Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.6e-173 612.1 331 100.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 3.1e-150 535.4 370 84.1
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.8e-97 360.1 301 70.8
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.0e-85 320.1 301 64.8
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 7.7e-85 318.2 301 64.5
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.0e-81 307.8 288 66.0
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 5.1e-81 305.4 301 62.1
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.8e-79 299.7 297 62.6
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.4e-78 297.4 302 62.6
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.2e-77 294.3 296 60.8
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 1.2e-77 294.3 297 60.3
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.6e-77 293.9 300 60.7
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 7.7e-77 291.6 303 60.4
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.2e-75 286.2 291 62.2
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.2e-75 286.2 291 62.2
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 3.2e-75 286.2 291 62.2
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 5.2e-73 278.9 288 59.7
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.5e-72 277.3 285 61.8
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 6.3e-71 271.9 310 55.2
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 2.4e-70 270.0 297 56.9
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 3.1e-70 269.6 301 56.5
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.6e-69 267.3 279 60.6
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.0e-69 266.9 302 57.3
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.7e-69 265.0 285 58.9
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.0e-68 264.6 302 55.6
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.7e-68 263.8 280 59.3
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.2e-68 263.5 313 57.5
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.2e-68 263.5 305 57.0
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.2e-68 263.5 306 56.2
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 5.0e-68 262.3 430 45.6
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 6.5e-68 261.9 273 58.2
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.1e-66 256.9 303 55.4
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.7e-66 256.5 307 55.0
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 2.7e-66 256.5 287 56.4
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 4.7e-66 255.8 309 54.7
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.0e-65 254.6 283 57.6
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 4.0e-65 252.7 283 57.2
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.5e-64 250.8 288 55.2
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.0e-64 250.4 306 54.2
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 3.4e-64 249.6 293 55.6
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.4e-64 249.2 301 53.5
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 4.4e-64 249.2 283 56.5
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 9.8e-64 248.1 304 53.6
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 1.3e-63 247.7 289 54.3
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.3e-63 247.7 290 57.2
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 2.2e-63 246.9 314 52.5
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 4.8e-63 245.7 301 53.2
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 6.3e-63 245.4 300 54.0
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 6.3e-63 245.4 303 55.1
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-62 244.2 406 45.8
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.4e-62 244.2 290 54.1
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 4.1e-62 242.7 302 52.6
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 7.0e-62 241.9 265 60.8
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 7.0e-62 241.9 305 53.8
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 9.1e-62 241.5 304 53.3
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 9.1e-62 241.5 292 55.1
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 1.6e-61 240.7 306 52.6
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 5.9e-61 238.8 300 54.0
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 5.9e-61 238.8 306 53.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.9e-61 238.8 286 54.9
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 7.7e-61 238.4 300 53.3
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 1.0e-60 238.0 321 49.2
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.7e-60 237.3 403 45.2
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.7e-60 237.3 403 44.4
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.2e-60 236.9 306 53.3
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 2.9e-60 236.5 298 52.7
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 5.0e-60 235.7 261 55.6
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 8.5e-60 235.0 297 51.9
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.9e-59 233.8 287 53.3
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.5e-59 233.4 265 56.6
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.2e-59 233.0 274 53.6
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 4.2e-59 232.6 290 53.4
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 5.5e-59 232.3 262 56.9
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 7.2e-59 231.9 301 51.5
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 9.5e-59 231.5 262 54.6
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 2.1e-58 230.3 299 51.8
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.7e-58 229.9 262 55.3
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 1.0e-57 228.0 260 56.5
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.4e-57 227.6 269 55.0
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 3.0e-57 226.5 300 51.7
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.0e-57 226.1 287 51.9
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.8e-57 224.9 256 56.6
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 2.0e-56 223.8 261 54.4
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 2.6e-56 223.4 291 50.2
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 4.4e-56 222.6 244 56.1
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 4.4e-56 222.6 288 53.1
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.8e-55 219.9 291 51.9
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 2.8e-55 219.9 228 60.5
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 8.3e-55 218.4 300 49.7
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 8.3e-55 218.4 262 53.4
