Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 0.0e+00 1156.7 604 100.0
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.4e-248 861.7 605 75.5
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.7e-244 849.4 611 74.0
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.5e-243 846.3 522 84.5
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 2.7e-237 825.5 605 73.4
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.1e-235 820.1 623 71.3
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 9.0e-233 810.4 604 71.7
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 9.0e-233 810.4 605 72.4
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.3e-231 806.6 641 68.0
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.3e-231 806.6 611 73.2
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 4.9e-231 804.7 605 72.2
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.4e-230 803.1 618 70.6
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.4e-230 802.4 605 71.2
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 5.5e-230 801.2 613 68.8
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.5e-229 798.5 617 70.5
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.0e-228 797.0 614 68.4
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 1.8e-228 796.2 601 69.6
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 8.2e-226 787.3 492 81.9
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 8.2e-226 787.3 611 67.6
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 3.1e-225 785.4 610 69.2
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 9.0e-225 783.9 608 69.4
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 9.0e-225 783.9 605 69.8
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.0e-225 783.9 624 68.1
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.4e-224 781.9 611 67.1
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 4.5e-224 781.6 611 67.3
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 5.8e-224 781.2 611 67.3
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 7.6e-224 780.8 612 67.8
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.0e-223 780.4 618 68.0
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.7e-223 779.6 613 69.3
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.7e-223 779.6 611 67.3
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.7e-223 779.6 592 69.6
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 6.5e-223 777.7 605 69.4
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 8.4e-223 777.3 637 66.7
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.1e-222 776.9 612 67.8
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 2.5e-222 775.8 613 70.3
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 4.2e-222 775.0 608 69.6
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 9.3e-222 773.9 612 67.2
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 6.0e-221 771.2 610 68.5
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.3e-220 769.2 606 70.8
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 8.7e-220 767.3 608 68.6
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 8.2e-218 760.8 611 70.4
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.4e-217 760.0 616 67.2
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.4e-217 760.0 608 67.4
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.8e-217 759.6 624 65.4
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 2.0e-216 756.1 612 69.9
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.3e-215 753.4 602 66.3
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.7e-215 753.1 612 67.2
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 6.5e-215 751.1 583 70.3
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 1.9e-214 749.6 621 63.8
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.9e-214 749.6 612 66.7
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 3.2e-214 748.8 612 66.8
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 4.2e-214 748.4 615 64.9
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.7e-213 745.7 625 65.0
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 7.9e-213 744.2 613 63.5
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 1.0e-212 743.8 607 69.4
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 1.0e-212 743.8 622 63.7
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.8e-212 743.0 604 66.7
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.1e-211 740.3 581 69.0
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.1e-211 740.3 619 63.5
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 9.7e-211 737.3 608 64.8
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 9.7e-211 737.3 502 74.1
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 4.8e-210 734.9 576 66.8
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.8e-209 733.0 629 63.0
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 5.3e-209 731.5 586 66.2
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.2e-208 730.3 649 60.6
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 2.0e-208 729.6 682 63.2
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.3e-207 726.9 609 67.3
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 2.9e-207 725.7 612 63.9
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 5.0e-207 724.9 611 65.0
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 4.2e-206 721.8 586 64.5
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 2.7e-205 719.2 584 66.8
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.8e-204 716.5 620 66.6
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 3.0e-204 715.7 589 65.0
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 3.9e-204 715.3 589 65.4
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 5.1e-204 714.9 632 62.2
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 6.7e-204 714.5 597 64.5
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 2.6e-203 712.6 657 61.2
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.3e-203 712.2 512 73.4
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 3.3e-203 712.2 605 63.3
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 5.7e-203 711.4 630 61.7
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 6.3e-202 708.0 585 63.8
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.4e-201 706.1 615 62.8
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 3.1e-201 705.7 632 61.9
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 5.3e-201 704.9 599 63.6
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 5.3e-201 704.9 606 64.0
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 6.9e-201 704.5 627 61.9
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 6.9e-201 704.5 622 61.9
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-199 700.7 605 63.1
