Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.4e-197 693.0 405 100.0
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 1.5e-159 566.6 442 76.9
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.3e-150 537.0 405 74.8
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.8e-145 519.2 449 69.0
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.4e-144 516.9 446 70.0
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 5.2e-144 515.0 428 69.4
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 4.4e-143 511.9 410 70.2
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.7e-142 510.0 426 72.5
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.8e-142 508.8 405 72.6
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.4e-141 506.1 416 68.0
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.1e-141 504.6 418 71.8
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 7.1e-141 504.6 463 67.8
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.2e-141 504.2 416 71.4
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 2.1e-140 503.1 455 65.9
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.3e-139 500.4 443 65.7
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.6e-137 492.3 436 66.3
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 5.2e-136 488.4 450 67.3
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 5.2e-136 488.4 442 70.6
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.5e-135 486.9 450 62.0
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 3.4e-135 485.7 426 67.4
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 4.4e-135 485.3 422 66.8
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 7.6e-135 484.6 480 64.4
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 6.4e-134 481.5 434 70.5
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 3.2e-133 479.2 468 66.7
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 5.4e-133 478.4 445 65.6
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.2e-132 477.2 450 61.1
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 7.8e-132 474.6 480 60.6
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 6.6e-131 471.5 422 69.4
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 6.6e-131 471.5 440 63.9
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 8.7e-131 471.1 481 61.1
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.9e-130 469.9 453 63.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.9e-130 469.9 481 61.1
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 9.6e-130 467.6 480 60.0
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.3e-129 467.2 422 68.2
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.3e-129 467.2 430 61.9
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 6.2e-129 464.9 441 62.6
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 8.1e-129 464.5 455 58.0
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-128 463.8 481 60.5
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 7.6e-127 458.0 443 59.4
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 9.9e-127 457.6 435 65.7
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 3.8e-126 455.7 445 59.6
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.8e-126 455.7 437 61.1
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 8.4e-126 454.5 441 63.7
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.9e-125 453.4 424 60.1
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.9e-125 453.4 437 60.6
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.9e-125 453.4 448 66.5
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.2e-125 452.6 436 60.1
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 4.2e-125 452.2 425 71.5
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 2.1e-124 449.9 444 59.2
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.1e-124 449.9 427 63.9
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 6.0e-124 448.4 485 55.5
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 1.3e-123 447.2 494 55.1
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 2.3e-123 446.4 435 60.5
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 3.0e-123 446.0 463 60.7
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 3.0e-123 446.0 482 57.1
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 5.1e-123 445.3 444 59.0
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.5e-122 443.7 476 58.6
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.9e-122 443.4 474 57.0
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 4.3e-122 442.2 440 62.5
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 8.1e-121 438.0 431 62.2
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.6e-119 433.0 458 56.6
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.9e-118 429.5 440 57.7
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 6.4e-118 428.3 425 67.3
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.4e-117 427.2 405 61.5
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.9e-117 426.8 425 67.1
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 5.5e-117 425.2 506 53.0
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 7.1e-117 424.9 437 57.9
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.2e-116 424.1 397 67.3
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.3e-115 420.6 428 56.5
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.3e-115 419.9 403 65.0
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.3e-114 416.0 425 65.9
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 9.6e-114 414.5 505 52.5
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 2.8e-113 412.9 481 55.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.1e-112 411.0 416 58.2
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.1e-112 411.0 468 52.6
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.4e-112 410.6 514 51.2
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 4.0e-112 409.1 466 57.1
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 4.0e-112 409.1 423 60.8
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 6.9e-112 408.3 467 53.3
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 2.2e-110 403.3 427 62.1
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.9e-109 400.2 422 59.0
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 3.2e-109 399.4 424 59.2
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 3.5e-108 396.0 453 54.5
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 2.5e-106 389.8 424 63.2
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.5e-106 389.8 432 61.3
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 7.4e-106 388.3 491 56.6
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 2.2e-105 386.7 436 55.3
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 2.8e-105 386.3 389 63.5
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 6.3e-105 385.2 445 58.4
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 6.3e-105 385.2 410 63.2
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.4e-104 384.0 424 54.7
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 3.1e-104 382.9 454 59.3
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 5.3e-104 382.1 415 60.0
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 9.0e-104 381.3 452 58.0
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.5e-103 380.6 510 54.7
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 5.5e-101 372.1 423 61.5
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.8e-99 367.1 441 53.5
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 2.2e-97 360.1 429 58.0
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.7e-97 359.4 476 55.5
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.1e-96 357.8 428 51.6
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 9.1e-96 354.8 426 58.0
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.5e-95 354.0 492 50.0
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 7.7e-95 351.7 413 50.8
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.9e-94 349.7 373 56.8
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.7e-92 343.2 439 49.4
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 8.8e-91 338.2 197 86.3
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 5.9e-87 325.5 490 45.5
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.0e-86 324.7 396 52.5
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 3.3e-82 309.7 487 50.5
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 4.8e-81 305.8 171 89.5
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 6.3e-81 305.4 375 51.2
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 2.6e-79 300.1 420 52.4
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.0e-78 298.1 502 46.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.7e-78 297.4 316 63.6
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 5.0e-78 295.8 443 45.8
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.6e-76 289.7 192 78.1
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 2.2e-73 280.4 179 79.3
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.7e-71 273.5 497 39.6
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.7e-70 270.8 473 44.4
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.5e-69 267.7 345 50.7
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.1e-68 263.8 355 54.4
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.8e-62 243.0 266 58.3
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.4e-56 224.6 128 85.2
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.6e-52 211.1 375 40.5
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 4.7e-52 209.5 499 35.3
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.8e-51 207.6 172 65.7
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 5.4e-40 169.5 373 37.8
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 9.2e-40 168.7 421 35.6
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 6.6e-38 162.5 157 54.1
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 2.0e-34 151.0 157 50.3
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.3e-33 145.6 304 40.5
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 8.6e-30 135.6 147 46.9
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.3e-29 132.5 102 68.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 9.9e-26 122.1 65 93.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.3e-22 111.7 125 51.2
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.8e-20 104.0 97 59.8
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 8.1e-20 102.4 375 35.2
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 8.1e-20 102.4 375 35.2
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.4e-19 101.7 119 52.9
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.2e-15 88.6 198 34.3
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 2.1e-15 87.8 112 48.2
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 2.1e-15 87.8 112 48.2
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 8.7e-14 82.4 60 68.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.5e-13 81.6 49 77.6
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 8.1e-12 75.9 148 48.6
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 3.0e-06 57.4 125 31.2
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 3.9e-06 57.0 116 28.4
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 3.9e-06 57.0 116 28.4
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 3.9e-06 57.0 116 28.4
Rhsim01G0186600 Rhododendron simsii HOM05D000230 ORTHO05D000176 5.1e-06 56.6 123 27.6
Hund21655 Selenicereus undatus HOM05D000230 ORTHO05D000176 5.1e-06 56.6 121 28.1
CiPaw.13G170400 Carya illinoinensis HOM05D000230 ORTHO05D000176 6.7e-06 56.2 138 26.8


User provided reference genes

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