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.4e-54 217.6 296 48.3
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.8e-54 217.2 291 49.1
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 2.4e-54 216.9 299 48.2
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.4e-54 216.9 287 51.9
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 3.1e-54 216.5 301 47.5
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 5.4e-54 215.7 262 53.4
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.0e-54 215.3 287 51.9
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 2.7e-53 213.4 298 48.7
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 4.5e-53 212.6 283 47.3
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 7.7e-53 211.8 300 47.0
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.0e-52 211.5 299 47.8
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.0e-52 211.5 287 47.0
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 2.3e-52 210.3 300 46.7
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.5e-51 207.6 300 47.0
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-51 207.2 272 48.9
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.6e-50 204.1 270 48.9
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 4.7e-50 202.6 264 48.9
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.0e-49 201.4 262 53.4
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.8e-49 200.7 305 48.9
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 3.0e-49 199.9 300 45.7
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 3.0e-49 199.9 300 45.7
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 3.0e-49 199.9 300 45.7
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.2e-48 198.0 309 48.9
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 2.0e-48 197.2 299 46.5
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 2.6e-48 196.8 270 47.8
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 7.5e-48 195.3 187 65.8
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 1.8e-46 190.7 290 47.6
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 5.4e-46 189.1 170 67.1
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 5.4e-46 189.1 238 51.7
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 2.7e-45 186.8 173 68.8
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 2.7e-45 186.8 173 68.8
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.9e-45 185.7 260 50.8
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 5.9e-45 185.7 293 44.0
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 3.3e-43 179.9 299 45.2
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.6e-43 179.1 289 46.0
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.2e-42 177.9 308 44.8
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.6e-42 176.4 289 45.3
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 6.2e-42 175.6 285 46.7
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 6.2e-42 175.6 297 43.1
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.3e-41 173.7 297 43.1
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 5.2e-41 172.6 285 45.6
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.5e-40 171.0 296 42.2
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.5e-40 171.0 267 45.7
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 3.4e-40 169.9 255 45.1
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 5.8e-40 169.1 296 41.9
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 2.2e-39 167.2 292 44.9
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 4.9e-39 166.0 241 45.6
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 4.9e-39 166.0 254 44.5
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.4e-38 164.5 299 42.5
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 9.2e-38 161.8 293 43.7
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.0e-36 158.3 235 45.5
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 2.3e-36 157.1 190 54.2
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 2.3e-36 157.1 294 40.1
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.6e-34 149.8 205 48.3
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.3e-33 147.1 187 55.1
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 3.1e-33 146.7 262 40.1
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 5.2e-33 146.0 268 38.8
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 7.8e-29 132.1 285 40.0
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-27 128.3 146 50.0
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.5e-27 127.1 152 53.3
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 1.6e-26 124.4 168 48.8
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 2.8e-26 123.6 289 35.3
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 2.3e-25 120.6 284 36.3
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 3.4e-24 116.7 254 36.6
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 3.8e-23 113.2 303 35.0
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.8e-23 113.2 162 46.3
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.1e-22 111.7 91 78.0
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.4e-22 110.5 198 42.4
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 5.4e-22 109.4 254 39.4
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 9.2e-22 108.6 146 40.4
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.3e-19 99.8 162 49.4
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 7.3e-19 99.0 262 35.5
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.8e-18 97.1 245 36.7
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.4e-17 94.7 84 58.3
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.4e-17 94.0 92 64.1
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.2e-16 91.7 190 35.3
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.5e-16 91.3 142 40.8
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.6e-16 90.5 86 64.0
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 2.9e-15 87.0 156 42.3
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.9e-15 86.3 147 44.9
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.1e-14 85.1 277 32.5
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.2e-13 81.6 190 39.5
Dinv28535 Davidia involucrata HOM05D008269 ORTHO05D010153 6.6e-12 75.9 67 64.2
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.1e-11 75.1 126 48.4
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 3.6e-10 70.1 36 91.7
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 8.1e-10 68.9 62 69.4
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.1e-09 67.0 99 43.4
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 6.9e-09 65.9 60 66.7
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.9e-07 60.5 40 75.0
Rhsim03G0171400 Rhododendron simsii HOM05D008269 ORTHO05D010153 9.3e-06 55.5 65 52.3


User provided reference genes

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