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 5.0e-199 698.4 580 62.9
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 8.5e-199 697.6 618 63.3
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.1e-198 697.2 610 61.3
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 5.5e-198 694.9 581 64.4
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 5.5e-198 694.9 613 62.5
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 4.7e-197 691.8 609 62.7
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.8e-196 689.9 616 61.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.0e-196 689.1 599 63.1
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 5.2e-196 688.3 612 65.5
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 6.7e-196 688.0 564 66.0
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.1e-195 687.2 617 61.4
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 6.3e-194 681.4 592 64.5
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 2.4e-193 679.5 611 61.2
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.5e-192 675.6 634 59.6
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.5e-192 675.2 628 60.7
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 7.7e-192 674.5 594 60.1
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 2.2e-191 672.9 606 60.7
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 1.5e-190 670.2 605 60.8
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 5.5e-190 668.3 606 59.9
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.7e-189 666.0 605 60.3
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 4.7e-189 665.2 606 59.9
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.0e-188 664.1 606 59.7
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 3.0e-188 662.5 661 56.3
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 6.7e-188 661.4 660 56.5
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 5.7e-187 658.3 605 59.5
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 1.3e-186 657.1 611 63.5
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.3e-186 657.1 605 59.7
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 4.8e-186 655.2 605 59.7
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.7e-184 649.4 608 58.7
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 5.9e-184 648.3 585 60.9
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 5.0e-183 645.2 604 59.1
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 6.5e-183 644.8 605 58.7
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 3.2e-182 642.5 613 58.9
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 2.7e-181 639.4 585 60.9
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.5e-176 622.1 495 67.7
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 7.7e-176 621.3 572 58.6
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 4.2e-174 615.5 604 56.3
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.8e-172 610.1 582 59.1
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.2e-171 607.4 469 68.2
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.7e-170 603.6 551 59.3
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.6e-168 597.0 554 60.3
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.3e-166 589.3 591 56.0
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 7.3e-166 588.2 560 58.8
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 6.8e-164 581.6 578 56.6
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 4.9e-162 575.5 517 64.0
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.2e-155 554.3 649 50.8
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.7e-154 550.4 600 54.0
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.3e-151 540.8 574 52.6
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 5.6e-150 535.4 578 51.9
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 2.1e-149 533.5 582 52.4
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 5.2e-148 528.9 423 65.2
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.4e-145 518.8 338 77.5
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 4.3e-142 509.2 387 70.3
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 4.0e-140 502.7 593 50.9
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.2e-138 496.9 447 60.2
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.7e-120 436.8 316 73.7
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 2.3e-119 433.7 396 57.8
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.1e-109 400.6 338 62.7
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 4.9e-106 389.4 631 38.8
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 6.5e-98 362.5 385 55.1
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 4.4e-70 270.0 163 86.5
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.2e-66 257.7 273 57.5
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.1e-64 251.1 227 64.3
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 3.4e-62 243.8 270 53.7
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 8.3e-53 212.6 138 81.9
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 4.9e-37 160.2 447 29.8
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 2.1e-32 144.8 476 25.8
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 6.8e-31 139.8 167 54.5
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 6.4e-29 133.3 551 23.0
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 5.1e-26 123.6 89 69.7
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.2e-19 102.4 108 50.9
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 3.5e-19 100.9 74 60.8
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 3.5e-19 100.9 83 57.8
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 2.3e-18 98.2 67 80.6
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 3.3e-17 94.4 101 52.5
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 7.3e-17 93.2 72 66.7
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.8e-16 91.3 197 47.2
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 2.8e-16 91.3 83 60.2
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 6.9e-15 86.7 62 71.0
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 4.9e-13 80.5 103 46.6
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.3e-08 65.9 130 38.5
Oeu010133.1 Olea europaea HOM05D010114 ORTHO05D000601 3.6e-08 64.3 69 52.2
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 1.8e-07 62.0 35 82.9
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 4.0e-07 60.8 246 28.9
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 6.9e-07 60.1 36 80.6
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 3.4e-06 57.8 36 86.1
Ca_06859_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 5.8e-06 57.0 246 24.8
Ca_07189_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 5.8e-06 57.0 246 24.8


User provided reference genes

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