5 58 46.6


User provided reference genes

Program Settings